Wall clock time and date at job start Thu Mar 4 2021 18:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86303 * 109.44015 * 2 1 4 4 C 1.88799 * 109.44147 * 119.92423 * 2 1 3 5 5 C 1.49874 * 108.19207 * 50.78233 * 4 2 1 6 6 C 1.54333 * 114.58760 * 84.45359 * 5 4 2 7 7 N 1.47121 * 117.93537 * 314.26075 * 6 5 4 8 8 C 1.34772 * 118.22834 * 134.72079 * 7 6 5 9 9 O 1.21284 * 119.99979 * 179.97438 * 8 7 6 10 10 C 1.50705 * 120.00258 * 359.97438 * 8 7 6 11 11 N 1.46496 * 109.47008 * 179.97438 * 10 8 7 12 12 C 1.36841 * 125.05832 * 265.01823 * 11 10 8 13 13 C 1.34244 * 109.93657 * 179.97438 * 12 11 10 14 14 C 1.50698 * 126.49861 * 180.02562 * 13 12 11 15 15 O 1.42898 * 109.47371 * 104.97346 * 14 13 12 16 16 Si 1.86301 * 109.47128 * 344.96969 * 14 13 12 17 17 H 1.48497 * 109.46931 * 60.00529 * 16 14 13 18 18 H 1.48499 * 109.47161 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.46951 * 300.00243 * 16 14 13 20 20 C 1.46490 * 106.99840 * 359.97438 * 13 12 11 21 21 C 1.39591 * 134.03768 * 180.02562 * 20 13 12 22 22 C 1.36660 * 119.76664 * 179.97438 * 21 20 13 23 23 C 1.38794 * 120.52792 * 0.02562 * 22 21 20 24 24 C 1.37791 * 120.66333 * 359.97438 * 23 22 21 25 25 C 1.37687 * 125.06864 * 84.71621 * 11 10 8 26 26 C 1.42774 * 123.53698 * 314.70878 * 7 6 5 27 27 C 1.54950 * 107.21088 * 96.96223 * 26 7 6 28 28 H 1.08996 * 109.47250 * 300.07869 * 1 2 3 29 29 H 1.09005 * 109.46871 * 60.07779 * 1 2 3 30 30 H 1.08999 * 109.47512 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46999 * 179.97438 * 3 2 1 32 32 H 1.08997 * 109.47108 * 299.92458 * 3 2 1 33 33 H 1.08996 * 109.47097 * 59.92409 * 3 2 1 34 34 H 1.09002 * 109.72754 * 170.47128 * 4 2 1 35 35 H 1.08998 * 109.72375 * 291.09767 * 4 2 1 36 36 H 1.09008 * 108.45437 * 205.85374 * 5 4 2 37 37 H 1.09000 * 108.45658 * 323.19464 * 5 4 2 38 38 H 1.09001 * 107.76556 * 192.10691 * 6 5 4 39 39 H 1.08998 * 107.69398 * 76.36579 * 6 5 4 40 40 H 1.09006 * 109.46383 * 299.99380 * 10 8 7 41 41 H 1.08998 * 109.47285 * 59.99692 * 10 8 7 42 42 H 1.07995 * 125.03376 * 359.96907 * 12 11 10 43 43 H 1.09003 * 109.46664 * 224.97359 * 14 13 12 44 44 H 0.96707 * 113.99712 * 299.99977 * 15 14 13 45 45 H 1.08002 * 120.11359 * 359.96379 * 21 20 13 46 46 H 1.08000 * 119.74074 * 180.02562 * 22 21 20 47 47 H 1.07997 * 119.66533 * 180.02562 * 23 22 21 48 48 H 1.07997 * 120.10598 * 179.97438 * 24 23 22 49 49 H 1.08997 * 109.90809 * 337.53291 * 26 7 6 50 50 H 1.09002 * 109.90180 * 216.38909 * 26 7 6 51 51 H 1.09001 * 109.04513 * 163.35044 * 27 26 7 52 52 H 1.09000 * 109.04663 * 44.46738 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4830 1.7568 0.0000 4 6 2.4913 -0.8881 1.5430 5 6 1.7982 -2.2138 1.6348 6 6 2.4535 -3.3398 0.8074 7 7 2.8527 -3.0359 -0.5756 8 6 4.0678 -3.4434 -0.9925 9 8 4.4294 -3.2104 -2.1265 10 6 4.9772 -4.1886 -0.0498 11 7 6.2283 -4.5185 -0.7368 12 6 6.4912 -5.7061 -1.3637 13 6 7.7254 -5.6818 -1.8913 14 6 8.3930 -6.7917 -2.6617 15 8 8.4045 -6.4659 -4.0530 16 14 7.4532 -8.3794 -2.4034 17 1 6.0581 -8.2126 -2.8842 18 1 8.1113 -9.4732 -3.1620 19 1 7.4413 -8.7179 -0.9575 20 6 8.2997 -4.3713 -1.5770 21 6 9.5245 -3.7585 -1.8474 22 6 9.7601 -2.4878 -1.4031 23 6 8.7913 -1.8013 -0.6844 24 6 7.5756 -2.3872 -0.4063 25 6 7.3125 -3.6778 -0.8530 26 6 2.0222 -2.3328 -1.4999 27 6 2.4633 -0.8476 -1.4748 28 1 -0.3633 0.5150 0.8892 29 1 -0.3633 0.5127 -0.8907 30 1 -0.3634 -1.0276 0.0005 31 1 3.5730 1.7574 0.0005 32 1 2.1205 2.2700 -0.8906 33 1 2.1183 2.2708 0.8893 34 1 3.5680 -1.0404 1.4671 35 1 2.2655 -0.2929 2.4277 36 1 1.7766 -2.5202 2.6807 37 1 0.7702 -2.0900 1.2943 38 1 1.7571 -4.1777 0.7758 39 1 3.3421 -3.6714 1.3446 40 1 5.1922 -3.5639 0.8173 41 1 4.4889 -5.1070 0.2761 42 1 5.8072 -6.5395 -1.4250 43 1 9.4170 -6.9141 -2.3087 44 1 7.5248 -6.3421 -4.4352 45 1 10.2832 -4.2869 -2.4056 46 1 10.7076 -2.0140 -1.6129 47 1 8.9922 -0.7975 -0.3403 48 1 6.8284 -1.8449 0.1540 49 1 0.9782 -2.4150 -1.1977 50 1 2.1528 -2.7419 -2.5017 51 1 2.0706 -0.3449 -2.3586 52 1 3.5521 -0.7996 -1.4942 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915400_9818708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:51:57 Heat of formation + Delta-G solvation = -27.562318 kcal Electronic energy + Delta-G solvation = -31358.343005 eV Core-core repulsion = 27447.332850 eV Total energy + Delta-G solvation = -3911.010155 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 360.178 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.59539 -41.15392 -38.15045 -37.80760 -37.40154 -34.35998 -33.92446 -32.26430 -31.08939 -30.25238 -29.22031 -28.62634 -28.38742 -27.10972 -25.92083 -24.28680 -23.59503 -22.60178 -22.27283 -20.78263 -19.91504 -18.69937 -18.45876 -17.80793 -17.42635 -16.93508 -16.60541 -16.41626 -16.13279 -15.70468 -15.60723 -15.26987 -15.04225 -14.83348 -14.72953 -14.54416 -14.51456 -14.33145 -14.21365 -13.95558 -13.69944 -13.50003 -13.44654 -13.28203 -13.12551 -13.08439 -12.94534 -12.71105 -12.60511 -12.55400 -12.34296 -12.16401 -12.14863 -11.91349 -11.74799 -11.68482 -11.05220 -10.78109 -10.61366 -10.54409 -10.28054 -10.19032 -9.70153 -9.17067 -8.63932 0.12899 0.63718 1.21938 1.36816 1.41632 1.48910 1.58092 1.68267 1.88772 1.93153 1.94895 2.00487 2.09714 2.73267 2.93864 3.31457 3.59740 3.61270 3.70968 3.79561 3.83711 4.00424 4.05651 4.12043 4.20928 4.23546 4.29504 4.34715 4.41838 4.50724 4.54685 4.59519 4.69985 4.71298 4.73651 4.75375 4.78133 4.84859 4.87528 4.89394 4.93051 5.01809 5.02591 5.13547 5.31728 5.36836 5.50184 5.50273 5.53615 5.63212 5.66064 5.73396 5.74433 5.74990 6.12069 6.20908 6.30719 6.74612 7.04221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.456 4.456 2 Si 1.073 2.927 3 C -0.472 4.472 4 C -0.400 4.400 5 C -0.121 4.121 6 C 0.087 3.913 7 N -0.589 5.589 8 C 0.484 3.516 9 O -0.567 6.567 10 C 0.084 3.916 11 N -0.467 5.467 12 C 0.061 3.939 13 C -0.216 4.216 14 C -0.053 4.053 15 O -0.560 6.560 16 Si 0.993 3.007 17 H -0.248 1.248 18 H -0.273 1.273 19 H -0.248 1.248 20 C -0.114 4.114 21 C -0.085 4.085 22 C -0.154 4.154 23 C -0.106 4.106 24 C -0.137 4.137 25 C 0.091 3.909 26 C 0.129 3.871 27 C -0.464 4.464 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.078 0.922 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.142 0.858 41 H 0.159 0.841 42 H 0.191 0.809 43 H 0.110 0.890 44 H 0.383 0.617 45 H 0.123 0.877 46 H 0.138 0.862 47 H 0.145 0.855 48 H 0.129 0.871 49 H 0.108 0.892 50 H 0.053 0.947 51 H 0.075 0.925 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.581 -1.060 8.039 10.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.264 2.736 3 C -0.578 4.578 4 C -0.487 4.487 5 C -0.159 4.159 6 C -0.034 4.034 7 N -0.321 5.321 8 C 0.271 3.729 9 O -0.445 6.445 10 C -0.040 4.040 11 N -0.150 5.150 12 C -0.064 4.064 13 C -0.223 4.223 14 C -0.163 4.163 15 O -0.367 6.367 16 Si 0.814 3.186 17 H -0.171 1.171 18 H -0.198 1.198 19 H -0.172 1.172 20 C -0.119 4.119 21 C -0.103 4.103 22 C -0.173 4.173 23 C -0.125 4.125 24 C -0.157 4.157 25 C -0.014 4.014 26 C 0.005 3.995 27 C -0.547 4.547 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.097 0.903 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.106 0.894 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.159 0.841 41 H 0.176 0.824 42 H 0.208 0.792 43 H 0.128 0.872 44 H 0.232 0.768 45 H 0.141 0.859 46 H 0.156 0.844 47 H 0.163 0.837 48 H 0.147 0.853 49 H 0.126 0.874 50 H 0.071 0.929 51 H 0.093 0.907 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.532 -1.708 7.793 10.310 hybrid contribution -0.054 1.014 -0.863 1.332 sum -6.586 -0.695 6.929 9.585 Atomic orbital electron populations 1.26274 1.20638 1.04908 1.04495 0.77964 0.66323 0.64279 0.65041 1.26414 1.05836 1.21272 1.04234 1.25590 1.04729 1.03451 1.14905 1.21071 1.00164 0.93605 1.01063 1.22268 1.02911 0.98965 0.79276 1.47260 1.15424 1.55942 1.13496 1.21452 0.82948 0.79963 0.88574 1.90787 1.74251 1.57491 1.22012 1.22115 0.82718 1.04661 0.94530 1.43469 1.11889 1.12013 1.47600 1.21981 0.97117 0.89908 0.97402 1.20840 0.96012 0.96626 1.08867 1.24540 1.06650 1.03260 0.81817 1.86461 1.34842 1.93438 1.21910 0.85149 0.78566 0.74179 0.80658 1.17147 1.19752 1.17156 1.19321 0.95130 0.95040 1.02378 1.20483 0.95469 0.95363 0.98996 1.20927 1.00687 0.94943 1.00738 1.21126 0.92550 1.00473 0.98337 1.20227 0.98886 0.92269 1.04365 1.18410 0.88013 0.93433 1.01514 1.20695 0.95309 0.90279 0.93167 1.27029 1.05731 1.03248 1.18713 0.90784 0.91783 0.90272 0.92218 0.92115 0.90799 0.91113 0.89364 0.88503 0.90894 0.89212 0.88492 0.84052 0.82368 0.79209 0.87203 0.76820 0.85854 0.84428 0.83747 0.85276 0.87431 0.92857 0.90657 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.95 8.35 113.37 0.95 3.90 16 2 Si 1.07 -6.92 10.48 68.60 0.72 -6.20 16 3 C -0.47 0.86 8.65 113.37 0.98 1.85 16 4 C -0.40 3.55 4.83 70.98 0.34 3.90 16 5 C -0.12 1.43 5.32 30.04 0.16 1.59 16 6 C 0.09 -0.99 5.83 86.71 0.51 -0.49 16 7 N -0.59 2.20 2.45 -822.72 -2.01 0.19 16 8 C 0.48 0.94 7.27 87.66 0.64 1.57 16 9 O -0.57 -7.53 15.63 -3.04 -0.05 -7.58 16 10 C 0.08 -0.35 4.76 85.64 0.41 0.06 16 11 N -0.47 -1.84 2.27 -519.99 -1.18 -3.03 16 12 C 0.06 0.21 9.89 83.00 0.82 1.03 16 13 C -0.22 -1.49 5.58 -18.63 -0.10 -1.60 16 14 C -0.05 -0.22 3.06 71.24 0.22 0.00 16 15 O -0.56 -3.87 12.88 -148.98 -1.92 -5.78 16 16 Si 0.99 -0.12 26.08 68.60 1.79 1.67 16 17 H -0.25 0.33 7.03 99.48 0.70 1.03 16 18 H -0.27 -0.91 7.11 99.48 0.71 -0.20 16 19 H -0.25 0.14 7.11 99.48 0.71 0.85 16 20 C -0.11 -1.24 6.35 -20.20 -0.13 -1.37 16 21 C -0.08 -0.84 10.05 22.23 0.22 -0.61 16 22 C -0.15 -1.09 9.97 22.03 0.22 -0.88 16 23 C -0.11 -0.61 10.01 22.30 0.22 -0.39 16 24 C -0.14 -0.91 10.00 22.37 0.22 -0.69 16 25 C 0.09 0.81 6.79 39.03 0.27 1.07 16 26 C 0.13 -0.16 5.36 87.73 0.47 0.31 16 27 C -0.46 0.16 4.47 72.65 0.32 0.48 16 28 H 0.07 -0.50 7.96 -2.39 -0.02 -0.51 16 29 H 0.06 -0.30 7.96 -2.38 -0.02 -0.32 16 30 H 0.08 -0.66 6.53 -2.39 -0.02 -0.67 16 31 H 0.06 -0.02 7.96 -2.39 -0.02 -0.04 16 32 H 0.06 -0.03 7.96 -2.39 -0.02 -0.04 16 33 H 0.07 -0.21 7.96 -2.39 -0.02 -0.23 16 34 H 0.07 -0.54 7.90 -2.39 -0.02 -0.56 16 35 H 0.09 -0.86 7.99 -2.39 -0.02 -0.88 16 36 H 0.10 -1.36 8.14 -2.38 -0.02 -1.38 16 37 H 0.07 -0.92 5.94 -2.39 -0.01 -0.93 16 38 H 0.09 -1.29 8.14 -2.39 -0.02 -1.31 16 39 H 0.10 -1.48 5.49 -2.39 -0.01 -1.49 16 40 H 0.14 -1.28 7.44 -2.38 -0.02 -1.30 16 41 H 0.16 -1.92 7.91 -2.39 -0.02 -1.94 16 42 H 0.19 -0.60 6.29 -2.91 -0.02 -0.61 16 43 H 0.11 0.39 7.96 -2.39 -0.02 0.37 16 44 H 0.38 0.54 8.70 -74.05 -0.64 -0.10 16 45 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 46 H 0.14 0.38 8.06 -2.91 -0.02 0.36 16 47 H 0.14 0.09 8.06 -2.91 -0.02 0.07 16 48 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 49 H 0.11 -0.75 7.14 -2.39 -0.02 -0.77 16 50 H 0.05 0.25 7.45 -2.39 -0.02 0.23 16 51 H 0.07 0.05 7.89 -2.39 -0.02 0.03 16 52 H 0.05 0.29 7.28 -2.39 -0.02 0.27 16 Total: 0.00 -24.92 407.84 5.10 -19.82 By element: Atomic # 1 Polarization: -9.84 SS G_CDS: 1.02 Total: -8.83 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 6.74 Total: 9.73 kcal Atomic # 7 Polarization: 0.36 SS G_CDS: -3.20 Total: -2.84 kcal Atomic # 8 Polarization: -11.39 SS G_CDS: -1.97 Total: -13.36 kcal Atomic # 14 Polarization: -7.03 SS G_CDS: 2.51 Total: -4.52 kcal Total: -24.92 5.10 -19.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915400_9818708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.739 kcal (2) G-P(sol) polarization free energy of solvation -24.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds