Wall clock time and date at job start Thu Mar 4 2021 12:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86307 * 111.63857 * 2 1 4 4 C 1.90172 * 111.97332 * 126.44645 * 2 1 3 5 5 C 1.55212 * 98.86219 * 88.86184 * 4 2 1 6 6 N 1.45017 * 116.01047 * 20.25113 * 5 4 2 7 7 C 1.34777 * 120.85988 * 180.84542 * 6 5 4 8 8 O 1.21593 * 120.00009 * 185.20203 * 7 6 5 9 9 C 1.47576 * 119.99994 * 5.20587 * 7 6 5 10 10 C 1.36492 * 120.01480 * 75.26011 * 9 7 6 11 11 N 1.35943 * 120.50786 * 180.24933 * 10 9 7 12 12 C 1.37004 * 132.41527 * 179.67581 * 11 10 9 13 13 C 1.50704 * 126.42716 * 0.04856 * 12 11 10 14 14 O 1.42897 * 109.47111 * 29.99478 * 13 12 11 15 15 Si 1.86300 * 109.47154 * 149.99859 * 13 12 11 16 16 H 1.48500 * 109.47043 * 59.99810 * 15 13 12 17 17 H 1.48501 * 109.47055 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47022 * 299.99807 * 15 13 12 19 19 C 1.35000 * 107.14495 * 180.02562 * 12 11 10 20 20 N 1.33597 * 108.65247 * 359.43718 * 19 12 11 21 21 C 1.32417 * 109.21898 * 0.67728 * 20 19 12 22 22 C 1.41251 * 132.11318 * 179.23579 * 21 20 19 23 23 Br 1.89105 * 120.25604 * 359.97438 * 22 21 20 24 24 C 1.35708 * 119.48817 * 180.02562 * 22 21 20 25 25 C 1.48273 * 118.27794 * 1.11249 * 6 5 4 26 26 H 1.09005 * 109.47199 * 293.55662 * 1 2 3 27 27 H 1.09005 * 109.46957 * 53.55124 * 1 2 3 28 28 H 1.08992 * 109.47152 * 173.54975 * 1 2 3 29 29 H 1.09001 * 109.46682 * 186.44820 * 3 2 1 30 30 H 1.08997 * 109.46900 * 306.44440 * 3 2 1 31 31 H 1.08998 * 109.46987 * 66.45164 * 3 2 1 32 32 H 1.09001 * 111.51598 * 331.45059 * 4 2 1 33 33 H 1.08998 * 111.57093 * 206.29711 * 4 2 1 34 34 H 1.09004 * 108.15029 * 258.59468 * 5 4 2 35 35 H 1.08993 * 108.12340 * 141.88425 * 5 4 2 36 36 H 1.08005 * 119.74467 * 359.97438 * 10 9 7 37 37 H 1.09000 * 109.46999 * 269.99769 * 13 12 11 38 38 H 0.96703 * 113.99978 * 60.00627 * 14 13 12 39 39 H 1.07998 * 125.67346 * 180.02562 * 19 12 11 40 40 H 1.07995 * 120.23301 * 179.97438 * 24 22 21 41 41 H 1.08997 * 111.30190 * 95.92688 * 25 6 5 42 42 H 1.09003 * 111.30585 * 220.54189 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5500 1.7318 0.0000 4 6 2.5745 -1.0477 1.4186 5 6 2.6358 -2.4196 0.6953 6 7 2.6236 -2.3754 -0.7541 7 6 2.6563 -3.5101 -1.4807 8 8 2.7410 -3.4540 -2.6924 9 6 2.5891 -4.8207 -0.8056 10 6 1.4016 -5.2712 -0.3057 11 7 1.3293 -6.4746 0.3225 12 6 0.2917 -7.1500 0.9091 13 6 -1.1381 -6.6837 1.0068 14 8 -1.4462 -5.8539 -0.1150 15 14 -2.2736 -8.1606 1.0175 16 1 -1.9533 -9.0228 2.1834 17 1 -3.6825 -7.7011 1.1132 18 1 -2.0901 -8.9351 -0.2362 19 6 0.7901 -8.3117 1.3827 20 7 2.0928 -8.3680 1.0916 21 6 2.4453 -7.2620 0.4545 22 6 3.6851 -6.8165 -0.0550 23 35 5.2315 -7.8893 0.1286 24 6 3.7581 -5.6123 -0.6764 25 6 2.5804 -1.0494 -1.4161 26 1 -0.3634 0.4107 0.9421 27 1 -0.3633 0.6106 -0.8267 28 1 -0.3633 -1.0211 -0.1154 29 1 3.6332 1.6929 -0.1154 30 1 2.1165 2.2946 -0.8267 31 1 2.3023 2.2209 0.9421 32 1 1.8981 -1.0761 2.2729 33 1 3.5672 -0.7052 1.7108 34 1 1.7841 -3.0151 1.0241 35 1 3.5456 -2.9295 1.0119 36 1 0.5135 -4.6648 -0.4060 37 1 -1.2727 -6.1152 1.9270 38 1 -1.3480 -6.2956 -0.9697 39 1 0.2273 -9.0736 1.9015 40 1 4.6999 -5.2598 -1.0701 41 1 3.5791 -0.7129 -1.6944 42 1 1.9138 -1.0588 -2.2785 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915426_12335884.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:37:13 Heat of formation + Delta-G solvation = 7.312924 kcal Electronic energy + Delta-G solvation = -27150.817495 eV Core-core repulsion = 23302.688587 eV Total energy + Delta-G solvation = -3848.128908 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 397.037 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.27816 -41.27727 -38.55782 -38.00951 -37.25774 -35.33475 -32.74752 -31.83782 -31.21111 -30.45809 -29.14638 -28.40704 -27.76896 -26.91160 -25.22158 -24.10071 -23.53633 -22.50411 -20.74529 -19.41240 -18.88617 -18.12576 -17.73306 -17.49019 -17.19790 -16.80254 -16.30597 -15.98554 -15.88189 -15.44430 -15.22239 -14.87056 -14.58768 -14.40906 -14.12751 -13.90287 -13.70537 -13.68169 -13.47027 -13.43476 -13.30083 -13.14861 -13.14194 -13.02949 -12.72430 -12.48312 -12.12165 -12.06260 -11.62527 -11.51368 -11.36527 -11.25811 -10.90349 -10.87461 -10.85297 -10.52658 -10.05717 -9.68047 -9.09288 -0.86741 -0.31508 0.14020 0.86904 1.04940 1.39811 1.40494 1.51134 1.53408 1.59426 1.74552 1.87573 1.95734 1.97678 2.05829 2.42840 2.78761 2.96846 3.09390 3.33491 3.45854 3.47971 3.80171 3.83135 4.08922 4.16474 4.28820 4.32005 4.46823 4.50461 4.59412 4.69334 4.81112 4.82053 4.85816 4.87345 4.92754 4.97498 5.06879 5.16181 5.26501 5.45458 5.56558 5.59801 5.67034 6.06795 6.35456 6.48903 6.81648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.454 4.454 2 Si 1.073 2.927 3 C -0.451 4.451 4 C -0.402 4.402 5 C 0.091 3.909 6 N -0.583 5.583 7 C 0.573 3.427 8 O -0.561 6.561 9 C -0.154 4.154 10 C 0.135 3.865 11 N -0.350 5.350 12 C -0.080 4.080 13 C -0.045 4.045 14 O -0.550 6.550 15 Si 1.005 2.995 16 H -0.239 1.239 17 H -0.258 1.258 18 H -0.268 1.268 19 C 0.028 3.972 20 N -0.495 5.495 21 C 0.223 3.777 22 C -0.073 4.073 23 Br 0.001 6.999 24 C -0.027 4.027 25 C -0.208 4.208 26 H 0.085 0.915 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.203 0.797 37 H 0.147 0.853 38 H 0.389 0.611 39 H 0.210 0.790 40 H 0.164 0.836 41 H 0.075 0.925 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.509 6.184 4.975 9.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.563 4.563 2 Si 1.263 2.737 3 C -0.560 4.560 4 C -0.487 4.487 5 C -0.031 4.031 6 N -0.314 5.314 7 C 0.359 3.641 8 O -0.440 6.440 9 C -0.161 4.161 10 C 0.010 3.990 11 N -0.023 5.023 12 C -0.191 4.191 13 C -0.154 4.154 14 O -0.356 6.356 15 Si 0.825 3.175 16 H -0.162 1.162 17 H -0.182 1.182 18 H -0.192 1.192 19 C -0.122 4.122 20 N -0.214 5.214 21 C -0.022 4.022 22 C -0.156 4.156 23 Br 0.087 6.913 24 C -0.053 4.053 25 C -0.371 4.371 26 H 0.104 0.896 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.132 0.868 33 H 0.118 0.882 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.220 0.780 37 H 0.164 0.836 38 H 0.238 0.762 39 H 0.227 0.773 40 H 0.182 0.818 41 H 0.094 0.906 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.120 4.858 5.092 8.154 hybrid contribution 0.130 0.272 -1.146 1.185 sum -3.990 5.129 3.946 7.602 Atomic orbital electron populations 1.26127 1.19919 1.04700 1.05506 0.79370 0.66438 0.65461 0.62435 1.26074 1.07031 1.17496 1.05445 1.26695 1.09009 1.02653 1.10344 1.21300 1.02858 1.01059 0.77858 1.48134 1.70774 1.05316 1.07206 1.17747 0.76787 0.83545 0.86027 1.90844 1.50872 1.87263 1.15042 1.19286 0.93633 0.97657 1.05565 1.22111 1.00039 0.85347 0.91511 1.42645 1.09428 1.13717 1.36512 1.22457 0.92124 0.95965 1.08600 1.24977 0.89812 1.06860 0.93782 1.86450 1.90558 1.41557 1.17056 0.84920 0.77100 0.73854 0.81588 1.16164 1.18180 1.19215 1.22931 0.90636 0.97084 1.01565 1.70810 1.14538 1.18961 1.17135 1.20492 0.88165 0.90021 1.03528 1.20469 0.91077 0.97288 1.06730 1.96816 1.29181 1.68296 1.97034 1.21063 0.99323 0.90726 0.94175 1.27755 1.07136 0.90786 1.11416 0.89640 0.90809 0.91462 0.90764 0.90764 0.89784 0.86760 0.88232 0.90873 0.91835 0.78042 0.83607 0.76162 0.77320 0.81844 0.90631 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 3.80 8.65 113.37 0.98 4.78 16 2 Si 1.07 -11.05 13.66 68.60 0.94 -10.11 16 3 C -0.45 4.11 8.65 113.37 0.98 5.09 16 4 C -0.40 3.96 6.06 72.74 0.44 4.40 16 5 C 0.09 -0.46 5.19 87.42 0.45 0.00 16 6 N -0.58 0.02 3.08 -626.78 -1.93 -1.90 16 7 C 0.57 3.23 7.08 86.71 0.61 3.85 16 8 O -0.56 -7.99 17.07 -4.01 -0.07 -8.06 16 9 C -0.15 -0.47 4.48 -20.35 -0.09 -0.56 16 10 C 0.13 0.06 9.15 83.65 0.76 0.82 16 11 N -0.35 -1.01 2.93 -337.71 -0.99 -2.00 16 12 C -0.08 0.01 6.24 41.01 0.26 0.27 16 13 C -0.04 0.27 3.06 71.24 0.22 0.49 16 14 O -0.55 3.00 10.90 -148.98 -1.62 1.38 16 15 Si 1.01 -5.92 26.60 68.60 1.82 -4.09 16 16 H -0.24 1.53 6.84 99.48 0.68 2.21 16 17 H -0.26 0.90 7.11 99.48 0.71 1.61 16 18 H -0.27 0.67 7.11 99.48 0.71 1.38 16 19 C 0.03 0.07 10.44 83.68 0.87 0.95 16 20 N -0.50 -4.55 11.31 -194.10 -2.19 -6.75 16 21 C 0.22 1.71 7.59 134.19 1.02 2.73 16 22 C -0.07 -0.48 6.24 22.42 0.14 -0.34 16 23 Br 0.00 0.01 33.72 -20.37 -0.69 -0.68 16 24 C -0.03 -0.11 9.54 22.56 0.22 0.11 16 25 C -0.21 0.41 5.73 127.43 0.73 1.14 16 26 H 0.08 -0.82 7.96 -2.38 -0.02 -0.84 16 27 H 0.07 -0.56 7.96 -2.38 -0.02 -0.57 16 28 H 0.07 -0.45 7.96 -2.39 -0.02 -0.47 16 29 H 0.07 -0.62 7.96 -2.39 -0.02 -0.64 16 30 H 0.07 -0.62 7.96 -2.39 -0.02 -0.64 16 31 H 0.08 -0.84 7.96 -2.39 -0.02 -0.85 16 32 H 0.11 -1.42 8.06 -2.39 -0.02 -1.44 16 33 H 0.10 -1.03 8.06 -2.39 -0.02 -1.05 16 34 H 0.07 -0.48 7.13 -2.39 -0.02 -0.50 16 35 H 0.06 -0.24 8.11 -2.39 -0.02 -0.26 16 36 H 0.20 -0.77 6.70 -2.91 -0.02 -0.79 16 37 H 0.15 -1.40 7.96 -2.39 -0.02 -1.42 16 38 H 0.39 -3.60 8.70 -74.06 -0.64 -4.24 16 39 H 0.21 -0.68 6.72 -2.91 -0.02 -0.70 16 40 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 41 H 0.08 -0.10 8.06 -2.39 -0.02 -0.12 16 42 H 0.08 0.04 7.90 -2.39 -0.02 0.02 16 Total: 0.00 -21.56 371.66 4.01 -17.55 By element: Atomic # 1 Polarization: -10.20 SS G_CDS: 1.14 Total: -9.06 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 7.59 Total: 23.73 kcal Atomic # 7 Polarization: -5.54 SS G_CDS: -5.11 Total: -10.65 kcal Atomic # 8 Polarization: -4.99 SS G_CDS: -1.69 Total: -6.68 kcal Atomic # 14 Polarization: -16.97 SS G_CDS: 2.76 Total: -14.21 kcal Atomic # 35 Polarization: 0.01 SS G_CDS: -0.69 Total: -0.68 kcal Total: -21.56 4.01 -17.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915426_12335884.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.864 kcal (2) G-P(sol) polarization free energy of solvation -21.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds