Wall clock time and date at job start Thu Mar 4 2021 12:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86294 * 110.00891 * 2 1 4 4 C 1.87573 * 110.02941 * 121.38482 * 2 1 3 5 5 C 1.53925 * 106.83643 * 163.10563 * 4 2 1 6 6 N 1.46443 * 109.45687 * 301.99180 * 5 4 2 7 7 N 1.36610 * 111.00083 * 204.96910 * 6 5 4 8 8 C 1.34769 * 120.00075 * 119.99801 * 7 6 5 9 9 O 1.21726 * 120.00104 * 0.02562 * 8 7 6 10 10 C 1.46566 * 120.00075 * 180.02562 * 8 7 6 11 11 C 1.40852 * 126.58085 * 180.02562 * 10 8 7 12 12 C 1.40092 * 132.86624 * 0.28663 * 11 10 8 13 13 C 1.36443 * 119.25454 * 180.24216 * 12 11 10 14 14 C 1.50699 * 120.29509 * 179.71463 * 13 12 11 15 15 O 1.42903 * 109.47152 * 119.73265 * 14 13 12 16 16 Si 1.86305 * 109.47184 * 239.72737 * 14 13 12 17 17 H 1.48499 * 109.47126 * 300.00092 * 16 14 13 18 18 H 1.48496 * 109.46885 * 60.00303 * 16 14 13 19 19 H 1.48499 * 109.46850 * 180.02562 * 16 14 13 20 20 C 1.40159 * 119.41080 * 359.45168 * 13 12 11 21 21 C 1.35190 * 120.31698 * 0.28777 * 20 13 12 22 22 N 1.36244 * 120.70742 * 0.02562 * 21 20 13 23 23 N 1.40015 * 132.01348 * 179.97438 * 22 21 20 24 24 C 1.30741 * 109.60050 * 180.02562 * 23 22 21 25 25 C 1.46448 * 113.64273 * 79.02371 * 6 5 4 26 26 C 1.53923 * 109.45445 * 280.97814 * 25 6 5 27 27 H 1.09000 * 109.47170 * 298.61294 * 1 2 3 28 28 H 1.08995 * 109.47318 * 58.61939 * 1 2 3 29 29 H 1.09004 * 109.46812 * 178.61577 * 1 2 3 30 30 H 1.08999 * 109.47170 * 181.37998 * 3 2 1 31 31 H 1.08995 * 109.47519 * 301.38651 * 3 2 1 32 32 H 1.09001 * 109.47242 * 61.38925 * 3 2 1 33 33 H 1.09003 * 109.97967 * 43.77511 * 4 2 1 34 34 H 1.09003 * 110.05553 * 282.47714 * 4 2 1 35 35 H 1.08996 * 109.47509 * 181.99595 * 5 4 2 36 36 H 1.08996 * 109.47412 * 61.98754 * 5 4 2 37 37 H 0.97002 * 119.99585 * 300.00086 * 7 6 5 38 38 H 1.07998 * 120.37399 * 359.96594 * 12 11 10 39 39 H 1.08997 * 109.47198 * 359.72943 * 14 13 12 40 40 H 0.96700 * 114.00311 * 180.02562 * 15 14 13 41 41 H 1.08004 * 119.84694 * 180.27467 * 20 13 12 42 42 H 1.07997 * 119.64791 * 179.97438 * 21 20 13 43 43 H 1.08005 * 125.62426 * 179.97438 * 24 23 22 44 44 H 1.08994 * 109.47090 * 40.97007 * 25 6 5 45 45 H 1.08993 * 109.47296 * 160.98313 * 25 6 5 46 46 H 1.09002 * 109.97991 * 298.67568 * 26 25 6 47 47 H 1.09006 * 110.05494 * 177.38270 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5005 1.7505 0.0000 4 6 2.5055 -0.9178 1.5044 5 6 3.9826 -1.2500 1.2269 6 7 4.0816 -2.0464 0.0019 7 7 5.2167 -2.8065 0.0026 8 6 5.1286 -4.1492 -0.0716 9 8 4.0376 -4.6847 -0.1396 10 6 6.3464 -4.9648 -0.0703 11 6 6.4158 -6.3697 -0.1425 12 6 5.4382 -7.3687 -0.2366 13 6 5.8238 -8.6766 -0.2854 14 6 4.7916 -9.7704 -0.3802 15 8 4.9980 -10.5174 -1.5809 16 14 4.9499 -10.9030 1.0905 17 1 6.3078 -11.5040 1.1086 18 1 4.7354 -10.1269 2.3382 19 1 3.9332 -11.9812 0.9967 20 6 7.1887 -8.9934 -0.2521 21 6 8.1151 -8.0125 -0.1665 22 7 7.7397 -6.7040 -0.1108 23 7 8.4808 -5.5195 -0.0207 24 6 7.6690 -4.4950 0.0045 25 6 3.9826 -1.2522 -1.2245 26 6 2.5055 -0.9205 -1.5027 27 1 -0.3633 0.4921 0.9022 28 1 -0.3634 0.5351 -0.8773 29 1 -0.3633 -1.0274 -0.0248 30 1 3.5901 1.7404 -0.0247 31 1 2.1219 2.2751 -0.8772 32 1 2.1624 2.2603 0.9022 33 1 1.9381 -1.8370 1.6503 34 1 2.4257 -0.2867 2.3896 35 1 4.3908 -1.8174 2.0632 36 1 4.5464 -0.3251 1.1056 37 1 6.0861 -2.3797 0.0564 38 1 4.3908 -7.1067 -0.2657 39 1 3.7949 -9.3294 -0.3935 40 1 4.3677 -11.2396 -1.7081 41 1 7.5020 -10.0261 -0.2948 42 1 9.1639 -8.2690 -0.1412 43 1 7.9657 -3.4587 0.0709 44 1 4.5465 -0.3271 -1.1048 45 1 4.3908 -1.8211 -2.0598 46 1 1.9381 -1.8399 -1.6469 47 1 2.4243 -0.2902 -2.3884 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_11618758.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:54:45 Heat of formation + Delta-G solvation = 41.392138 kcal Electronic energy + Delta-G solvation = -28348.367617 eV Core-core repulsion = 24465.033349 eV Total energy + Delta-G solvation = -3883.334269 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.153 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.33517 -40.83371 -39.21970 -38.37496 -37.26138 -34.38511 -33.94900 -32.18964 -32.10789 -30.61504 -29.26144 -28.33448 -28.23179 -27.03657 -24.92990 -23.89661 -23.71742 -22.97458 -21.98049 -21.27471 -19.29289 -18.68501 -18.39640 -17.80706 -17.33599 -17.01068 -16.76721 -16.50219 -16.00004 -15.84086 -15.71499 -15.18971 -15.06690 -14.67371 -14.33367 -14.20506 -14.15260 -13.94788 -13.76244 -13.56940 -13.51651 -13.32511 -13.18036 -13.06799 -13.03238 -12.97012 -12.77941 -12.58491 -12.25982 -12.20828 -12.11069 -11.85284 -11.60260 -10.98951 -10.76070 -10.75299 -10.43822 -10.30911 -10.18587 -10.17619 -9.60731 -8.83175 -0.60927 -0.14125 0.97430 1.00665 1.11343 1.49238 1.52776 1.72927 1.82608 1.91237 1.98381 2.03873 2.09513 2.49872 2.69515 3.00916 3.13480 3.41624 3.51506 3.69783 3.72378 3.88082 3.94353 4.18996 4.22202 4.30397 4.31789 4.36249 4.36687 4.48418 4.58889 4.70097 4.71038 4.76803 4.83401 4.84282 4.87311 4.87791 4.92150 5.03457 5.11389 5.14115 5.24016 5.46419 5.47372 5.60864 5.62777 5.67763 5.99033 6.25093 6.33113 6.54113 6.76770 7.63239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.461 4.461 2 Si 1.063 2.937 3 C -0.450 4.450 4 C -0.412 4.412 5 C 0.054 3.946 6 N -0.335 5.335 7 N -0.567 5.567 8 C 0.615 3.385 9 O -0.569 6.569 10 C -0.336 4.336 11 C 0.152 3.848 12 C -0.119 4.119 13 C -0.025 4.025 14 C -0.086 4.086 15 O -0.555 6.555 16 Si 0.986 3.014 17 H -0.243 1.243 18 H -0.275 1.275 19 H -0.242 1.242 20 C -0.146 4.146 21 C 0.111 3.889 22 N -0.273 5.273 23 N -0.337 5.337 24 C 0.131 3.869 25 C 0.054 3.946 26 C -0.414 4.414 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.395 0.605 38 H 0.153 0.847 39 H 0.091 0.909 40 H 0.404 0.596 41 H 0.190 0.810 42 H 0.207 0.793 43 H 0.234 0.766 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.691 -0.043 0.812 1.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.568 4.568 2 Si 1.255 2.745 3 C -0.558 4.558 4 C -0.497 4.497 5 C -0.073 4.073 6 N -0.153 5.153 7 N -0.311 5.311 8 C 0.405 3.595 9 O -0.448 6.448 10 C -0.352 4.352 11 C 0.031 3.969 12 C -0.139 4.139 13 C -0.031 4.031 14 C -0.195 4.195 15 O -0.364 6.364 16 Si 0.806 3.194 17 H -0.166 1.166 18 H -0.200 1.200 19 H -0.165 1.165 20 C -0.167 4.167 21 C -0.015 4.015 22 N -0.036 5.036 23 N -0.158 5.158 24 C -0.049 4.049 25 C -0.073 4.073 26 C -0.499 4.499 27 H 0.091 0.909 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.235 0.765 38 H 0.170 0.830 39 H 0.109 0.891 40 H 0.255 0.745 41 H 0.207 0.793 42 H 0.224 0.776 43 H 0.250 0.750 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.457 -1.113 1.423 3.050 hybrid contribution -0.443 0.893 -0.375 1.065 sum 2.015 -0.220 1.048 2.282 Atomic orbital electron populations 1.26234 1.21813 1.04112 1.04622 0.78617 0.65601 0.65488 0.64836 1.26138 1.06502 1.18281 1.04898 1.26451 0.98895 1.08410 1.15960 1.22276 0.98424 0.96182 0.90400 1.61390 1.23412 1.27085 1.03460 1.44704 1.04905 1.04443 1.77092 1.16843 0.87099 0.80747 0.74835 1.90731 1.29999 1.72556 1.51502 1.19538 0.94193 0.90817 1.30634 1.19456 0.85225 0.94576 0.97642 1.20680 1.00059 0.90228 1.02926 1.19772 0.95264 0.93501 0.94571 1.24812 0.98906 0.97056 0.98710 1.86434 1.60201 1.49764 1.40049 0.85199 0.82150 0.77886 0.74128 1.16609 1.20037 1.16472 1.21216 0.91019 1.01452 1.03001 1.22245 1.03543 0.77543 0.98155 1.46305 1.05259 1.07039 1.45026 1.77562 1.18015 0.88429 1.31767 1.24590 0.88956 1.00156 0.91242 1.22275 0.98328 0.96149 0.90523 1.26473 0.98940 1.08375 1.16073 0.90932 0.91002 0.91987 0.90957 0.90861 0.90756 0.91403 0.88651 0.91213 0.91556 0.76463 0.82952 0.89056 0.74487 0.79270 0.77594 0.74963 0.91650 0.91749 0.91533 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.43 8.65 113.37 0.98 1.41 16 2 Si 1.06 -3.95 11.76 68.60 0.81 -3.14 16 3 C -0.45 2.12 8.65 113.37 0.98 3.10 16 4 C -0.41 0.15 5.24 72.29 0.38 0.53 16 5 C 0.05 0.03 5.61 86.70 0.49 0.51 16 6 N -0.33 -1.48 4.00 -512.70 -2.05 -3.54 16 7 N -0.57 -2.19 4.62 -176.45 -0.82 -3.01 16 8 C 0.61 6.53 7.89 86.42 0.68 7.22 16 9 O -0.57 -10.63 16.03 -4.43 -0.07 -10.70 16 10 C -0.34 -2.71 6.17 -19.90 -0.12 -2.84 16 11 C 0.15 1.40 6.76 39.49 0.27 1.67 16 12 C -0.12 -0.88 9.35 22.30 0.21 -0.67 16 13 C -0.03 -0.06 4.53 -19.82 -0.09 -0.15 16 14 C -0.09 0.20 2.81 71.24 0.20 0.40 16 15 O -0.55 1.56 12.76 -148.98 -1.90 -0.34 16 16 Si 0.99 -3.66 27.26 68.60 1.87 -1.79 16 17 H -0.24 0.92 7.04 99.48 0.70 1.62 16 18 H -0.28 -0.25 7.11 99.48 0.71 0.46 16 19 H -0.24 1.04 7.11 99.48 0.71 1.75 16 20 C -0.15 0.15 8.67 22.03 0.19 0.34 16 21 C 0.11 0.02 11.17 83.30 0.93 0.95 16 22 N -0.27 -1.78 3.86 -187.27 -0.72 -2.50 16 23 N -0.34 -2.24 12.57 -56.61 -0.71 -2.95 16 24 C 0.13 0.36 11.44 85.42 0.98 1.34 16 25 C 0.05 0.07 5.61 86.70 0.49 0.56 16 26 C -0.41 -0.15 5.24 72.29 0.38 0.23 16 27 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 28 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 29 H 0.06 0.07 7.96 -2.38 -0.02 0.06 16 30 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 31 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 32 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 33 H 0.07 0.27 7.99 -2.39 -0.02 0.25 16 34 H 0.09 -0.32 8.00 -2.39 -0.02 -0.34 16 35 H 0.07 0.16 8.04 -2.39 -0.02 0.14 16 36 H 0.07 -0.30 7.58 -2.39 -0.02 -0.31 16 37 H 0.39 -1.34 7.75 -215.49 -1.67 -3.01 16 38 H 0.15 1.38 7.01 -2.91 -0.02 1.36 16 39 H 0.09 -0.36 7.71 -2.39 -0.02 -0.38 16 40 H 0.40 -4.74 8.74 -74.06 -0.65 -5.39 16 41 H 0.19 -1.29 7.50 -2.91 -0.02 -1.31 16 42 H 0.21 -1.39 8.06 -2.91 -0.02 -1.41 16 43 H 0.23 -1.67 7.46 -2.91 -0.02 -1.69 16 44 H 0.07 -0.24 7.58 -2.39 -0.02 -0.26 16 45 H 0.06 0.26 8.04 -2.39 -0.02 0.24 16 46 H 0.07 0.33 7.99 -2.39 -0.02 0.31 16 47 H 0.09 -0.22 7.99 -2.38 -0.02 -0.24 16 Total: 0.00 -25.70 387.11 2.76 -22.93 By element: Atomic # 1 Polarization: -8.99 SS G_CDS: -0.57 Total: -9.56 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: 6.94 Total: 14.60 kcal Atomic # 7 Polarization: -7.70 SS G_CDS: -4.30 Total: -12.00 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: -1.97 Total: -11.04 kcal Atomic # 14 Polarization: -7.62 SS G_CDS: 2.68 Total: -4.94 kcal Total: -25.70 2.76 -22.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_11618758.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.326 kcal (2) G-P(sol) polarization free energy of solvation -25.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds