Wall clock time and date at job start Thu Mar 4 2021 12:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86302 * 110.01285 * 2 1 4 4 C 1.87571 * 110.03115 * 121.38709 * 2 1 3 5 5 C 1.53920 * 106.83956 * 163.10266 * 4 2 1 6 6 N 1.46445 * 109.45974 * 301.99270 * 5 4 2 7 7 N 1.36600 * 111.00274 * 204.96943 * 6 5 4 8 8 C 1.34777 * 120.00100 * 119.99375 * 7 6 5 9 9 O 1.21593 * 119.99953 * 0.02562 * 8 7 6 10 10 C 1.47581 * 120.00214 * 180.27822 * 8 7 6 11 11 C 1.40204 * 119.82999 * 359.45246 * 10 8 7 12 12 C 1.36229 * 120.37884 * 179.71603 * 11 10 8 13 13 C 1.39873 * 119.95840 * 0.55820 * 12 11 10 14 14 C 1.46258 * 133.84316 * 179.69465 * 13 12 11 15 15 C 1.50699 * 126.48551 * 0.02562 * 14 13 12 16 16 O 1.42900 * 109.47212 * 285.00558 * 15 14 13 17 17 Si 1.86300 * 109.47400 * 165.00128 * 15 14 13 18 18 H 1.48500 * 109.46961 * 300.00311 * 17 15 14 19 19 H 1.48498 * 109.46920 * 60.00292 * 17 15 14 20 20 H 1.48505 * 109.47117 * 180.02562 * 17 15 14 21 21 C 1.34455 * 107.03853 * 180.02562 * 14 13 12 22 22 N 1.36571 * 109.98041 * 359.97438 * 21 14 13 23 23 C 1.37821 * 109.85919 * 359.97438 * 22 21 14 24 24 C 1.38656 * 133.37485 * 179.97438 * 23 22 21 25 25 C 1.46443 * 113.64127 * 79.01920 * 6 5 4 26 26 C 1.53930 * 109.45860 * 280.97869 * 25 6 5 27 27 H 1.09001 * 109.47115 * 298.61975 * 1 2 3 28 28 H 1.09004 * 109.46822 * 58.61269 * 1 2 3 29 29 H 1.08992 * 109.47299 * 178.61415 * 1 2 3 30 30 H 1.09001 * 109.47014 * 181.38588 * 3 2 1 31 31 H 1.09003 * 109.47154 * 301.38551 * 3 2 1 32 32 H 1.09001 * 109.47035 * 61.38628 * 3 2 1 33 33 H 1.08996 * 109.97970 * 43.76695 * 4 2 1 34 34 H 1.09000 * 110.05379 * 282.47308 * 4 2 1 35 35 H 1.08998 * 109.47781 * 181.99913 * 5 4 2 36 36 H 1.09005 * 109.47970 * 61.98946 * 5 4 2 37 37 H 0.97000 * 120.00163 * 300.00044 * 7 6 5 38 38 H 1.08010 * 119.81195 * 359.97438 * 11 10 8 39 39 H 1.08003 * 120.01959 * 180.27677 * 12 11 10 40 40 H 1.08999 * 109.46862 * 45.00138 * 15 14 13 41 41 H 0.96703 * 113.99795 * 180.02562 * 16 15 14 42 42 H 1.07993 * 125.01379 * 179.97438 * 21 14 13 43 43 H 0.97006 * 125.06410 * 180.02562 * 22 21 14 44 44 H 1.07992 * 120.16408 * 0.05123 * 24 23 22 45 45 H 1.08991 * 109.47407 * 40.97991 * 25 6 5 46 46 H 1.09001 * 109.47245 * 160.98793 * 25 6 5 47 47 H 1.08995 * 109.98184 * 298.67832 * 26 25 6 48 48 H 1.08998 * 109.97969 * 177.34005 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5006 1.7505 0.0000 4 6 2.5055 -0.9178 1.5044 5 6 3.9825 -1.2501 1.2268 6 7 4.0816 -2.0464 0.0018 7 7 5.2166 -2.8066 0.0025 8 6 5.1284 -4.1494 -0.0716 9 8 4.0385 -4.6842 -0.1395 10 6 6.3543 -4.9710 -0.0647 11 6 7.6094 -4.3503 0.0074 12 6 8.7481 -5.0980 0.0203 13 6 8.6686 -6.4927 -0.0504 14 6 9.6635 -7.5647 -0.0649 15 6 11.1600 -7.3993 0.0000 16 8 11.6435 -6.9372 -1.2628 17 14 11.9489 -9.0376 0.4054 18 1 11.4465 -9.5177 1.7178 19 1 11.6055 -10.0264 -0.6479 20 1 13.4236 -8.8744 0.4700 21 6 8.9905 -8.7257 -0.1472 22 7 7.6468 -8.4845 -0.1860 23 6 7.4129 -7.1275 -0.1276 24 6 6.2588 -6.3591 -0.1335 25 6 3.9826 -1.2522 -1.2246 26 6 2.5054 -0.9205 -1.5028 27 1 -0.3633 0.4922 0.9021 28 1 -0.3633 0.5353 -0.8773 29 1 -0.3633 -1.0273 -0.0249 30 1 3.5902 1.7403 -0.0249 31 1 2.1220 2.2751 -0.8773 32 1 2.1625 2.2603 0.9022 33 1 1.9380 -1.8369 1.6503 34 1 2.4257 -0.2867 2.3895 35 1 4.3908 -1.8176 2.0631 36 1 4.5466 -0.3252 1.1055 37 1 6.0860 -2.3799 0.0563 38 1 7.6738 -3.2732 0.0572 39 1 9.7117 -4.6140 0.0805 40 1 11.4121 -6.6735 0.7732 41 1 12.6014 -6.8086 -1.2941 42 1 9.4453 -9.7047 -0.1782 43 1 6.9596 -9.1666 -0.2450 44 1 5.2908 -6.8342 -0.1932 45 1 4.5465 -0.3272 -1.1049 46 1 4.3907 -1.8212 -2.0599 47 1 1.9380 -1.8399 -1.6470 48 1 2.4257 -0.2897 -2.3881 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_22_16915442_12335838.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:54:55 Heat of formation + Delta-G solvation = -4.996468 kcal Electronic energy + Delta-G solvation = -27823.323453 eV Core-core repulsion = 24003.403535 eV Total energy + Delta-G solvation = -3819.919919 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 347.158 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.41665 -40.94427 -38.73069 -37.71881 -37.32461 -34.05416 -33.30058 -32.14523 -30.83861 -30.69805 -29.33994 -28.45276 -28.07794 -26.42958 -24.45491 -23.92170 -23.56431 -22.05822 -21.32383 -20.58039 -19.24005 -18.76502 -18.41614 -17.91916 -16.99841 -16.61203 -16.27223 -16.02938 -15.62297 -15.56327 -15.15042 -14.95011 -14.79106 -14.72625 -14.64679 -14.28025 -14.17131 -14.01734 -13.81493 -13.65113 -13.52185 -13.28351 -13.19469 -13.11879 -13.06404 -12.83084 -12.58831 -12.53218 -12.28587 -12.22636 -12.06382 -11.81213 -10.90667 -10.76685 -10.68448 -10.48694 -10.27892 -10.25188 -10.14142 -9.61304 -9.29791 -8.75688 -0.18851 0.45021 1.13222 1.36876 1.39265 1.51019 1.64126 1.73071 1.87147 1.87805 1.93031 2.08695 2.14102 2.61397 3.00975 3.34219 3.54604 3.62744 3.76028 3.81754 4.01878 4.12236 4.16729 4.26912 4.29568 4.31556 4.38241 4.43982 4.53954 4.62323 4.65807 4.68191 4.70416 4.71637 4.77478 4.79303 4.80919 4.88826 4.98871 5.04043 5.28077 5.39109 5.44657 5.47918 5.52674 5.54090 5.56531 5.65875 5.95528 6.03565 6.40296 6.42126 6.53831 6.65185 7.67041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.444 4.444 2 Si 0.996 3.004 3 C -0.448 4.448 4 C -0.398 4.398 5 C 0.056 3.944 6 N -0.313 5.313 7 N -0.577 5.577 8 C 0.579 3.421 9 O -0.511 6.511 10 C -0.117 4.117 11 C -0.115 4.115 12 C -0.071 4.071 13 C -0.061 4.061 14 C -0.167 4.167 15 C -0.044 4.044 16 O -0.546 6.546 17 Si 0.941 3.059 18 H -0.249 1.249 19 H -0.249 1.249 20 H -0.253 1.253 21 C 0.073 3.927 22 N -0.583 5.583 23 C 0.083 3.917 24 C -0.054 4.054 25 C 0.055 3.945 26 C -0.398 4.398 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.043 0.957 37 H 0.381 0.619 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.073 0.927 41 H 0.377 0.623 42 H 0.173 0.827 43 H 0.423 0.577 44 H 0.137 0.863 45 H 0.042 0.958 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.128 1.066 1.333 4.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.552 4.552 2 Si 1.192 2.808 3 C -0.555 4.555 4 C -0.485 4.485 5 C -0.072 4.072 6 N -0.131 5.131 7 N -0.322 5.322 8 C 0.367 3.633 9 O -0.385 6.385 10 C -0.123 4.123 11 C -0.135 4.135 12 C -0.089 4.089 13 C -0.066 4.066 14 C -0.174 4.174 15 C -0.155 4.155 16 O -0.351 6.351 17 Si 0.763 3.237 18 H -0.173 1.173 19 H -0.172 1.172 20 H -0.176 1.176 21 C -0.056 4.056 22 N -0.185 5.185 23 C -0.024 4.024 24 C -0.075 4.075 25 C -0.072 4.072 26 C -0.485 4.485 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.220 0.780 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.091 0.909 41 H 0.224 0.776 42 H 0.190 0.810 43 H 0.261 0.739 44 H 0.155 0.845 45 H 0.061 0.939 46 H 0.098 0.902 47 H 0.107 0.893 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.639 -0.569 1.328 3.008 hybrid contribution 1.202 0.929 0.000 1.519 sum 3.841 0.359 1.328 4.080 Atomic orbital electron populations 1.26027 1.20178 1.04694 1.04347 0.79607 0.67502 0.66337 0.67371 1.26129 1.06063 1.18759 1.04561 1.26245 0.99168 1.08875 1.14192 1.22230 0.97935 0.95627 0.91361 1.61467 1.22627 1.26393 1.02575 1.45105 1.04344 1.05319 1.77418 1.17972 0.88752 0.80522 0.76088 1.90780 1.28672 1.71614 1.47388 1.19349 0.92654 0.92791 1.07470 1.20672 0.91274 0.99428 1.02113 1.20160 0.98593 0.91280 0.98874 1.19136 0.91388 0.93270 1.02849 1.19529 0.92893 0.91356 1.13631 1.23960 0.93214 1.09072 0.89234 1.86559 1.27083 1.89500 1.31988 0.85867 0.80098 0.76872 0.80861 1.17256 1.17247 1.17625 1.21709 0.82640 0.99354 1.01891 1.41672 1.07118 1.05858 1.63878 1.18049 0.95075 0.83546 1.05681 1.20043 0.96463 0.91781 0.99248 1.22254 0.97845 0.95656 0.91463 1.26246 0.99228 1.08868 1.14155 0.91250 0.91252 0.90946 0.91557 0.91125 0.91129 0.89314 0.89910 0.90155 0.93860 0.77980 0.85812 0.85228 0.90943 0.77612 0.80977 0.73939 0.84481 0.93938 0.90235 0.89292 0.89951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.28 8.65 101.05 0.87 1.16 16 2 Si 1.00 -1.74 11.76 -169.99 -2.00 -3.74 16 3 C -0.45 0.67 8.65 101.05 0.87 1.55 16 4 C -0.40 0.15 5.24 37.64 0.20 0.34 16 5 C 0.06 0.01 5.61 -3.59 -0.02 -0.01 16 6 N -0.31 -0.57 4.00 -113.40 -0.45 -1.02 16 7 N -0.58 -0.87 4.58 30.47 0.14 -0.73 16 8 C 0.58 2.34 7.87 -12.45 -0.10 2.24 16 9 O -0.51 -4.04 16.64 5.28 0.09 -3.95 16 10 C -0.12 -0.29 5.87 -104.95 -0.62 -0.91 16 11 C -0.12 -0.06 9.46 -39.57 -0.37 -0.44 16 12 C -0.07 -0.08 10.03 -39.69 -0.40 -0.48 16 13 C -0.06 -0.15 6.35 -105.05 -0.67 -0.82 16 14 C -0.17 -0.23 5.61 -102.74 -0.58 -0.81 16 15 C -0.04 0.03 3.05 36.01 0.11 0.14 16 16 O -0.55 -0.06 12.86 -35.23 -0.45 -0.51 16 17 Si 0.94 -1.42 26.08 -169.99 -4.43 -5.85 16 18 H -0.25 0.20 7.11 56.52 0.40 0.60 16 19 H -0.25 0.16 7.03 56.52 0.40 0.56 16 20 H -0.25 0.30 7.11 56.52 0.40 0.70 16 21 C 0.07 0.00 10.43 -16.78 -0.17 -0.18 16 22 N -0.58 0.05 6.07 -10.68 -0.06 -0.02 16 23 C 0.08 0.18 7.26 -84.00 -0.61 -0.43 16 24 C -0.05 -0.14 9.61 -39.03 -0.37 -0.52 16 25 C 0.05 0.03 5.61 -3.59 -0.02 0.01 16 26 C -0.40 0.05 5.24 37.64 0.20 0.25 16 27 H 0.07 -0.06 7.96 -51.93 -0.41 -0.47 16 28 H 0.07 -0.05 7.96 -51.93 -0.41 -0.47 16 29 H 0.07 0.00 7.96 -51.93 -0.41 -0.42 16 30 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 31 H 0.07 -0.10 7.96 -51.93 -0.41 -0.51 16 32 H 0.07 -0.10 7.96 -51.93 -0.41 -0.52 16 33 H 0.09 0.10 7.99 -51.93 -0.42 -0.32 16 34 H 0.08 -0.12 8.00 -51.93 -0.42 -0.54 16 35 H 0.08 0.06 8.04 -51.93 -0.42 -0.36 16 36 H 0.04 -0.06 7.58 -51.93 -0.39 -0.46 16 37 H 0.38 -0.52 6.82 -185.16 -1.26 -1.78 16 38 H 0.12 -0.28 6.36 -52.48 -0.33 -0.62 16 39 H 0.13 -0.07 8.06 -52.48 -0.42 -0.49 16 40 H 0.07 -0.15 7.96 -51.93 -0.41 -0.56 16 41 H 0.38 -1.65 8.74 45.56 0.40 -1.25 16 42 H 0.17 -0.47 6.29 -52.49 -0.33 -0.80 16 43 H 0.42 -1.26 8.96 -40.82 -0.37 -1.63 16 44 H 0.14 0.34 7.62 -52.49 -0.40 -0.06 16 45 H 0.04 -0.05 7.58 -51.93 -0.39 -0.44 16 46 H 0.08 0.11 8.04 -51.93 -0.42 -0.31 16 47 H 0.09 0.13 7.99 -51.93 -0.42 -0.29 16 48 H 0.08 -0.10 7.99 -51.93 -0.42 -0.51 16 LS Contribution 389.56 15.07 5.87 5.87 Total: 0.00 -9.63 389.56 -10.68 -20.30 By element: Atomic # 1 Polarization: -3.75 SS G_CDS: -7.69 Total: -11.44 kcal Atomic # 6 Polarization: 2.77 SS G_CDS: -1.68 Total: 1.10 kcal Atomic # 7 Polarization: -1.39 SS G_CDS: -0.38 Total: -1.77 kcal Atomic # 8 Polarization: -4.10 SS G_CDS: -0.37 Total: -4.47 kcal Atomic # 14 Polarization: -3.16 SS G_CDS: -6.43 Total: -9.59 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -9.63 -10.68 -20.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_12335838.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.307 kcal (2) G-P(sol) polarization free energy of solvation -9.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds