Wall clock time and date at job start Thu Mar 4 2021 12:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38505 * 119.84983 * 2 1 4 4 C 1.38100 * 120.39084 * 179.97438 * 3 2 1 5 5 C 1.50696 * 119.95957 * 179.97438 * 4 3 2 6 6 O 1.42904 * 109.46938 * 105.00473 * 5 4 3 7 7 Si 1.86299 * 109.47245 * 345.00330 * 5 4 3 8 8 H 1.48501 * 109.46919 * 59.99643 * 7 5 4 9 9 H 1.48495 * 109.47001 * 179.97438 * 7 5 4 10 10 H 1.48497 * 109.47115 * 300.00004 * 7 5 4 11 11 C 1.38669 * 120.08192 * 0.02562 * 4 3 2 12 12 O 1.35656 * 120.14828 * 180.02562 * 11 4 3 13 13 C 1.40171 * 119.70179 * 359.97153 * 11 4 3 14 14 C 1.47535 * 120.19285 * 180.02562 * 13 11 4 15 15 O 1.21590 * 119.99991 * 0.02562 * 14 13 11 16 16 N 1.34784 * 120.00151 * 180.02562 * 14 13 11 17 17 N 1.36597 * 119.99795 * 179.97438 * 16 14 13 18 18 C 1.46442 * 111.00069 * 247.40524 * 17 16 14 19 19 C 1.53919 * 109.46475 * 155.03485 * 18 17 16 20 20 Si 1.87573 * 106.83938 * 58.00660 * 19 18 17 21 21 C 1.86303 * 110.03334 * 196.90342 * 20 19 18 22 22 C 1.86299 * 110.11458 * 75.47004 * 20 19 18 23 23 C 1.87577 * 106.56391 * 316.16137 * 20 19 18 24 24 C 1.46440 * 111.00091 * 120.00292 * 17 16 14 25 25 C 1.37830 * 119.85038 * 179.97438 * 2 1 3 26 26 H 1.09001 * 109.47221 * 89.99868 * 1 2 3 27 27 H 1.08996 * 109.47373 * 210.00446 * 1 2 3 28 28 H 1.09007 * 109.46782 * 329.99920 * 1 2 3 29 29 H 1.07997 * 119.80522 * 359.72809 * 3 2 1 30 30 H 1.08997 * 109.47267 * 225.00102 * 5 4 3 31 31 H 0.96704 * 113.99905 * 299.99834 * 6 5 4 32 32 H 0.96703 * 113.99656 * 269.94996 * 12 11 4 33 33 H 0.96998 * 119.99722 * 0.02562 * 16 14 13 34 34 H 1.09007 * 109.47173 * 275.03418 * 18 17 16 35 35 H 1.09000 * 109.47147 * 35.03447 * 18 17 16 36 36 H 1.09005 * 109.97936 * 298.67915 * 19 18 17 37 37 H 1.09003 * 110.06267 * 177.38204 * 19 18 17 38 38 H 1.08998 * 109.46968 * 177.12630 * 21 20 19 39 39 H 1.09006 * 109.46621 * 297.12448 * 21 20 19 40 40 H 1.08996 * 109.46928 * 57.12165 * 21 20 19 41 41 H 1.09002 * 109.47235 * 302.82777 * 22 20 19 42 42 H 1.09000 * 109.47063 * 62.82610 * 22 20 19 43 43 H 1.09001 * 109.46936 * 182.82324 * 22 20 19 44 44 H 1.08990 * 109.98006 * 284.50884 * 23 20 19 45 45 H 1.09006 * 110.05470 * 163.20810 * 23 20 19 46 46 H 1.09001 * 109.47437 * 324.96244 * 24 17 16 47 47 H 1.09003 * 109.47405 * 84.96412 * 24 17 16 48 48 H 1.07996 * 120.04160 * 359.97232 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1964 1.2013 0.0000 4 6 3.5773 1.2143 0.0005 5 6 4.3175 2.5270 -0.0001 6 8 4.8548 2.7714 1.3014 7 14 3.1449 3.9010 -0.4559 8 1 2.0390 3.9566 0.5336 9 1 3.8742 5.1945 -0.4559 10 1 2.5866 3.6470 -1.8083 11 6 4.2837 0.0210 0.0005 12 8 5.6402 0.0323 0.0016 13 6 3.5897 -1.1968 0.0006 14 6 4.3303 -2.4728 0.0012 15 8 5.5462 -2.4700 0.0021 16 7 3.6591 -3.6417 0.0007 17 7 4.3449 -4.8230 0.0007 18 6 4.1545 -5.5404 -1.2617 19 6 5.3502 -6.4790 -1.5036 20 14 5.4399 -7.6356 -0.0296 21 6 7.1116 -8.4551 0.0378 22 6 4.1013 -8.9262 -0.1456 23 6 5.1813 -6.5771 1.4972 24 6 4.0167 -5.6203 1.1844 25 6 2.1930 -1.1954 0.0005 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3633 0.8900 0.5139 29 1 1.6508 2.1333 -0.0044 30 1 5.1292 2.4861 -0.7264 31 1 4.1875 2.8204 1.9996 32 1 6.0341 0.0352 -0.8816 33 1 2.6891 -3.6439 -0.0004 34 1 3.2367 -6.1264 -1.2118 35 1 4.0839 -4.8236 -2.0798 36 1 6.2700 -5.8989 -1.5782 37 1 5.1966 -7.0522 -2.4179 38 1 7.1718 -9.0853 0.9251 39 1 7.2523 -9.0673 -0.8530 40 1 7.8888 -7.6920 0.0807 41 1 3.1294 -8.4369 -0.2092 42 1 4.2603 -9.5356 -1.0352 43 1 4.1313 -9.5612 0.7399 44 1 6.0847 -6.0064 1.7121 45 1 4.9271 -7.2068 2.3499 46 1 3.8522 -4.9581 2.0344 47 1 3.1125 -6.1985 0.9938 48 1 1.6513 -2.1297 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_13422088.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:55:19 Heat of formation + Delta-G solvation = -81.439742 kcal Electronic energy + Delta-G solvation = -27930.923789 eV Core-core repulsion = 24110.885042 eV Total energy + Delta-G solvation = -3820.038748 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.81515 -40.51181 -38.56279 -37.99590 -37.56920 -34.40858 -33.05767 -32.64409 -32.15872 -29.38476 -28.37185 -28.31299 -27.52100 -26.77712 -24.88081 -23.94956 -22.30541 -21.85295 -21.53124 -19.73565 -18.80767 -18.39860 -17.70390 -17.11954 -16.90150 -16.61262 -16.13265 -15.90394 -15.73707 -15.38685 -15.21767 -14.96441 -14.57497 -14.40432 -14.23349 -13.97988 -13.85471 -13.68543 -13.60449 -13.56884 -13.34060 -13.20535 -13.06860 -13.01874 -12.91740 -12.81931 -12.56648 -12.30683 -12.24643 -12.14832 -11.80341 -11.66105 -11.01475 -10.78446 -10.48553 -10.42195 -10.36392 -10.23754 -10.11834 -9.66726 -9.52565 -0.37472 0.05598 1.12291 1.42435 1.51903 1.55076 1.73180 1.79063 1.90941 1.94435 2.06880 2.55647 2.66106 3.15719 3.23205 3.40192 3.52273 3.64632 3.76683 4.07723 4.12800 4.16795 4.26313 4.30201 4.34042 4.41145 4.50206 4.61293 4.64991 4.65728 4.78105 4.80620 4.81292 4.83548 4.85780 4.85899 4.88800 4.94570 4.99221 5.14579 5.20361 5.38028 5.42469 5.43459 5.58110 5.64353 5.65658 5.92377 6.20675 6.38083 6.69380 6.74448 7.49034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.094 4.094 3 C -0.087 4.087 4 C -0.156 4.156 5 C -0.082 4.082 6 O -0.552 6.552 7 Si 0.991 3.009 8 H -0.237 1.237 9 H -0.277 1.277 10 H -0.249 1.249 11 C 0.170 3.830 12 O -0.489 6.489 13 C -0.175 4.175 14 C 0.570 3.430 15 O -0.541 6.541 16 N -0.567 5.567 17 N -0.338 5.338 18 C 0.054 3.946 19 C -0.413 4.413 20 Si 1.064 2.936 21 C -0.463 4.463 22 C -0.449 4.449 23 C -0.414 4.414 24 C 0.054 3.946 25 C -0.061 4.061 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.150 0.850 30 H 0.113 0.887 31 H 0.386 0.614 32 H 0.402 0.598 33 H 0.394 0.606 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.095 0.905 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.477 -2.043 -2.027 9.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.094 4.094 3 C -0.105 4.105 4 C -0.157 4.157 5 C -0.191 4.191 6 O -0.358 6.358 7 Si 0.813 3.187 8 H -0.161 1.161 9 H -0.202 1.202 10 H -0.173 1.173 11 C 0.123 3.877 12 O -0.301 6.301 13 C -0.180 4.180 14 C 0.359 3.641 15 O -0.417 6.417 16 N -0.313 5.313 17 N -0.157 5.157 18 C -0.072 4.072 19 C -0.498 4.498 20 Si 1.255 2.745 21 C -0.569 4.569 22 C -0.557 4.557 23 C -0.499 4.499 24 C -0.073 4.073 25 C -0.080 4.080 26 H 0.104 0.896 27 H 0.102 0.898 28 H 0.097 0.903 29 H 0.167 0.833 30 H 0.131 0.869 31 H 0.235 0.765 32 H 0.262 0.738 33 H 0.236 0.764 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.114 0.886 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.114 0.886 46 H 0.086 0.914 47 H 0.087 0.913 48 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -8.210 -1.269 -1.946 8.532 hybrid contribution -0.621 -0.508 -0.078 0.806 sum -8.831 -1.777 -2.024 9.232 Atomic orbital electron populations 1.20923 0.88068 1.04514 1.03901 1.20095 0.98072 0.91746 0.99495 1.21402 0.92442 0.99700 0.96968 1.20747 0.94495 0.95511 1.04936 1.25133 1.05679 0.99082 0.89243 1.86557 1.38208 1.94218 1.16867 0.85141 0.76867 0.75620 0.81081 1.16078 1.20210 1.17273 1.18475 0.83622 0.90561 0.95059 1.84771 1.15200 1.96016 1.34128 1.20340 0.94973 0.92114 1.10552 1.18225 0.86974 0.82947 0.75999 1.90792 1.14901 1.87336 1.48655 1.44954 1.07981 1.01500 1.76823 1.61416 1.52205 0.98208 1.03864 1.22284 0.98766 0.96575 0.89602 1.26456 0.99505 1.08087 1.15780 0.78618 0.66335 0.64820 0.64728 1.26252 1.18342 1.07646 1.04682 1.26116 1.12509 1.12017 1.05032 1.26485 1.00210 1.06820 1.16421 1.22279 0.98355 0.95533 0.91125 1.21392 0.90945 0.99753 0.95903 0.89591 0.89803 0.90296 0.83303 0.86913 0.76536 0.73843 0.76382 0.91466 0.91489 0.91606 0.88611 0.90967 0.90902 0.92140 0.90839 0.90738 0.90753 0.91686 0.88620 0.91445 0.91289 0.82543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.07 10.00 71.24 0.71 1.78 16 2 C -0.09 0.36 5.87 -19.90 -0.12 0.24 16 3 C -0.09 0.18 8.30 22.30 0.19 0.37 16 4 C -0.16 -0.32 5.27 -19.80 -0.10 -0.42 16 5 C -0.08 -0.09 2.38 71.23 0.17 0.08 16 6 O -0.55 -2.49 12.88 -148.98 -1.92 -4.41 16 7 Si 0.99 -2.37 25.48 68.60 1.75 -0.62 16 8 H -0.24 1.11 6.73 99.48 0.67 1.78 16 9 H -0.28 -0.54 7.11 99.48 0.71 0.17 16 10 H -0.25 0.58 7.11 99.48 0.71 1.28 16 11 C 0.17 1.15 6.69 22.84 0.15 1.30 16 12 O -0.49 -5.16 10.91 -68.80 -0.75 -5.91 16 13 C -0.17 -0.84 5.89 -20.01 -0.12 -0.96 16 14 C 0.57 5.32 7.87 86.69 0.68 6.00 16 15 O -0.54 -10.12 15.49 16.91 0.26 -9.86 16 16 N -0.57 -1.57 4.58 -175.80 -0.81 -2.38 16 17 N -0.34 -1.29 4.00 -512.68 -2.05 -3.35 16 18 C 0.05 0.01 5.61 86.70 0.49 0.49 16 19 C -0.41 0.18 5.24 72.29 0.38 0.56 16 20 Si 1.06 -4.25 11.76 68.60 0.81 -3.44 16 21 C -0.46 0.37 8.65 113.37 0.98 1.35 16 22 C -0.45 2.42 8.65 113.37 0.98 3.40 16 23 C -0.41 0.06 5.24 72.30 0.38 0.44 16 24 C 0.05 0.02 5.61 86.70 0.49 0.50 16 25 C -0.06 0.15 9.18 22.52 0.21 0.36 16 26 H 0.09 -0.90 8.14 -2.39 -0.02 -0.91 16 27 H 0.08 -0.93 8.08 -2.39 -0.02 -0.95 16 28 H 0.08 -0.79 8.08 -2.38 -0.02 -0.80 16 29 H 0.15 -0.90 4.86 -2.91 -0.01 -0.92 16 30 H 0.11 0.07 7.83 -2.39 -0.02 0.06 16 31 H 0.39 -1.04 8.70 -74.05 -0.64 -1.69 16 32 H 0.40 1.56 9.06 -74.06 -0.67 0.88 16 33 H 0.39 -1.78 6.86 -215.50 -1.48 -3.26 16 34 H 0.07 -0.34 7.58 -2.38 -0.02 -0.36 16 35 H 0.07 0.14 8.04 -2.39 -0.02 0.12 16 36 H 0.06 0.29 7.99 -2.38 -0.02 0.27 16 37 H 0.10 -0.33 7.99 -2.39 -0.02 -0.35 16 38 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 39 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 40 H 0.06 0.10 7.96 -2.39 -0.02 0.08 16 41 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 42 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 43 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 44 H 0.06 0.31 7.99 -2.39 -0.02 0.29 16 45 H 0.10 -0.30 8.00 -2.38 -0.02 -0.32 16 46 H 0.07 0.17 8.04 -2.39 -0.02 0.15 16 47 H 0.07 -0.35 7.58 -2.39 -0.02 -0.37 16 48 H 0.16 -1.41 6.40 -2.91 -0.02 -1.43 16 Total: 0.00 -23.99 385.49 1.67 -22.32 By element: Atomic # 1 Polarization: -6.76 SS G_CDS: -1.08 Total: -7.85 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 5.46 Total: 15.49 kcal Atomic # 7 Polarization: -2.87 SS G_CDS: -2.86 Total: -5.73 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -2.41 Total: -20.18 kcal Atomic # 14 Polarization: -6.61 SS G_CDS: 2.56 Total: -4.06 kcal Total: -23.99 1.67 -22.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_13422088.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.122 kcal (2) G-P(sol) polarization free energy of solvation -23.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds