Wall clock time and date at job start Thu Mar 4 2021 13:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86296 * 1 3 3 C 1.86303 * 110.01369 * 2 1 4 4 C 1.87570 * 110.03069 * 121.38642 * 2 1 3 5 5 C 1.53931 * 106.83836 * 163.10088 * 4 2 1 6 6 N 1.46444 * 109.45807 * 301.99523 * 5 4 2 7 7 N 1.36605 * 110.99752 * 204.97280 * 6 5 4 8 8 C 1.34768 * 120.00338 * 119.99625 * 7 6 5 9 9 O 1.21657 * 120.00293 * 0.02562 * 8 7 6 10 10 C 1.47043 * 120.00085 * 179.97438 * 8 7 6 11 11 C 1.36227 * 123.49476 * 179.97438 * 10 8 7 12 12 Cl 1.73601 * 124.60397 * 0.03570 * 11 10 8 13 13 S 1.70444 * 110.79087 * 180.02562 * 11 10 8 14 14 C 1.75498 * 92.46699 * 359.97438 * 13 11 10 15 15 C 1.50697 * 124.68626 * 180.02562 * 14 13 11 16 16 O 1.42895 * 109.47590 * 120.02383 * 15 14 13 17 17 Si 1.86300 * 109.47007 * 0.02562 * 15 14 13 18 18 H 1.48503 * 109.46942 * 60.00611 * 17 15 14 19 19 H 1.48503 * 109.47276 * 180.02562 * 17 15 14 20 20 H 1.48494 * 109.47372 * 300.00074 * 17 15 14 21 21 C 1.32692 * 110.62947 * 0.26609 * 14 13 11 22 22 C 1.46438 * 113.64616 * 79.02137 * 6 5 4 23 23 C 1.53933 * 109.45690 * 280.98018 * 22 6 5 24 24 H 1.09007 * 109.46994 * 298.61845 * 1 2 3 25 25 H 1.09005 * 109.46765 * 58.61067 * 1 2 3 26 26 H 1.08997 * 109.47267 * 178.61039 * 1 2 3 27 27 H 1.09004 * 109.47091 * 181.38286 * 3 2 1 28 28 H 1.08996 * 109.47078 * 301.38702 * 3 2 1 29 29 H 1.08994 * 109.46753 * 61.38757 * 3 2 1 30 30 H 1.08998 * 109.97687 * 43.77125 * 4 2 1 31 31 H 1.09000 * 110.05553 * 282.47302 * 4 2 1 32 32 H 1.09001 * 109.47267 * 181.99565 * 5 4 2 33 33 H 1.08997 * 109.47514 * 61.98727 * 5 4 2 34 34 H 0.97006 * 119.99585 * 299.99174 * 7 6 5 35 35 H 1.09001 * 109.46613 * 240.02521 * 15 14 13 36 36 H 0.96705 * 114.00010 * 300.00061 * 16 15 14 37 37 H 1.07994 * 123.45274 * 179.73764 * 21 14 13 38 38 H 1.08997 * 109.47191 * 40.96786 * 22 6 5 39 39 H 1.08987 * 109.47561 * 160.98277 * 22 6 5 40 40 H 1.09000 * 109.97736 * 298.67230 * 23 22 6 41 41 H 1.08995 * 110.05376 * 177.38009 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5006 1.7505 0.0000 4 6 2.5054 -0.9178 1.5044 5 6 3.9826 -1.2501 1.2268 6 7 4.0816 -2.0464 0.0017 7 7 5.2165 -2.8066 0.0025 8 6 5.1283 -4.1494 -0.0717 9 8 4.0379 -4.6846 -0.1397 10 6 6.3501 -4.9676 -0.0714 11 6 6.3439 -6.3280 -0.1431 12 17 4.9114 -7.3033 -0.2458 13 16 7.9335 -6.9424 -0.1184 14 6 8.6335 -5.3367 -0.0099 15 6 10.1110 -5.0480 0.0572 16 8 10.4886 -4.2352 -1.0558 17 14 11.0598 -6.6505 0.0061 18 1 10.7525 -7.3675 -1.2575 19 1 12.5158 -6.3660 0.0728 20 1 10.6675 -7.4952 1.1626 21 6 7.6818 -4.4122 0.0101 22 6 3.9826 -1.2523 -1.2246 23 6 2.5054 -0.9205 -1.5028 24 1 -0.3633 0.4923 0.9022 25 1 -0.3633 0.5353 -0.8773 26 1 -0.3633 -1.0273 -0.0249 27 1 3.5903 1.7403 -0.0248 28 1 2.1220 2.2751 -0.8773 29 1 2.1625 2.2603 0.9021 30 1 1.9380 -1.8369 1.6503 31 1 2.4257 -0.2867 2.3895 32 1 4.3908 -1.8176 2.0631 33 1 4.5465 -0.3253 1.1054 34 1 6.0860 -2.3799 0.0563 35 1 10.3365 -4.5216 0.9846 36 1 10.3161 -4.6417 -1.9161 37 1 7.8819 -3.3532 0.0776 38 1 4.5464 -0.3272 -1.1050 39 1 4.3907 -1.8213 -2.0598 40 1 1.9380 -1.8399 -1.6471 41 1 2.4243 -0.2903 -2.3884 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_13431040.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:00:37 Heat of formation + Delta-G solvation = -33.482902 kcal Electronic energy + Delta-G solvation = -24077.036517 eV Core-core repulsion = 20462.649599 eV Total energy + Delta-G solvation = -3614.386918 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 348.064 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.29719 -39.36381 -38.45442 -37.91014 -36.93151 -34.10262 -32.13272 -31.68175 -29.49399 -28.56551 -28.33690 -26.86563 -25.31272 -23.92411 -22.25053 -22.07270 -20.81952 -19.45741 -18.81802 -17.94379 -17.38001 -16.77499 -16.40345 -16.25825 -15.99043 -15.60942 -15.50968 -14.88730 -14.67295 -14.40372 -14.23122 -14.15424 -13.96915 -13.78631 -13.58993 -13.53725 -13.19244 -13.05643 -12.99230 -12.96032 -12.78641 -12.62043 -12.43482 -12.28068 -12.25493 -12.12369 -11.78099 -10.98891 -10.77110 -10.57828 -10.45576 -10.38742 -10.20991 -9.91782 -9.73178 -9.64510 -0.67207 -0.26433 0.41292 0.71147 0.98546 1.08476 1.40647 1.47068 1.65944 1.81088 1.90707 1.95982 2.08190 2.19284 2.67783 3.21328 3.37068 3.60320 3.78750 3.84648 4.19975 4.28473 4.29409 4.33553 4.44726 4.57937 4.68016 4.68508 4.76805 4.81664 4.82182 4.85569 4.87143 4.90617 4.94256 5.01690 5.44443 5.45649 5.59026 5.66897 5.94577 6.21090 6.37298 6.63764 7.49203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.063 2.937 3 C -0.449 4.449 4 C -0.412 4.412 5 C 0.054 3.946 6 N -0.336 5.336 7 N -0.561 5.561 8 C 0.586 3.414 9 O -0.538 6.538 10 C -0.160 4.160 11 C -0.133 4.133 12 Cl 0.004 6.996 13 S 0.235 5.765 14 C -0.223 4.223 15 C -0.026 4.026 16 O -0.540 6.540 17 Si 0.897 3.103 18 H -0.235 1.235 19 H -0.235 1.235 20 H -0.238 1.238 21 C -0.064 4.064 22 C 0.055 3.945 23 C -0.413 4.413 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.397 0.603 35 H 0.150 0.850 36 H 0.392 0.608 37 H 0.185 0.815 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.967 4.398 0.306 7.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.254 2.746 3 C -0.558 4.558 4 C -0.497 4.497 5 C -0.072 4.072 6 N -0.155 5.155 7 N -0.307 5.307 8 C 0.371 3.629 9 O -0.414 6.414 10 C -0.181 4.181 11 C -0.280 4.280 12 Cl 0.033 6.967 13 S 0.501 5.499 14 C -0.341 4.341 15 C -0.140 4.140 16 O -0.347 6.347 17 Si 0.718 3.282 18 H -0.158 1.158 19 H -0.157 1.157 20 H -0.161 1.161 21 C -0.093 4.093 22 C -0.072 4.072 23 C -0.498 4.498 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.092 0.908 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.238 0.762 35 H 0.167 0.833 36 H 0.242 0.758 37 H 0.202 0.798 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.955 1.761 0.629 6.241 hybrid contribution -0.654 1.580 -0.368 1.749 sum 5.300 3.341 0.261 6.271 Atomic orbital electron populations 1.26257 1.22034 1.04028 1.04611 0.78627 0.65484 0.65600 0.64879 1.26128 1.06555 1.18160 1.04912 1.26446 0.98922 1.08382 1.15981 1.22279 0.98411 0.96248 0.90302 1.61411 1.23226 1.27261 1.03628 1.44828 1.05189 1.04447 1.76191 1.17532 0.87786 0.81281 0.76260 1.90842 1.29508 1.72284 1.48718 1.20268 0.94997 0.91386 1.11429 1.25607 0.96938 0.96025 1.09437 1.98430 1.34640 1.67763 1.95910 1.83415 0.90386 1.07459 1.68644 1.25004 1.01833 0.95294 1.11962 1.24331 0.88593 1.06317 0.94710 1.86530 1.85209 1.46039 1.16921 0.86197 0.82703 0.75990 0.83318 1.15767 1.15721 1.16107 1.21140 0.87107 1.02047 0.98993 1.22273 0.98307 0.96214 0.90411 1.26465 0.98968 1.08346 1.16070 0.90960 0.91016 0.92115 0.90843 0.90857 0.90762 0.91501 0.88591 0.91093 0.91396 0.76198 0.83287 0.75803 0.79836 0.91505 0.91577 0.91613 0.88790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.44 8.65 113.37 0.98 1.42 16 2 Si 1.06 -4.46 11.76 68.60 0.81 -3.65 16 3 C -0.45 2.39 8.65 113.37 0.98 3.37 16 4 C -0.41 0.41 5.24 72.30 0.38 0.78 16 5 C 0.05 -0.03 5.61 86.70 0.49 0.45 16 6 N -0.34 -1.04 4.00 -512.68 -2.05 -3.09 16 7 N -0.56 -1.12 4.61 -176.15 -0.81 -1.93 16 8 C 0.59 4.78 7.89 86.55 0.68 5.47 16 9 O -0.54 -9.13 15.23 -4.21 -0.06 -9.19 16 10 C -0.16 -0.58 5.98 -19.84 -0.12 -0.70 16 11 C -0.13 -0.70 6.87 67.35 0.46 -0.24 16 12 Cl 0.00 0.03 27.20 -2.72 -0.07 -0.04 16 13 S 0.24 -0.15 20.17 -56.49 -1.14 -1.29 16 14 C -0.22 0.96 5.68 24.51 0.14 1.10 16 15 C -0.03 0.19 2.94 71.23 0.21 0.40 16 16 O -0.54 3.51 12.85 -148.98 -1.91 1.60 16 17 Si 0.90 -4.76 26.19 68.60 1.80 -2.96 16 18 H -0.23 1.09 7.11 99.48 0.71 1.79 16 19 H -0.23 0.67 7.11 99.48 0.71 1.38 16 20 H -0.24 0.90 7.11 99.48 0.71 1.61 16 21 C -0.06 0.23 9.71 22.70 0.22 0.45 16 22 C 0.05 0.00 5.61 86.71 0.49 0.49 16 23 C -0.41 0.16 5.24 72.30 0.38 0.54 16 24 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 25 H 0.07 -0.11 7.96 -2.38 -0.02 -0.13 16 26 H 0.06 0.09 7.96 -2.39 -0.02 0.07 16 27 H 0.07 -0.46 7.96 -2.38 -0.02 -0.47 16 28 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 29 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 30 H 0.07 0.24 7.99 -2.39 -0.02 0.22 16 31 H 0.10 -0.37 8.00 -2.39 -0.02 -0.39 16 32 H 0.07 0.07 8.04 -2.39 -0.02 0.05 16 33 H 0.07 -0.38 7.58 -2.39 -0.02 -0.40 16 34 H 0.40 -2.00 7.37 -215.49 -1.59 -3.59 16 35 H 0.15 -1.57 7.96 -2.39 -0.02 -1.59 16 36 H 0.39 -4.73 8.70 -74.05 -0.64 -5.38 16 37 H 0.18 -1.71 7.10 -2.91 -0.02 -1.73 16 38 H 0.07 -0.33 7.58 -2.39 -0.02 -0.35 16 39 H 0.07 0.16 8.04 -2.39 -0.02 0.14 16 40 H 0.06 0.29 7.99 -2.39 -0.02 0.27 16 41 H 0.09 -0.29 7.99 -2.39 -0.02 -0.31 16 Total: 0.00 -18.19 363.53 1.42 -16.77 By element: Atomic # 1 Polarization: -9.33 SS G_CDS: -0.42 Total: -9.75 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 5.29 Total: 13.53 kcal Atomic # 7 Polarization: -2.15 SS G_CDS: -2.86 Total: -5.02 kcal Atomic # 8 Polarization: -5.61 SS G_CDS: -1.98 Total: -7.59 kcal Atomic # 14 Polarization: -9.22 SS G_CDS: 2.60 Total: -6.62 kcal Atomic # 16 Polarization: -0.15 SS G_CDS: -1.14 Total: -1.29 kcal Atomic # 17 Polarization: 0.03 SS G_CDS: -0.07 Total: -0.04 kcal Total: -18.19 1.42 -16.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_13431040.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.714 kcal (2) G-P(sol) polarization free energy of solvation -18.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds