Wall clock time and date at job start Thu Mar 4 2021 13:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86301 * 1 3 3 C 1.86300 * 110.00938 * 2 1 4 4 C 1.87573 * 110.03119 * 238.61413 * 2 1 3 5 5 C 1.54016 * 106.79812 * 197.00987 * 4 2 1 6 6 N 1.46444 * 109.55937 * 57.85278 * 5 4 2 7 7 N 1.36607 * 110.99465 * 155.08536 * 6 5 4 8 8 C 1.34771 * 119.99997 * 251.89094 * 7 6 5 9 9 O 1.21280 * 120.00434 * 5.01337 * 8 7 6 10 10 C 1.50706 * 120.00143 * 185.00982 * 8 7 6 11 11 C 1.53543 * 109.81764 * 80.86637 * 10 8 7 12 12 C 1.53040 * 108.55513 * 180.48971 * 11 10 8 13 13 C 1.50199 * 110.31984 * 310.42744 * 12 11 10 14 14 C 1.50707 * 118.54562 * 200.07789 * 13 12 11 15 15 O 1.42894 * 109.47142 * 69.99997 * 14 13 12 16 16 Si 1.86299 * 109.47015 * 190.00195 * 14 13 12 17 17 H 1.48496 * 109.47136 * 179.97438 * 16 14 13 18 18 H 1.48501 * 109.47073 * 299.99832 * 16 14 13 19 19 H 1.48502 * 109.47567 * 59.99660 * 16 14 13 20 20 C 1.31109 * 122.90809 * 20.05709 * 13 12 11 21 21 N 1.38964 * 121.86881 * 359.65765 * 20 13 12 22 22 C 1.46439 * 113.64558 * 281.03359 * 6 5 4 23 23 C 1.53931 * 109.45560 * 79.02196 * 22 6 5 24 24 H 1.09002 * 109.47317 * 60.00187 * 1 2 3 25 25 H 1.08995 * 109.47480 * 300.00375 * 1 2 3 26 26 H 1.09003 * 109.47411 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47359 * 59.99647 * 3 2 1 28 28 H 1.08998 * 109.46691 * 179.97438 * 3 2 1 29 29 H 1.09002 * 109.47288 * 299.99578 * 3 2 1 30 30 H 1.08993 * 109.97678 * 316.23126 * 4 2 1 31 31 H 1.09004 * 109.97520 * 77.56632 * 4 2 1 32 32 H 1.09000 * 109.37594 * 297.86055 * 5 4 2 33 33 H 1.08991 * 109.46730 * 177.90735 * 5 4 2 34 34 H 0.96995 * 119.99816 * 71.90355 * 7 6 5 35 35 H 1.08998 * 109.80816 * 320.00128 * 10 8 7 36 36 H 1.08999 * 109.61953 * 300.20747 * 11 10 8 37 37 H 1.08996 * 109.62354 * 60.58810 * 11 10 8 38 38 H 1.09000 * 109.33124 * 70.69404 * 12 11 10 39 39 H 1.09005 * 109.32578 * 190.33747 * 12 11 10 40 40 H 1.08999 * 109.46905 * 309.99370 * 14 13 12 41 41 H 0.96701 * 113.99381 * 179.97438 * 15 14 13 42 42 H 1.08003 * 119.08126 * 179.61651 * 20 13 12 43 43 H 0.97001 * 120.58291 * 193.28849 * 21 20 13 44 44 H 1.09000 * 109.47474 * 319.03148 * 22 6 5 45 45 H 1.09001 * 109.47361 * 199.01619 * 22 6 5 46 46 H 1.09000 * 109.97457 * 182.66288 * 23 22 6 47 47 H 1.08997 * 110.05389 * 61.37084 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5005 1.7505 0.0000 4 6 2.5055 -0.9178 -1.5044 5 6 3.9826 -1.2523 -1.2245 6 7 4.0816 -2.0463 0.0020 7 7 5.2166 -2.8065 0.0027 8 6 5.1337 -4.1415 -0.1623 9 8 4.0627 -4.6576 -0.4019 10 6 6.3719 -4.9931 -0.0491 11 6 6.6882 -5.2578 1.4299 12 6 7.9548 -6.1128 1.5116 13 6 7.8435 -7.2987 0.5965 14 6 8.7363 -8.4870 0.8457 15 8 8.3253 -9.1486 2.0438 16 14 8.6130 -9.6682 -0.5896 17 1 9.4932 -10.8388 -0.3443 18 1 7.2079 -10.1265 -0.7343 19 1 9.0401 -8.9807 -1.8347 20 6 7.0038 -7.3459 -0.4093 21 7 6.1441 -6.2929 -0.6974 22 6 3.9826 -1.2500 1.2269 23 6 2.5054 -0.9177 1.5044 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 2.1419 2.2678 0.8900 28 1 3.5904 1.7402 0.0005 29 1 2.1421 2.2678 -0.8900 30 1 1.9381 -1.8368 -1.6503 31 1 2.4258 -0.2853 -2.3886 32 1 4.5465 -0.3272 -1.1048 33 1 4.3908 -1.8213 -2.0597 34 1 6.0822 -2.3854 0.1221 35 1 7.2131 -4.4865 -0.5221 36 1 6.8520 -4.3109 1.9443 37 1 5.8556 -5.7870 1.8933 38 1 8.8157 -5.5113 1.2197 39 1 8.0892 -6.4617 2.5355 40 1 9.7677 -8.1506 0.9518 41 1 8.8569 -9.9251 2.2664 42 1 6.9799 -8.2279 -1.0322 43 1 5.4053 -6.4135 -1.3143 44 1 4.5464 -0.3250 1.1056 45 1 4.3907 -1.8174 2.0633 46 1 2.4257 -0.2852 2.3886 47 1 1.9369 -1.8360 1.6514 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_15413834.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:00:54 Heat of formation + Delta-G solvation = -45.698142 kcal Electronic energy + Delta-G solvation = -24790.495147 eV Core-core repulsion = 21326.177214 eV Total energy + Delta-G solvation = -3464.317933 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.51227 -39.89265 -38.49267 -37.29251 -34.36142 -33.26475 -32.89703 -32.14361 -29.50342 -28.65126 -28.35307 -26.88876 -25.30828 -23.96308 -23.58865 -22.17864 -21.75764 -19.40241 -19.12006 -18.43063 -18.14608 -17.51183 -16.82269 -16.47118 -15.90825 -15.64958 -15.30655 -15.25636 -14.94965 -14.46364 -14.29024 -14.21319 -13.99693 -13.97725 -13.82347 -13.60536 -13.54387 -13.27275 -13.20608 -13.10859 -13.06691 -13.00576 -12.82124 -12.49449 -12.29466 -12.09376 -11.71645 -11.56089 -11.26877 -10.93065 -10.77278 -10.46886 -10.43151 -10.22591 -10.09222 -9.63429 -8.45032 1.25666 1.32163 1.43501 1.48305 1.49852 1.54286 1.80042 1.93781 1.94106 2.06211 2.54900 2.66421 3.21720 3.56174 3.70786 3.74255 4.00126 4.05681 4.18592 4.25586 4.27713 4.32424 4.37838 4.45556 4.59568 4.66290 4.66899 4.67835 4.79980 4.80564 4.81239 4.83916 4.85523 4.89082 5.00260 5.07518 5.23258 5.32107 5.42270 5.43927 5.57467 5.59524 5.65364 5.91333 6.18939 6.23564 6.40594 6.76798 6.96414 7.46511 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.063 2.937 3 C -0.450 4.450 4 C -0.415 4.415 5 C 0.054 3.946 6 N -0.339 5.339 7 N -0.564 5.564 8 C 0.528 3.472 9 O -0.555 6.555 10 C 0.145 3.855 11 C -0.120 4.120 12 C -0.052 4.052 13 C -0.247 4.247 14 C -0.055 4.055 15 O -0.568 6.568 16 Si 0.965 3.035 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.259 1.259 20 C 0.121 3.879 21 N -0.740 5.740 22 C 0.053 3.947 23 C -0.412 4.412 24 H 0.070 0.930 25 H 0.072 0.928 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.063 0.937 34 H 0.401 0.599 35 H 0.119 0.881 36 H 0.103 0.897 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.391 0.609 42 H 0.127 0.873 43 H 0.405 0.595 44 H 0.068 0.932 45 H 0.077 0.923 46 H 0.097 0.903 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 5.353 0.577 7.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.570 4.570 2 Si 1.254 2.746 3 C -0.558 4.558 4 C -0.500 4.500 5 C -0.072 4.072 6 N -0.158 5.158 7 N -0.309 5.309 8 C 0.314 3.686 9 O -0.430 6.430 10 C 0.035 3.965 11 C -0.159 4.159 12 C -0.089 4.089 13 C -0.257 4.257 14 C -0.167 4.167 15 O -0.376 6.376 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.205 1.205 19 H -0.183 1.183 20 C 0.000 4.000 21 N -0.373 5.373 22 C -0.073 4.073 23 C -0.497 4.497 24 H 0.089 0.911 25 H 0.091 0.909 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.242 0.758 35 H 0.136 0.864 36 H 0.121 0.879 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.103 0.897 41 H 0.240 0.760 42 H 0.144 0.856 43 H 0.241 0.759 44 H 0.086 0.914 45 H 0.095 0.905 46 H 0.115 0.885 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.847 4.683 -0.232 6.064 hybrid contribution 0.693 0.051 -0.013 0.695 sum 4.540 4.734 -0.244 6.564 Atomic orbital electron populations 1.26270 1.22138 1.04016 1.04596 0.78620 0.65419 0.65587 0.64949 1.26139 1.06553 1.18237 1.04889 1.26490 0.99125 1.08238 1.16106 1.22277 0.98166 0.96213 0.90591 1.61492 1.23371 1.27360 1.03573 1.44995 1.05641 1.05376 1.74890 1.20883 0.90526 0.81734 0.75448 1.90702 1.31601 1.73027 1.47696 1.21069 0.94438 0.84751 0.96253 1.21819 0.99005 1.02066 0.93002 1.19999 0.96812 0.93229 0.98872 1.20219 1.06311 0.99149 1.00021 1.24428 0.99723 0.96964 0.95579 1.86485 1.61139 1.46953 1.43051 0.85531 0.78965 0.78623 0.77650 1.18639 1.20472 1.18328 1.20459 0.91649 0.91140 0.96703 1.44315 1.33319 1.08769 1.50944 1.22286 0.98349 0.96389 0.90297 1.26416 0.99035 1.08373 1.15888 0.91112 0.90923 0.92120 0.90742 0.90841 0.90950 0.91732 0.88974 0.91640 0.91797 0.75779 0.86389 0.87883 0.93160 0.89447 0.90842 0.89676 0.75987 0.85566 0.75862 0.91365 0.90488 0.88465 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.62 8.65 113.37 0.98 1.60 16 2 Si 1.06 -5.10 11.76 68.60 0.81 -4.30 16 3 C -0.45 2.58 8.65 113.37 0.98 3.56 16 4 C -0.41 0.33 5.25 72.33 0.38 0.71 16 5 C 0.05 -0.04 5.61 86.73 0.49 0.45 16 6 N -0.34 -0.46 4.01 -512.52 -2.05 -2.52 16 7 N -0.56 0.50 4.63 -173.53 -0.80 -0.31 16 8 C 0.53 2.41 7.19 87.66 0.63 3.04 16 9 O -0.56 -8.14 16.41 -3.03 -0.05 -8.19 16 10 C 0.15 0.01 3.36 44.33 0.15 0.16 16 11 C -0.12 0.05 5.47 30.79 0.17 0.22 16 12 C -0.05 0.01 5.85 29.70 0.17 0.19 16 13 C -0.25 -0.70 5.40 -16.75 -0.09 -0.79 16 14 C -0.06 -0.01 2.80 71.24 0.20 0.19 16 15 O -0.57 -1.16 12.86 -148.98 -1.92 -3.08 16 16 Si 0.97 0.45 25.20 68.60 1.73 2.18 16 17 H -0.26 -0.15 7.11 99.48 0.71 0.56 16 18 H -0.28 -1.33 6.88 99.48 0.68 -0.65 16 19 H -0.26 -0.36 7.11 99.48 0.71 0.34 16 20 C 0.12 0.48 9.62 83.41 0.80 1.29 16 21 N -0.74 -2.99 5.47 -328.97 -1.80 -4.79 16 22 C 0.05 -0.13 5.60 86.71 0.49 0.36 16 23 C -0.41 0.92 5.24 72.30 0.38 1.29 16 24 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 25 H 0.07 -0.15 7.96 -2.39 -0.02 -0.16 16 26 H 0.06 0.06 7.96 -2.39 -0.02 0.04 16 27 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 28 H 0.07 -0.49 7.96 -2.39 -0.02 -0.51 16 29 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 30 H 0.06 0.27 7.99 -2.39 -0.02 0.25 16 31 H 0.09 -0.30 7.99 -2.39 -0.02 -0.31 16 32 H 0.07 -0.37 7.58 -2.39 -0.02 -0.38 16 33 H 0.06 0.12 8.04 -2.39 -0.02 0.10 16 34 H 0.40 -3.27 8.83 -215.50 -1.90 -5.17 16 35 H 0.12 -0.66 8.14 -2.39 -0.02 -0.68 16 36 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.09 -0.39 8.14 -2.39 -0.02 -0.41 16 39 H 0.07 0.11 8.14 -2.38 -0.02 0.09 16 40 H 0.09 -0.34 7.96 -2.39 -0.02 -0.36 16 41 H 0.39 -2.59 8.74 -74.06 -0.65 -3.24 16 42 H 0.13 0.37 4.33 -2.91 -0.01 0.36 16 43 H 0.41 2.18 8.10 -92.71 -0.75 1.43 16 44 H 0.07 -0.49 7.58 -2.39 -0.02 -0.51 16 45 H 0.08 -0.14 8.04 -2.39 -0.02 -0.15 16 46 H 0.10 -0.49 7.99 -2.39 -0.02 -0.51 16 47 H 0.07 0.15 7.99 -2.39 -0.02 0.13 16 Total: 0.00 -19.87 369.78 0.04 -19.83 By element: Atomic # 1 Polarization: -9.50 SS G_CDS: -1.60 Total: -11.09 kcal Atomic # 6 Polarization: 6.54 SS G_CDS: 5.73 Total: 12.26 kcal Atomic # 7 Polarization: -2.96 SS G_CDS: -4.66 Total: -7.62 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: -1.97 Total: -11.26 kcal Atomic # 14 Polarization: -4.65 SS G_CDS: 2.54 Total: -2.12 kcal Total: -19.87 0.04 -19.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_15413834.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.868 kcal (2) G-P(sol) polarization free energy of solvation -19.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds