Wall clock time and date at job start Thu Mar 4 2021 13:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86294 * 110.01092 * 2 1 4 4 C 1.87569 * 110.02858 * 238.61290 * 2 1 3 5 5 C 1.54023 * 106.79798 * 197.00872 * 4 2 1 6 6 N 1.46441 * 109.55784 * 57.85734 * 5 4 2 7 7 N 1.36602 * 110.99479 * 155.08764 * 6 5 4 8 8 C 1.34773 * 119.99863 * 247.40031 * 7 6 5 9 9 O 1.21279 * 119.99943 * 0.02562 * 8 7 6 10 10 C 1.50701 * 119.99879 * 180.02562 * 8 7 6 11 11 C 1.53033 * 109.33082 * 234.00638 * 10 8 7 12 12 C 1.53567 * 108.55168 * 190.16105 * 11 10 8 13 13 N 1.47026 * 107.64792 * 60.97573 * 12 11 10 14 14 C 1.38925 * 118.88222 * 316.32772 * 13 12 11 15 15 C 1.31121 * 121.84807 * 13.29147 * 14 13 12 16 16 C 1.50700 * 118.54296 * 179.61924 * 15 14 13 17 17 O 1.42899 * 109.47270 * 296.99655 * 16 15 14 18 18 Si 1.86298 * 109.47353 * 57.00385 * 16 15 14 19 19 H 1.48490 * 109.47391 * 59.99329 * 18 16 15 20 20 H 1.48506 * 109.47180 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46618 * 299.99564 * 18 16 15 22 22 C 1.46442 * 113.64059 * 281.03479 * 6 5 4 23 23 C 1.53920 * 109.46159 * 79.02370 * 22 6 5 24 24 H 1.09000 * 109.47149 * 60.00171 * 1 2 3 25 25 H 1.09002 * 109.47224 * 299.99921 * 1 2 3 26 26 H 1.09000 * 109.47155 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47081 * 59.99844 * 3 2 1 28 28 H 1.08991 * 109.47395 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47263 * 300.00533 * 3 2 1 30 30 H 1.08996 * 109.98202 * 316.22737 * 4 2 1 31 31 H 1.09003 * 109.97412 * 77.56817 * 4 2 1 32 32 H 1.09001 * 109.37439 * 297.86022 * 5 4 2 33 33 H 1.08988 * 109.46723 * 177.91439 * 5 4 2 34 34 H 0.96996 * 119.99838 * 67.40848 * 7 6 5 35 35 H 1.08999 * 109.33012 * 353.49512 * 10 8 7 36 36 H 1.09006 * 109.62630 * 309.89337 * 11 10 8 37 37 H 1.09002 * 109.62468 * 70.44971 * 11 10 8 38 38 H 1.09001 * 109.83718 * 301.42971 * 12 11 10 39 39 H 1.09002 * 109.81504 * 180.50736 * 12 11 10 40 40 H 0.96994 * 120.56354 * 136.34551 * 13 12 11 41 41 H 1.08002 * 119.07878 * 193.31655 * 14 13 12 42 42 H 1.09004 * 109.46657 * 176.99943 * 16 15 14 43 43 H 0.96694 * 114.00367 * 294.39191 * 17 16 15 44 44 H 1.08997 * 109.47673 * 319.02266 * 22 6 5 45 45 H 1.09012 * 109.47119 * 199.01891 * 22 6 5 46 46 H 1.09002 * 109.98133 * 182.65831 * 23 22 6 47 47 H 1.09005 * 110.05417 * 61.36596 * 23 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5005 1.7505 0.0000 4 6 2.5054 -0.9178 -1.5044 5 6 3.9826 -1.2523 -1.2245 6 7 4.0816 -2.0464 0.0019 7 7 5.2166 -2.8065 0.0026 8 6 5.1284 -4.1493 -0.0715 9 8 4.0414 -4.6828 -0.1392 10 6 6.3806 -4.9878 -0.0702 11 6 6.3727 -5.9119 -1.2900 12 6 7.5138 -6.9287 -1.1401 13 7 7.2600 -7.7066 0.0814 14 6 6.8492 -7.0394 1.2287 15 6 6.4370 -5.7951 1.1952 16 6 6.0000 -5.1465 2.4834 17 8 4.8608 -5.8362 3.0016 18 14 7.3901 -5.2254 3.7213 19 1 8.5738 -4.5087 3.1827 20 1 6.9596 -4.5857 4.9904 21 1 7.7448 -6.6446 3.9771 22 6 3.9825 -1.2500 1.2268 23 6 2.5055 -0.9177 1.5044 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.1420 2.2677 0.8900 28 1 3.5904 1.7403 0.0005 29 1 2.1420 2.2678 -0.8899 30 1 1.9381 -1.8369 -1.6503 31 1 2.4258 -0.2853 -2.3885 32 1 4.5465 -0.3272 -1.1049 33 1 4.3908 -1.8212 -2.0597 34 1 6.0860 -2.3798 0.0565 35 1 7.2520 -4.3351 -0.1208 36 1 5.4191 -6.4371 -1.3453 37 1 6.5230 -5.3241 -2.1956 38 1 8.4663 -6.4057 -1.0541 39 1 7.5327 -7.5930 -2.0041 40 1 7.3777 -8.6693 0.0864 41 1 6.8703 -7.5600 2.1747 42 1 5.7396 -4.1048 2.2955 43 1 4.0714 -5.7631 2.4481 44 1 4.5465 -0.3251 1.1055 45 1 4.3908 -1.8175 2.0632 46 1 2.4258 -0.2853 2.3886 47 1 1.9370 -1.8361 1.6514 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_15608500.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:01:03 Heat of formation + Delta-G solvation = -53.417843 kcal Electronic energy + Delta-G solvation = -25771.665815 eV Core-core repulsion = 22307.013131 eV Total energy + Delta-G solvation = -3464.652684 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 313.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.51333 -39.80828 -38.21103 -37.39034 -34.25935 -33.23363 -32.54005 -32.12555 -29.43830 -28.49180 -28.34966 -26.85614 -25.70844 -23.91971 -23.14528 -22.18667 -21.69418 -19.36396 -18.88331 -18.18354 -18.12475 -17.84493 -16.67564 -16.25280 -15.94321 -15.70574 -15.32823 -14.99330 -14.67884 -14.51267 -14.32619 -14.18550 -14.08225 -13.95016 -13.73218 -13.58372 -13.53180 -13.28625 -13.20263 -13.06168 -13.00114 -12.81377 -12.55135 -12.31117 -12.28039 -12.12767 -12.05169 -11.41765 -11.07415 -10.83133 -10.78102 -10.68290 -10.43834 -10.30045 -10.18689 -9.61302 -8.36793 1.18542 1.33775 1.54970 1.57395 1.70464 1.80568 1.81379 1.95343 2.05457 2.07408 2.67037 2.69656 3.34724 3.63149 3.82993 3.92802 4.04407 4.17344 4.19884 4.29296 4.30298 4.33981 4.40025 4.46000 4.50612 4.63585 4.68072 4.70339 4.77614 4.80692 4.81435 4.83432 4.84790 4.85093 4.89830 5.01402 5.22952 5.28298 5.43477 5.44886 5.52531 5.58247 5.65182 5.96475 6.34266 6.42321 6.49231 6.65750 6.96670 7.62442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.061 2.939 3 C -0.450 4.450 4 C -0.412 4.412 5 C 0.054 3.946 6 N -0.337 5.337 7 N -0.575 5.575 8 C 0.540 3.460 9 O -0.556 6.556 10 C -0.032 4.032 11 C -0.124 4.124 12 C 0.123 3.877 13 N -0.750 5.750 14 C 0.164 3.836 15 C -0.300 4.300 16 C -0.073 4.073 17 O -0.561 6.561 18 Si 1.039 2.961 19 H -0.239 1.239 20 H -0.284 1.284 21 H -0.263 1.263 22 C 0.053 3.947 23 C -0.412 4.412 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.395 0.605 35 H 0.110 0.890 36 H 0.053 0.947 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.411 0.589 41 H 0.137 0.863 42 H 0.059 0.941 43 H 0.368 0.632 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.093 0.907 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.435 3.364 -2.591 6.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.252 2.748 3 C -0.558 4.558 4 C -0.497 4.497 5 C -0.072 4.072 6 N -0.155 5.155 7 N -0.320 5.320 8 C 0.328 3.672 9 O -0.432 6.432 10 C -0.055 4.055 11 C -0.163 4.163 12 C -0.002 4.002 13 N -0.380 5.380 14 C 0.041 3.959 15 C -0.311 4.311 16 C -0.182 4.182 17 O -0.367 6.367 18 Si 0.860 3.140 19 H -0.162 1.162 20 H -0.210 1.210 21 H -0.187 1.187 22 C -0.074 4.074 23 C -0.498 4.498 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.235 0.765 35 H 0.128 0.872 36 H 0.072 0.928 37 H 0.109 0.891 38 H 0.094 0.906 39 H 0.117 0.883 40 H 0.246 0.754 41 H 0.154 0.846 42 H 0.077 0.923 43 H 0.217 0.783 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.112 0.888 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 5.429 2.566 -1.716 6.245 hybrid contribution -0.258 0.417 -0.735 0.883 sum 5.170 2.983 -2.450 6.452 Atomic orbital electron populations 1.26250 1.21963 1.04068 1.04598 0.78646 0.65535 0.65555 0.65018 1.26140 1.06486 1.18321 1.04883 1.26455 0.99128 1.08248 1.15917 1.22270 0.98118 0.96180 0.90669 1.61479 1.23670 1.27149 1.03235 1.45407 1.04832 1.05238 1.76524 1.20925 0.91240 0.80972 0.74090 1.90657 1.31064 1.72379 1.49064 1.19729 0.94997 0.95994 0.94773 1.21796 0.99992 0.97887 0.96598 1.21696 0.96877 0.94109 0.87490 1.44708 1.74438 1.09740 1.09146 1.20527 0.91893 0.92572 0.90900 1.20320 1.17965 0.97981 0.94870 1.25133 0.96084 0.96418 1.00539 1.86608 1.21817 1.76423 1.51827 0.84234 0.74552 0.80199 0.75042 1.16158 1.20968 1.18740 1.22272 0.98267 0.96243 0.90605 1.26437 0.99044 1.08370 1.15901 0.91006 0.91000 0.92044 0.90836 0.90956 0.90839 0.91589 0.88864 0.91906 0.91453 0.76474 0.87224 0.92766 0.89139 0.90603 0.88317 0.75381 0.84553 0.92304 0.78342 0.91754 0.91147 0.88828 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.39 8.65 113.37 0.98 1.38 16 2 Si 1.06 -4.22 11.76 68.60 0.81 -3.41 16 3 C -0.45 2.19 8.65 113.37 0.98 3.17 16 4 C -0.41 0.24 5.25 72.33 0.38 0.62 16 5 C 0.05 -0.01 5.61 86.74 0.49 0.47 16 6 N -0.34 -0.86 4.00 -512.51 -2.05 -2.91 16 7 N -0.57 -0.50 4.59 -173.54 -0.80 -1.30 16 8 C 0.54 2.95 5.14 87.66 0.45 3.40 16 9 O -0.56 -8.35 16.87 -3.03 -0.05 -8.40 16 10 C -0.03 -0.01 2.71 -12.43 -0.03 -0.04 16 11 C -0.12 0.08 5.43 30.80 0.17 0.25 16 12 C 0.12 -0.57 7.16 86.47 0.62 0.04 16 13 N -0.75 1.66 5.83 -345.85 -2.02 -0.35 16 14 C 0.16 0.25 9.48 83.41 0.79 1.04 16 15 C -0.30 -0.76 4.34 -16.76 -0.07 -0.83 16 16 C -0.07 -0.28 2.30 71.24 0.16 -0.12 16 17 O -0.56 -4.56 12.50 -148.98 -1.86 -6.42 16 18 Si 1.04 2.29 27.17 68.60 1.86 4.16 16 19 H -0.24 0.08 7.11 99.48 0.71 0.78 16 20 H -0.28 -1.66 7.11 99.48 0.71 -0.95 16 21 H -0.26 -0.88 6.80 99.48 0.68 -0.20 16 22 C 0.05 -0.02 5.61 86.70 0.49 0.47 16 23 C -0.41 0.26 5.24 72.29 0.38 0.64 16 24 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 25 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 26 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 27 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 28 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 29 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 30 H 0.07 0.27 7.99 -2.39 -0.02 0.25 16 31 H 0.09 -0.30 7.99 -2.39 -0.02 -0.32 16 32 H 0.06 -0.30 7.58 -2.39 -0.02 -0.32 16 33 H 0.07 0.11 8.04 -2.39 -0.02 0.09 16 34 H 0.39 -2.19 8.67 -215.50 -1.87 -4.06 16 35 H 0.11 -0.59 7.92 -2.39 -0.02 -0.61 16 36 H 0.05 0.32 7.73 -2.38 -0.02 0.30 16 37 H 0.09 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.08 -0.52 8.14 -2.39 -0.02 -0.53 16 39 H 0.10 -0.77 8.14 -2.39 -0.02 -0.79 16 40 H 0.41 -2.28 8.96 -92.71 -0.83 -3.11 16 41 H 0.14 0.15 6.79 -2.91 -0.02 0.13 16 42 H 0.06 0.18 6.69 -2.38 -0.02 0.16 16 43 H 0.37 3.01 9.11 -74.06 -0.68 2.34 16 44 H 0.06 -0.32 7.58 -2.39 -0.02 -0.33 16 45 H 0.07 0.09 8.04 -2.38 -0.02 0.07 16 46 H 0.09 -0.30 7.99 -2.39 -0.02 -0.32 16 47 H 0.07 0.25 7.99 -2.38 -0.02 0.23 16 Total: 0.00 -17.04 370.60 -0.01 -17.06 By element: Atomic # 1 Polarization: -7.22 SS G_CDS: -1.68 Total: -8.90 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 5.78 Total: 10.48 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: -4.87 Total: -4.56 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -1.91 Total: -14.82 kcal Atomic # 14 Polarization: -1.93 SS G_CDS: 2.67 Total: 0.74 kcal Total: -17.04 -0.01 -17.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_15608500.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.362 kcal (2) G-P(sol) polarization free energy of solvation -17.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds