Wall clock time and date at job start Thu Mar 4 2021 13:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86297 * 1 3 3 C 1.86302 * 110.00862 * 2 1 4 4 C 1.87571 * 110.03097 * 121.38171 * 2 1 3 5 5 C 1.53921 * 106.84006 * 163.10501 * 4 2 1 6 6 N 1.46445 * 109.45989 * 301.99403 * 5 4 2 7 7 N 1.36604 * 110.99891 * 204.96731 * 6 5 4 8 8 C 1.34777 * 119.99661 * 119.99901 * 7 6 5 9 9 O 1.21627 * 120.00093 * 0.02562 * 8 7 6 10 10 C 1.47263 * 119.99590 * 179.97438 * 8 7 6 11 11 C 1.36337 * 126.96912 * 179.97438 * 10 8 7 12 12 C 1.50998 * 126.78924 * 0.06671 * 11 10 8 13 13 C 1.53397 * 108.25236 * 164.30145 * 12 11 10 14 14 C 1.53158 * 109.04043 * 48.46563 * 13 12 11 15 15 C 1.53127 * 109.52329 * 290.42124 * 14 13 12 16 16 N 1.35205 * 108.65991 * 180.02562 * 11 10 8 17 17 C 1.36421 * 109.90336 * 359.96584 * 16 11 10 18 18 C 1.50698 * 125.49604 * 180.02562 * 17 16 11 19 19 O 1.42901 * 109.46741 * 30.00106 * 18 17 16 20 20 Si 1.86298 * 109.46990 * 149.99737 * 18 17 16 21 21 H 1.48501 * 109.47092 * 60.00549 * 20 18 17 22 22 H 1.48502 * 109.47000 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47555 * 299.99882 * 20 18 17 24 24 C 1.34490 * 109.01003 * 0.02839 * 17 16 11 25 25 C 1.46444 * 113.64045 * 79.01593 * 6 5 4 26 26 C 1.53922 * 109.46115 * 280.98061 * 25 6 5 27 27 H 1.09003 * 109.47443 * 298.61752 * 1 2 3 28 28 H 1.09000 * 109.47583 * 58.61885 * 1 2 3 29 29 H 1.09004 * 109.47368 * 178.61397 * 1 2 3 30 30 H 1.09000 * 109.47200 * 181.38487 * 3 2 1 31 31 H 1.08997 * 109.47211 * 301.37957 * 3 2 1 32 32 H 1.08993 * 109.47187 * 61.37960 * 3 2 1 33 33 H 1.09003 * 109.97782 * 43.77056 * 4 2 1 34 34 H 1.09004 * 110.05129 * 282.47939 * 4 2 1 35 35 H 1.08993 * 109.47562 * 181.99711 * 5 4 2 36 36 H 1.09003 * 109.47362 * 61.98964 * 5 4 2 37 37 H 0.96997 * 119.99859 * 299.99404 * 7 6 5 38 38 H 1.09005 * 109.70656 * 44.61531 * 12 11 10 39 39 H 1.08999 * 109.71032 * 283.99445 * 12 11 10 40 40 H 1.08997 * 109.53813 * 168.32998 * 13 12 11 41 41 H 1.08992 * 109.54136 * 288.59433 * 13 12 11 42 42 H 1.08990 * 109.46599 * 50.44515 * 14 13 12 43 43 H 1.09002 * 109.45629 * 170.41230 * 14 13 12 44 44 H 1.09000 * 109.56563 * 170.83431 * 15 14 13 45 45 H 1.08993 * 109.57142 * 291.17812 * 15 14 13 46 46 H 1.08994 * 109.47271 * 270.00186 * 18 17 16 47 47 H 0.96698 * 114.00307 * 60.00452 * 19 18 17 48 48 H 1.08002 * 126.81445 * 180.02562 * 24 17 16 49 49 H 1.09003 * 109.47076 * 40.98024 * 25 6 5 50 50 H 1.08995 * 109.47202 * 160.98501 * 25 6 5 51 51 H 1.08995 * 109.97917 * 298.68148 * 26 25 6 52 52 H 1.08997 * 110.05901 * 177.38004 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5004 1.7506 0.0000 4 6 2.5055 -0.9177 1.5045 5 6 3.9825 -1.2499 1.2270 6 7 4.0817 -2.0464 0.0020 7 7 5.2167 -2.8064 0.0028 8 6 5.1286 -4.1492 -0.0713 9 8 4.0384 -4.6843 -0.1393 10 6 6.3522 -4.9685 -0.0710 11 6 6.4287 -6.3280 -0.1396 12 6 5.2729 -7.2952 -0.2326 13 6 5.8206 -8.6568 -0.6791 14 6 7.0361 -9.0131 0.1819 15 6 8.2008 -8.0821 -0.1667 16 7 7.7311 -6.6900 -0.1119 17 6 8.5199 -5.5802 -0.0262 18 6 10.0259 -5.5790 0.0270 19 8 10.5286 -6.7087 -0.6892 20 14 10.6734 -4.0137 -0.7486 21 1 10.1509 -2.8397 -0.0043 22 1 12.1575 -4.0128 -0.6967 23 1 10.2281 -3.9412 -2.1633 24 6 7.7366 -4.4873 0.0032 25 6 3.9826 -1.2522 -1.2244 26 6 2.5055 -0.9206 -1.5027 27 1 -0.3634 0.4922 0.9021 28 1 -0.3634 0.5351 -0.8773 29 1 -0.3634 -1.0274 -0.0249 30 1 3.5901 1.7405 -0.0248 31 1 2.1220 2.2751 -0.8773 32 1 2.1622 2.2604 0.9020 33 1 1.9380 -1.8368 1.6504 34 1 2.4256 -0.2864 2.3895 35 1 4.3907 -1.8173 2.0633 36 1 4.5464 -0.3250 1.1056 37 1 6.0861 -2.3796 0.0566 38 1 4.5485 -6.9333 -0.9622 39 1 4.7958 -7.3928 0.7426 40 1 5.0503 -9.4179 -0.5552 41 1 6.1182 -8.6044 -1.7263 42 1 6.7815 -8.8976 1.2353 43 1 7.3268 -10.0460 -0.0101 44 1 9.0086 -8.2235 0.5512 45 1 8.5595 -8.3066 -1.1712 46 1 10.3528 -5.6322 1.0654 47 1 10.2762 -6.7270 -1.6225 48 1 8.0619 -3.4594 0.0679 49 1 4.5465 -0.3271 -1.1048 50 1 4.3908 -1.8212 -2.0596 51 1 1.9381 -1.8400 -1.6468 52 1 2.4243 -0.2904 -2.3883 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_16915396.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:01:12 Heat of formation + Delta-G solvation = -27.354658 kcal Electronic energy + Delta-G solvation = -30195.683193 eV Core-core repulsion = 26320.170794 eV Total energy + Delta-G solvation = -3875.512399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 351.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.80801 -40.74158 -38.44513 -37.89478 -36.84234 -34.07793 -33.42252 -32.13296 -31.19610 -29.97413 -29.15228 -28.34428 -27.98973 -26.45198 -24.62750 -23.92385 -23.87474 -22.07199 -21.69733 -21.14023 -19.73305 -19.03156 -18.20151 -17.29463 -17.02280 -16.66366 -16.57876 -15.91968 -15.69048 -15.58686 -15.33174 -15.24307 -15.10803 -14.80763 -14.65734 -14.50234 -14.19886 -14.09324 -13.94543 -13.81465 -13.58982 -13.53961 -13.25192 -13.18712 -13.05066 -12.99191 -12.79749 -12.67528 -12.37584 -12.28416 -12.11991 -12.06053 -11.97315 -11.77565 -11.72391 -10.93931 -10.76165 -10.68585 -10.45375 -10.30563 -10.19752 -9.64527 -9.59907 -9.07695 0.71245 0.96789 1.33756 1.52490 1.55251 1.63718 1.80284 1.90545 1.97166 2.06697 2.11088 2.54939 2.67975 3.33879 3.40108 3.48757 3.59107 3.69669 3.80712 3.82669 4.08700 4.19198 4.29061 4.31990 4.33634 4.36081 4.41376 4.42137 4.54950 4.61041 4.67378 4.67988 4.74064 4.80307 4.82253 4.82390 4.83338 4.85706 4.86083 4.89971 4.96775 5.00972 5.03060 5.14486 5.23270 5.44308 5.45052 5.59727 5.66095 5.67058 5.97167 6.00234 6.20667 6.35549 6.55285 6.58120 7.65832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.460 4.460 2 Si 1.062 2.938 3 C -0.450 4.450 4 C -0.412 4.412 5 C 0.054 3.946 6 N -0.334 5.334 7 N -0.571 5.571 8 C 0.604 3.396 9 O -0.566 6.566 10 C -0.254 4.254 11 C 0.110 3.890 12 C -0.054 4.054 13 C -0.123 4.123 14 C -0.136 4.136 15 C 0.104 3.896 16 N -0.424 5.424 17 C -0.009 4.009 18 C -0.052 4.052 19 O -0.548 6.548 20 Si 1.006 2.994 21 H -0.248 1.248 22 H -0.268 1.268 23 H -0.264 1.264 24 C -0.180 4.180 25 C 0.054 3.946 26 C -0.413 4.413 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.392 0.608 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.110 0.890 44 H 0.103 0.897 45 H 0.101 0.899 46 H 0.131 0.869 47 H 0.388 0.612 48 H 0.164 0.836 49 H 0.063 0.937 50 H 0.063 0.937 51 H 0.066 0.934 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.618 1.065 -0.435 4.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.567 4.567 2 Si 1.254 2.746 3 C -0.558 4.558 4 C -0.497 4.497 5 C -0.073 4.073 6 N -0.153 5.153 7 N -0.314 5.314 8 C 0.395 3.605 9 O -0.445 6.445 10 C -0.265 4.265 11 C -0.009 4.009 12 C -0.092 4.092 13 C -0.161 4.161 14 C -0.173 4.173 15 C -0.015 4.015 16 N -0.100 5.100 17 C -0.118 4.118 18 C -0.162 4.162 19 O -0.355 6.355 20 Si 0.827 3.173 21 H -0.172 1.172 22 H -0.192 1.192 23 H -0.188 1.188 24 C -0.204 4.204 25 C -0.073 4.073 26 C -0.498 4.498 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.114 0.886 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.232 0.768 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.106 0.894 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.128 0.872 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.149 0.851 47 H 0.237 0.763 48 H 0.181 0.819 49 H 0.081 0.919 50 H 0.082 0.918 51 H 0.085 0.915 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.253 0.632 -0.290 4.309 hybrid contribution 0.326 0.398 -0.193 0.549 sum 4.578 1.030 -0.483 4.718 Atomic orbital electron populations 1.26214 1.21603 1.04145 1.04693 0.78633 0.65728 0.65510 0.64740 1.26128 1.06428 1.18233 1.04971 1.26464 0.98747 1.08427 1.16082 1.22268 0.98492 0.96076 0.90453 1.61427 1.23437 1.27046 1.03396 1.44886 1.04689 1.04871 1.76983 1.17470 0.87727 0.80680 0.74661 1.90715 1.30140 1.72550 1.51091 1.19830 0.92652 0.92644 1.21342 1.20482 0.85885 0.93529 1.00990 1.20449 0.93078 0.92808 1.02889 1.21697 0.98441 0.95863 1.00054 1.21942 0.94097 1.00670 1.00596 1.22347 0.98009 0.76261 1.04910 1.44048 1.04130 1.07505 1.54295 1.21039 0.94454 0.85837 1.10485 1.24851 0.86908 1.01283 1.03156 1.86476 1.76565 1.45043 1.27389 0.84912 0.78664 0.74356 0.79336 1.17175 1.19219 1.18765 1.21965 0.90268 0.98629 1.09547 1.22274 0.98400 0.96057 0.90565 1.26471 0.98790 1.08401 1.16131 0.90872 0.90905 0.91982 0.91068 0.90757 0.90690 0.91427 0.88641 0.91447 0.91774 0.76821 0.90206 0.90339 0.89357 0.91029 0.91498 0.87184 0.87887 0.88136 0.85131 0.76283 0.81901 0.91879 0.91835 0.91504 0.88793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.22 8.65 113.37 0.98 1.20 16 2 Si 1.06 -3.09 11.76 68.60 0.81 -2.28 16 3 C -0.45 1.83 8.65 113.37 0.98 2.81 16 4 C -0.41 -0.33 5.24 72.29 0.38 0.05 16 5 C 0.05 0.12 5.61 86.70 0.49 0.61 16 6 N -0.33 -2.08 4.00 -512.69 -2.05 -4.13 16 7 N -0.57 -3.66 4.63 -175.99 -0.81 -4.48 16 8 C 0.60 7.28 7.91 86.62 0.69 7.97 16 9 O -0.57 -11.10 15.66 -4.12 -0.06 -11.17 16 10 C -0.25 -2.06 6.28 -19.12 -0.12 -2.18 16 11 C 0.11 0.71 6.57 41.69 0.27 0.98 16 12 C -0.05 -0.29 5.32 30.08 0.16 -0.13 16 13 C -0.12 0.18 5.98 30.78 0.18 0.36 16 14 C -0.14 0.58 5.92 30.69 0.18 0.76 16 15 C 0.10 -0.38 5.32 86.32 0.46 0.08 16 16 N -0.42 -0.72 3.11 -493.62 -1.54 -2.25 16 17 C -0.01 -0.01 6.15 40.99 0.25 0.25 16 18 C -0.05 0.21 2.99 71.24 0.21 0.42 16 19 O -0.55 2.42 10.68 -148.98 -1.59 0.83 16 20 Si 1.01 -4.04 26.55 68.60 1.82 -2.22 16 21 H -0.25 1.03 6.80 99.48 0.68 1.70 16 22 H -0.27 0.32 7.11 99.48 0.71 1.03 16 23 H -0.26 0.47 7.11 99.48 0.71 1.17 16 24 C -0.18 -0.43 9.09 23.64 0.21 -0.22 16 25 C 0.05 0.15 5.61 86.70 0.49 0.64 16 26 C -0.41 -0.51 5.24 72.29 0.38 -0.13 16 27 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 28 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 29 H 0.06 0.11 7.96 -2.38 -0.02 0.09 16 30 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 31 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 32 H 0.07 -0.33 7.96 -2.39 -0.02 -0.34 16 33 H 0.07 0.35 7.99 -2.39 -0.02 0.33 16 34 H 0.09 -0.22 8.00 -2.38 -0.02 -0.24 16 35 H 0.07 0.30 8.04 -2.39 -0.02 0.28 16 36 H 0.06 -0.16 7.58 -2.39 -0.02 -0.18 16 37 H 0.39 0.26 7.96 -215.50 -1.71 -1.45 16 38 H 0.08 0.74 7.40 -2.38 -0.02 0.72 16 39 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.09 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.07 -0.13 8.12 -2.39 -0.02 -0.15 16 42 H 0.07 -0.15 8.11 -2.39 -0.02 -0.17 16 43 H 0.11 -0.90 8.14 -2.39 -0.02 -0.92 16 44 H 0.10 -0.44 7.70 -2.39 -0.02 -0.46 16 45 H 0.10 -0.67 7.94 -2.39 -0.02 -0.69 16 46 H 0.13 -0.75 7.96 -2.39 -0.02 -0.77 16 47 H 0.39 -3.67 8.63 -74.06 -0.64 -4.31 16 48 H 0.16 -0.39 6.32 -2.91 -0.02 -0.41 16 49 H 0.06 -0.13 7.58 -2.39 -0.02 -0.15 16 50 H 0.06 0.34 8.04 -2.39 -0.02 0.32 16 51 H 0.07 0.38 7.99 -2.39 -0.02 0.36 16 52 H 0.09 -0.16 7.99 -2.39 -0.02 -0.18 16 Total: 0.00 -19.38 403.49 2.05 -17.33 By element: Atomic # 1 Polarization: -4.37 SS G_CDS: -0.72 Total: -5.09 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: 6.20 Total: 13.45 kcal Atomic # 7 Polarization: -6.46 SS G_CDS: -4.40 Total: -10.86 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: -1.66 Total: -10.34 kcal Atomic # 14 Polarization: -7.13 SS G_CDS: 2.63 Total: -4.50 kcal Total: -19.38 2.05 -17.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_16915396.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.021 kcal (2) G-P(sol) polarization free energy of solvation -19.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds