Wall clock time and date at job start Thu Mar 4 2021 13:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86303 * 1 3 3 C 1.86299 * 110.01025 * 2 1 4 4 C 1.87572 * 110.03343 * 121.38679 * 2 1 3 5 5 C 1.53919 * 106.83721 * 163.10164 * 4 2 1 6 6 N 1.46444 * 109.46397 * 301.99170 * 5 4 2 7 7 N 1.36599 * 111.00410 * 204.97044 * 6 5 4 8 8 C 1.34777 * 120.00346 * 119.99639 * 7 6 5 9 9 O 1.21287 * 119.99551 * 0.02562 * 8 7 6 10 10 C 1.50697 * 120.00269 * 179.97438 * 8 7 6 11 11 O 1.42900 * 109.46989 * 180.02562 * 10 8 7 12 12 C 1.35896 * 116.99818 * 180.02562 * 11 10 8 13 13 C 1.38711 * 120.05694 * 0.02562 * 12 11 10 14 14 C 1.38169 * 119.94549 * 179.97438 * 13 12 11 15 15 C 1.38242 * 120.05457 * 359.97438 * 14 13 12 16 16 C 1.38295 * 120.11401 * 359.97438 * 15 14 13 17 17 C 1.38122 * 120.05026 * 0.02562 * 16 15 14 18 18 C 1.50707 * 120.02333 * 179.97438 * 17 16 15 19 19 O 1.42896 * 109.47019 * 105.00041 * 18 17 16 20 20 Si 1.86298 * 109.47215 * 344.99806 * 18 17 16 21 21 H 1.48506 * 109.46978 * 60.00192 * 20 18 17 22 22 H 1.48497 * 109.47242 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47210 * 300.00371 * 20 18 17 24 24 C 1.46441 * 113.63907 * 79.01983 * 6 5 4 25 25 C 1.53932 * 109.45898 * 280.98380 * 24 6 5 26 26 H 1.08993 * 109.46913 * 298.61097 * 1 2 3 27 27 H 1.08995 * 109.47112 * 58.61332 * 1 2 3 28 28 H 1.09003 * 109.46655 * 178.61368 * 1 2 3 29 29 H 1.09000 * 109.47152 * 181.38460 * 3 2 1 30 30 H 1.08999 * 109.47382 * 301.38392 * 3 2 1 31 31 H 1.08999 * 109.47042 * 61.39140 * 3 2 1 32 32 H 1.09000 * 109.97433 * 43.76962 * 4 2 1 33 33 H 1.09000 * 110.05471 * 282.47956 * 4 2 1 34 34 H 1.09004 * 109.47512 * 181.99387 * 5 4 2 35 35 H 1.09003 * 109.47713 * 61.99152 * 5 4 2 36 36 H 0.97006 * 119.99900 * 300.00274 * 7 6 5 37 37 H 1.08999 * 109.46926 * 60.00562 * 10 8 7 38 38 H 1.08998 * 109.46872 * 300.00249 * 10 8 7 39 39 H 1.07998 * 120.02756 * 359.95116 * 13 12 11 40 40 H 1.07998 * 119.97385 * 179.97438 * 14 13 12 41 41 H 1.07997 * 119.94707 * 180.02562 * 15 14 13 42 42 H 1.07997 * 119.97026 * 179.74858 * 16 15 14 43 43 H 1.09003 * 109.46978 * 224.99971 * 18 17 16 44 44 H 0.96700 * 114.00139 * 299.99525 * 19 18 17 45 45 H 1.09000 * 109.47389 * 40.97450 * 24 6 5 46 46 H 1.09000 * 109.47322 * 160.98790 * 24 6 5 47 47 H 1.09003 * 109.97463 * 298.67334 * 25 24 6 48 48 H 1.09000 * 110.05221 * 177.38094 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5005 1.7505 0.0000 4 6 2.5056 -0.9178 1.5044 5 6 3.9826 -1.2500 1.2267 6 7 4.0817 -2.0464 0.0017 7 7 5.2167 -2.8065 0.0023 8 6 5.1286 -4.1493 -0.0718 9 8 4.0415 -4.6828 -0.1395 10 6 6.3808 -4.9878 -0.0717 11 8 6.0285 -6.3700 -0.1579 12 6 7.0491 -7.2672 -0.1686 13 6 8.3624 -6.8265 -0.0972 14 6 9.3982 -7.7408 -0.1077 15 6 9.1266 -9.0939 -0.1889 16 6 7.8181 -9.5359 -0.2592 17 6 6.7791 -8.6259 -0.2490 18 6 5.3534 -9.1082 -0.3262 19 8 4.7434 -8.9993 0.9614 20 14 5.3289 -10.8879 -0.8765 21 1 6.0802 -11.7181 0.0991 22 1 3.9241 -11.3634 -0.9519 23 1 5.9629 -11.0011 -2.2145 24 6 3.9826 -1.2522 -1.2246 25 6 2.5055 -0.9204 -1.5028 26 1 -0.3633 0.4921 0.9021 27 1 -0.3633 0.5352 -0.8772 28 1 -0.3633 -1.0274 -0.0249 29 1 3.5902 1.7404 -0.0248 30 1 2.1220 2.2751 -0.8773 31 1 2.1625 2.2603 0.9022 32 1 1.9381 -1.8369 1.6502 33 1 2.4258 -0.2867 2.3895 34 1 4.3909 -1.8175 2.0630 35 1 4.5466 -0.3251 1.1054 36 1 6.0862 -2.3797 0.0562 37 1 6.9364 -4.8108 0.8492 38 1 6.9995 -4.7168 -0.9272 39 1 8.5751 -5.7696 -0.0337 40 1 10.4209 -7.3982 -0.0525 41 1 9.9376 -9.8070 -0.1967 42 1 7.6087 -10.5932 -0.3267 43 1 4.8020 -8.4989 -1.0422 44 1 5.1828 -9.5169 1.6499 45 1 4.5464 -0.3271 -1.1050 46 1 4.3908 -1.8212 -2.0600 47 1 1.9381 -1.8399 -1.6471 48 1 2.4243 -0.2902 -2.3884 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_2989392.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:01:24 Heat of formation + Delta-G solvation = -68.609242 kcal Electronic energy + Delta-G solvation = -27364.415079 eV Core-core repulsion = 23544.932704 eV Total energy + Delta-G solvation = -3819.482376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.64074 -40.87984 -39.02962 -38.12071 -37.47057 -34.27724 -32.73450 -32.15328 -31.33424 -30.12657 -29.11453 -28.35477 -27.54224 -26.65808 -23.95094 -23.65422 -22.61424 -22.14002 -21.69124 -19.51661 -18.94954 -18.04103 -17.86345 -17.49893 -16.97357 -16.71682 -16.47212 -15.98608 -15.86438 -15.66164 -15.10733 -15.06084 -14.99735 -14.56513 -14.25142 -13.98963 -13.87650 -13.77223 -13.60727 -13.57115 -13.45872 -13.20474 -13.07068 -13.01911 -13.00014 -12.82596 -12.52507 -12.30399 -12.22712 -12.06706 -11.84124 -11.62215 -11.03712 -10.78530 -10.47595 -10.42524 -10.34008 -10.22893 -9.96993 -9.67079 -9.21298 0.23253 0.41359 1.15052 1.20374 1.40494 1.49625 1.50910 1.79236 1.89583 1.93593 2.06602 2.38703 2.66556 2.70548 3.24302 3.54122 3.57611 3.77026 3.88118 3.96693 4.05556 4.12762 4.17937 4.27581 4.31211 4.31458 4.36166 4.38783 4.54443 4.65936 4.66740 4.67966 4.80178 4.80423 4.83543 4.86021 4.89057 4.98340 4.99398 5.28692 5.36409 5.42353 5.43582 5.52117 5.57492 5.65654 5.74530 5.92160 6.17663 6.25487 6.45156 6.75794 7.47574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.063 2.937 3 C -0.448 4.448 4 C -0.414 4.414 5 C 0.055 3.945 6 N -0.342 5.342 7 N -0.563 5.563 8 C 0.525 3.475 9 O -0.548 6.548 10 C 0.044 3.956 11 O -0.310 6.310 12 C 0.132 3.868 13 C -0.211 4.211 14 C -0.075 4.075 15 C -0.155 4.155 16 C -0.097 4.097 17 C -0.168 4.168 18 C -0.081 4.081 19 O -0.554 6.554 20 Si 0.993 3.007 21 H -0.234 1.234 22 H -0.280 1.280 23 H -0.253 1.253 24 C 0.055 3.945 25 C -0.415 4.415 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.403 0.597 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.157 0.843 40 H 0.154 0.846 41 H 0.149 0.851 42 H 0.141 0.859 43 H 0.094 0.906 44 H 0.384 0.616 45 H 0.069 0.931 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.229 4.928 0.430 9.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.254 2.746 3 C -0.556 4.556 4 C -0.500 4.500 5 C -0.072 4.072 6 N -0.161 5.161 7 N -0.310 5.310 8 C 0.311 3.689 9 O -0.423 6.423 10 C -0.035 4.035 11 O -0.223 6.223 12 C 0.087 3.913 13 C -0.229 4.229 14 C -0.093 4.093 15 C -0.173 4.173 16 C -0.115 4.115 17 C -0.169 4.169 18 C -0.190 4.190 19 O -0.361 6.361 20 Si 0.815 3.185 21 H -0.157 1.157 22 H -0.206 1.206 23 H -0.177 1.177 24 C -0.072 4.072 25 C -0.500 4.500 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.244 0.756 37 H 0.142 0.858 38 H 0.143 0.857 39 H 0.174 0.826 40 H 0.172 0.828 41 H 0.167 0.833 42 H 0.158 0.842 43 H 0.112 0.888 44 H 0.232 0.768 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.481 3.717 -0.219 7.475 hybrid contribution 1.032 0.847 0.389 1.390 sum 7.513 4.564 0.170 8.792 Atomic orbital electron populations 1.26271 1.22170 1.03975 1.04635 0.78626 0.65447 0.65688 0.64815 1.26108 1.06588 1.17964 1.04952 1.26463 0.99099 1.08322 1.16076 1.22275 0.98330 0.96325 0.90254 1.61391 1.23572 1.27404 1.03731 1.44779 1.05427 1.04266 1.76557 1.20534 0.90631 0.81871 0.75820 1.90762 1.31166 1.72407 1.47929 1.22589 0.94527 0.79676 1.06701 1.86187 1.32413 1.15387 1.88327 1.19022 0.87123 0.88949 0.96247 1.21612 0.90811 1.02330 1.08155 1.21390 0.99996 0.92710 0.95200 1.21391 0.96488 0.96853 1.02600 1.21177 0.92695 0.99345 0.98239 1.19796 0.96780 0.91376 1.08969 1.25027 0.91268 1.13330 0.89356 1.86569 1.56544 1.74037 1.18913 0.85138 0.79412 0.73218 0.80696 1.15727 1.20602 1.17723 1.22279 0.98235 0.96311 0.90362 1.26477 0.99143 1.08285 1.16139 0.90943 0.90978 0.92233 0.90744 0.90816 0.90737 0.91742 0.88529 0.91001 0.91162 0.75556 0.85837 0.85655 0.82552 0.82786 0.83337 0.84190 0.88779 0.76760 0.91259 0.91400 0.91832 0.88689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.24 8.65 113.37 0.98 1.22 16 2 Si 1.06 -4.33 11.76 68.60 0.81 -3.52 16 3 C -0.45 2.50 8.65 113.37 0.98 3.48 16 4 C -0.41 0.31 5.24 72.29 0.38 0.69 16 5 C 0.05 -0.06 5.61 86.70 0.49 0.43 16 6 N -0.34 -0.89 4.00 -512.67 -2.05 -2.95 16 7 N -0.56 0.07 4.63 -173.53 -0.80 -0.73 16 8 C 0.53 3.47 8.01 87.66 0.70 4.17 16 9 O -0.55 -10.77 16.82 15.99 0.27 -10.50 16 10 C 0.04 -0.03 5.22 71.23 0.37 0.34 16 11 O -0.31 -2.70 9.00 -73.35 -0.66 -3.37 16 12 C 0.13 0.69 6.66 22.51 0.15 0.84 16 13 C -0.21 0.27 9.04 22.37 0.20 0.47 16 14 C -0.08 0.22 10.04 22.25 0.22 0.45 16 15 C -0.16 0.26 10.04 22.28 0.22 0.48 16 16 C -0.10 -0.12 8.66 22.26 0.19 0.07 16 17 C -0.17 -0.91 5.27 -19.77 -0.10 -1.01 16 18 C -0.08 -0.57 2.38 71.24 0.17 -0.40 16 19 O -0.55 -5.22 12.88 -148.98 -1.92 -7.14 16 20 Si 0.99 2.72 25.49 68.60 1.75 4.47 16 21 H -0.23 0.12 6.74 99.48 0.67 0.79 16 22 H -0.28 -1.96 7.11 99.48 0.71 -1.25 16 23 H -0.25 -0.77 7.11 99.48 0.71 -0.06 16 24 C 0.05 -0.03 5.61 86.70 0.49 0.46 16 25 C -0.42 0.13 5.24 72.30 0.38 0.51 16 26 H 0.07 -0.09 7.96 -2.39 -0.02 -0.11 16 27 H 0.07 -0.08 7.96 -2.39 -0.02 -0.10 16 28 H 0.06 0.12 7.96 -2.39 -0.02 0.11 16 29 H 0.07 -0.50 7.96 -2.39 -0.02 -0.52 16 30 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 31 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 32 H 0.06 0.28 7.99 -2.39 -0.02 0.27 16 33 H 0.10 -0.36 8.00 -2.39 -0.02 -0.38 16 34 H 0.07 0.02 8.04 -2.39 -0.02 0.00 16 35 H 0.07 -0.45 7.58 -2.39 -0.02 -0.47 16 36 H 0.40 -3.54 8.83 -215.49 -1.90 -5.44 16 37 H 0.12 -0.88 7.66 -2.39 -0.02 -0.90 16 38 H 0.13 -0.96 7.66 -2.39 -0.02 -0.98 16 39 H 0.16 -1.23 6.30 -2.91 -0.02 -1.25 16 40 H 0.15 -1.30 8.06 -2.91 -0.02 -1.33 16 41 H 0.15 -0.93 8.06 -2.91 -0.02 -0.95 16 42 H 0.14 -0.26 4.89 -2.91 -0.01 -0.28 16 43 H 0.09 1.00 7.83 -2.39 -0.02 0.98 16 44 H 0.38 0.36 8.70 -74.06 -0.64 -0.28 16 45 H 0.07 -0.41 7.58 -2.39 -0.02 -0.43 16 46 H 0.07 0.09 8.04 -2.39 -0.02 0.07 16 47 H 0.06 0.32 7.99 -2.39 -0.02 0.30 16 48 H 0.09 -0.30 7.99 -2.39 -0.02 -0.32 16 Total: 0.00 -27.29 388.83 2.35 -24.94 By element: Atomic # 1 Polarization: -12.53 SS G_CDS: -0.86 Total: -13.40 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 5.82 Total: 12.19 kcal Atomic # 7 Polarization: -0.82 SS G_CDS: -2.86 Total: -3.67 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -2.31 Total: -21.01 kcal Atomic # 14 Polarization: -1.61 SS G_CDS: 2.56 Total: 0.95 kcal Total: -27.29 2.35 -24.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_2989392.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.670 kcal (2) G-P(sol) polarization free energy of solvation -27.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds