Wall clock time and date at job start Thu Mar 4 2021 13:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86304 * 1 3 3 C 1.86292 * 110.00990 * 2 1 4 4 C 1.87572 * 110.03087 * 121.39018 * 2 1 3 5 5 C 1.53925 * 106.83550 * 163.10485 * 4 2 1 6 6 N 1.46448 * 109.45646 * 301.98670 * 5 4 2 7 7 N 1.36604 * 110.99582 * 204.97018 * 6 5 4 8 8 C 1.34777 * 119.99773 * 120.00578 * 7 6 5 9 9 O 1.21275 * 119.99848 * 359.97438 * 8 7 6 10 10 C 1.50700 * 120.00079 * 179.97438 * 8 7 6 11 11 O 1.42895 * 109.47240 * 179.97438 * 10 8 7 12 12 C 1.35903 * 117.00049 * 179.97438 * 11 10 8 13 13 C 1.38726 * 120.05472 * 359.73125 * 12 11 10 14 14 C 1.38146 * 119.94298 * 180.27535 * 13 12 11 15 15 C 1.38261 * 120.05809 * 359.97438 * 14 13 12 16 16 C 1.50697 * 119.94527 * 179.97438 * 15 14 13 17 17 O 1.42894 * 109.47056 * 245.01989 * 16 15 14 18 18 Si 1.86297 * 109.47141 * 5.02305 * 16 15 14 19 19 H 1.48496 * 109.47344 * 60.00027 * 18 16 15 20 20 H 1.48508 * 109.47098 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46752 * 299.99623 * 18 16 15 22 22 C 1.38270 * 120.11090 * 359.97438 * 15 14 13 23 23 C 1.38143 * 120.05378 * 0.02562 * 22 15 14 24 24 C 1.46442 * 113.64057 * 79.02668 * 6 5 4 25 25 C 1.53931 * 109.45560 * 280.97987 * 24 6 5 26 26 H 1.08993 * 109.47118 * 298.60813 * 1 2 3 27 27 H 1.08996 * 109.47002 * 58.61363 * 1 2 3 28 28 H 1.09001 * 109.47145 * 178.61567 * 1 2 3 29 29 H 1.09003 * 109.47290 * 181.38193 * 3 2 1 30 30 H 1.09001 * 109.47579 * 301.38802 * 3 2 1 31 31 H 1.09008 * 109.46917 * 61.38930 * 3 2 1 32 32 H 1.08998 * 109.98061 * 43.77158 * 4 2 1 33 33 H 1.09002 * 110.05043 * 282.47573 * 4 2 1 34 34 H 1.09004 * 109.47037 * 181.99305 * 5 4 2 35 35 H 1.08993 * 109.47851 * 61.98425 * 5 4 2 36 36 H 0.96994 * 120.00227 * 299.99733 * 7 6 5 37 37 H 1.09000 * 109.47388 * 59.99480 * 10 8 7 38 38 H 1.08999 * 109.46559 * 299.99734 * 10 8 7 39 39 H 1.07998 * 120.02970 * 0.24234 * 13 12 11 40 40 H 1.08005 * 119.96788 * 179.97438 * 14 13 12 41 41 H 1.09004 * 109.46769 * 125.01919 * 16 15 14 42 42 H 0.96698 * 114.00399 * 59.99917 * 17 16 15 43 43 H 1.07993 * 119.97145 * 179.97438 * 22 15 14 44 44 H 1.08000 * 120.02832 * 179.97438 * 23 22 15 45 45 H 1.09007 * 109.47485 * 40.97198 * 24 6 5 46 46 H 1.08994 * 109.47713 * 160.97834 * 24 6 5 47 47 H 1.09005 * 109.97494 * 298.66922 * 25 24 6 48 48 H 1.09004 * 109.97568 * 177.34061 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5005 1.7505 0.0000 4 6 2.5055 -0.9179 1.5043 5 6 3.9826 -1.2500 1.2267 6 7 4.0816 -2.0465 0.0017 7 7 5.2167 -2.8065 0.0023 8 6 5.1285 -4.1493 -0.0719 9 8 4.0415 -4.6828 -0.1388 10 6 6.3807 -4.9878 -0.0717 11 8 6.0284 -6.3701 -0.1569 12 6 7.0491 -7.2673 -0.1685 13 6 8.3628 -6.8261 -0.1050 14 6 9.3987 -7.7399 -0.1228 15 6 9.1270 -9.0932 -0.2032 16 6 10.2590 -10.0878 -0.2229 17 8 10.2776 -10.7633 -1.4820 18 14 11.8748 -9.1947 0.0266 19 1 11.8555 -8.4927 1.3350 20 1 12.9904 -10.1747 0.0065 21 1 12.0666 -8.2047 -1.0636 22 6 7.8185 -9.5356 -0.2655 23 6 6.7791 -8.6258 -0.2480 24 6 3.9826 -1.2522 -1.2247 25 6 2.5054 -0.9204 -1.5028 26 1 -0.3633 0.4920 0.9021 27 1 -0.3633 0.5352 -0.8773 28 1 -0.3633 -1.0274 -0.0248 29 1 3.5902 1.7404 -0.0248 30 1 2.1219 2.2751 -0.8773 31 1 2.1624 2.2603 0.9023 32 1 1.9381 -1.8371 1.6502 33 1 2.4257 -0.2868 2.3895 34 1 4.3909 -1.8175 2.0630 35 1 4.5465 -0.3252 1.1054 36 1 6.0861 -2.3798 0.0561 37 1 6.9364 -4.8109 0.8491 38 1 6.9994 -4.7168 -0.9272 39 1 8.5755 -5.7692 -0.0424 40 1 10.4216 -7.3969 -0.0738 41 1 10.1182 -10.8144 0.5773 42 1 10.3997 -10.1770 -2.2412 43 1 7.6089 -10.5931 -0.3286 44 1 5.7572 -8.9718 -0.2971 45 1 4.5465 -0.3271 -1.1050 46 1 4.3908 -1.8211 -2.0600 47 1 1.9380 -1.8399 -1.6472 48 1 2.4257 -0.2896 -2.3881 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_2989410.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:01:35 Heat of formation + Delta-G solvation = -70.505824 kcal Electronic energy + Delta-G solvation = -26620.319173 eV Core-core repulsion = 22800.754555 eV Total energy + Delta-G solvation = -3819.564618 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.61344 -40.86344 -39.30406 -38.37368 -37.08926 -34.28828 -32.40710 -32.15073 -31.74993 -30.33504 -29.14183 -28.35210 -27.65672 -26.13148 -24.06127 -23.94665 -22.53772 -22.07883 -21.71969 -19.54529 -18.99789 -18.20552 -17.87703 -17.49656 -17.00190 -16.57906 -16.47914 -16.05057 -15.80236 -15.60156 -15.20384 -15.14290 -14.95917 -14.44339 -14.25374 -13.98595 -13.88152 -13.75020 -13.61534 -13.58553 -13.55481 -13.43813 -13.20177 -13.06766 -13.00631 -12.82269 -12.30047 -12.25586 -12.16741 -12.08298 -12.03050 -11.55533 -11.05935 -10.78451 -10.47393 -10.43546 -10.35949 -10.22560 -10.04877 -9.67642 -9.24281 0.26210 0.29826 1.18195 1.21619 1.47689 1.48084 1.54931 1.80037 1.94066 1.94876 2.06712 2.35697 2.64807 2.66799 3.23191 3.52553 3.59448 3.71452 3.83087 3.93959 3.99944 4.05295 4.18280 4.27925 4.28033 4.31646 4.36360 4.42949 4.58427 4.66357 4.67071 4.72009 4.80471 4.80876 4.83871 4.85945 4.89147 4.95828 4.99951 5.15020 5.23611 5.42601 5.43969 5.49411 5.57969 5.65757 5.68865 5.91636 6.16707 6.22047 6.41901 6.74387 7.46044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.065 2.935 3 C -0.449 4.449 4 C -0.414 4.414 5 C 0.054 3.946 6 N -0.342 5.342 7 N -0.563 5.563 8 C 0.526 3.474 9 O -0.551 6.551 10 C 0.044 3.956 11 O -0.319 6.319 12 C 0.121 3.879 13 C -0.201 4.201 14 C -0.089 4.089 15 C -0.160 4.160 16 C -0.078 4.078 17 O -0.555 6.555 18 Si 0.984 3.016 19 H -0.255 1.255 20 H -0.280 1.280 21 H -0.247 1.247 22 C -0.055 4.055 23 C -0.165 4.165 24 C 0.054 3.946 25 C -0.416 4.416 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.404 0.596 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.162 0.838 40 H 0.141 0.859 41 H 0.121 0.879 42 H 0.388 0.612 43 H 0.140 0.860 44 H 0.128 0.872 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.697 7.258 0.493 9.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.256 2.744 3 C -0.557 4.557 4 C -0.499 4.499 5 C -0.072 4.072 6 N -0.161 5.161 7 N -0.310 5.310 8 C 0.313 3.687 9 O -0.426 6.426 10 C -0.035 4.035 11 O -0.232 6.232 12 C 0.076 3.924 13 C -0.219 4.219 14 C -0.107 4.107 15 C -0.161 4.161 16 C -0.188 4.188 17 O -0.363 6.363 18 Si 0.808 3.192 19 H -0.179 1.179 20 H -0.205 1.205 21 H -0.171 1.171 22 C -0.073 4.073 23 C -0.184 4.184 24 C -0.072 4.072 25 C -0.501 4.501 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.245 0.755 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.180 0.820 40 H 0.158 0.842 41 H 0.138 0.862 42 H 0.237 0.763 43 H 0.158 0.842 44 H 0.146 0.854 45 H 0.087 0.913 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.053 6.435 0.932 8.234 hybrid contribution 0.302 0.720 -0.355 0.858 sum 5.355 7.155 0.577 8.955 Atomic orbital electron populations 1.26277 1.22221 1.03985 1.04595 0.78589 0.65376 0.65578 0.64834 1.26129 1.06579 1.18128 1.04905 1.26456 0.99101 1.08354 1.16020 1.22280 0.98327 0.96346 0.90263 1.61413 1.23507 1.27416 1.03730 1.44785 1.05495 1.04297 1.76410 1.20529 0.90598 0.81884 0.75736 1.90746 1.31211 1.72454 1.48179 1.22624 0.94575 0.79251 1.07049 1.86123 1.32655 1.15795 1.88638 1.19202 0.87030 0.89494 0.96685 1.21455 0.90602 1.02096 1.07795 1.21089 0.99659 0.92332 0.97615 1.20377 0.95694 0.94613 1.05416 1.25019 1.04491 0.99605 0.89733 1.86487 1.96066 1.37985 1.15718 0.85207 0.74832 0.78009 0.81120 1.17886 1.20541 1.17050 1.20950 0.91053 0.99956 0.95386 1.20670 1.00843 0.90389 1.06465 1.22284 0.98241 0.96327 0.90378 1.26480 0.99147 1.08307 1.16120 0.90986 0.91039 0.92186 0.90772 0.90881 0.90787 0.91625 0.88555 0.90880 0.91215 0.75472 0.85453 0.85439 0.82034 0.84164 0.86165 0.76269 0.84217 0.85384 0.91297 0.91352 0.91744 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.62 8.65 113.37 0.98 1.61 16 2 Si 1.06 -5.33 11.76 68.60 0.81 -4.53 16 3 C -0.45 2.78 8.65 113.37 0.98 3.76 16 4 C -0.41 0.80 5.24 72.29 0.38 1.17 16 5 C 0.05 -0.13 5.61 86.70 0.49 0.36 16 6 N -0.34 -0.42 4.00 -512.66 -2.05 -2.47 16 7 N -0.56 0.96 4.63 -173.54 -0.80 0.16 16 8 C 0.53 2.43 8.01 87.66 0.70 3.13 16 9 O -0.55 -9.57 16.82 16.02 0.27 -9.30 16 10 C 0.04 -0.12 5.22 71.24 0.37 0.25 16 11 O -0.32 -2.06 9.67 -73.42 -0.71 -2.77 16 12 C 0.12 0.46 6.69 22.51 0.15 0.61 16 13 C -0.20 0.35 9.04 22.36 0.20 0.55 16 14 C -0.09 0.14 8.66 22.25 0.19 0.33 16 15 C -0.16 -0.04 5.35 -19.85 -0.11 -0.15 16 16 C -0.08 0.12 2.80 71.23 0.20 0.32 16 17 O -0.56 -0.19 12.83 -148.98 -1.91 -2.10 16 18 Si 0.98 -2.69 25.13 68.60 1.72 -0.97 16 19 H -0.25 0.54 7.11 99.48 0.71 1.25 16 20 H -0.28 -0.43 7.11 99.48 0.71 0.28 16 21 H -0.25 0.94 7.04 99.48 0.70 1.64 16 22 C -0.06 -0.13 9.68 22.25 0.22 0.08 16 23 C -0.16 -0.81 9.99 22.37 0.22 -0.59 16 24 C 0.05 -0.09 5.61 86.70 0.49 0.40 16 25 C -0.42 0.55 5.24 72.30 0.38 0.93 16 26 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 27 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 28 H 0.06 0.07 7.96 -2.39 -0.02 0.05 16 29 H 0.07 -0.54 7.96 -2.39 -0.02 -0.56 16 30 H 0.07 -0.43 7.96 -2.39 -0.02 -0.45 16 31 H 0.07 -0.45 7.96 -2.38 -0.02 -0.47 16 32 H 0.06 0.20 7.99 -2.39 -0.02 0.18 16 33 H 0.10 -0.46 8.00 -2.39 -0.02 -0.48 16 34 H 0.07 -0.08 8.04 -2.39 -0.02 -0.10 16 35 H 0.07 -0.52 7.58 -2.39 -0.02 -0.54 16 36 H 0.40 -4.16 8.83 -215.50 -1.90 -6.07 16 37 H 0.13 -1.21 7.67 -2.39 -0.02 -1.23 16 38 H 0.13 -1.22 7.65 -2.39 -0.02 -1.24 16 39 H 0.16 -1.45 6.30 -2.91 -0.02 -1.47 16 40 H 0.14 -0.77 4.86 -2.91 -0.01 -0.78 16 41 H 0.12 -0.32 7.96 -2.39 -0.02 -0.34 16 42 H 0.39 -2.38 8.70 -74.06 -0.64 -3.02 16 43 H 0.14 0.09 8.06 -2.91 -0.02 0.07 16 44 H 0.13 0.68 8.06 -2.91 -0.02 0.66 16 45 H 0.07 -0.48 7.58 -2.38 -0.02 -0.49 16 46 H 0.07 0.02 8.04 -2.39 -0.02 0.00 16 47 H 0.06 0.25 7.99 -2.38 -0.02 0.23 16 48 H 0.09 -0.38 7.99 -2.39 -0.02 -0.40 16 Total: 0.00 -25.15 389.61 2.33 -22.82 By element: Atomic # 1 Polarization: -12.77 SS G_CDS: -0.83 Total: -13.60 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 5.84 Total: 12.77 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -2.86 Total: -2.31 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: -2.35 Total: -14.18 kcal Atomic # 14 Polarization: -8.03 SS G_CDS: 2.53 Total: -5.50 kcal Total: -25.15 2.33 -22.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_2989410.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.685 kcal (2) G-P(sol) polarization free energy of solvation -25.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds