Wall clock time and date at job start Thu Mar 4 2021 13:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86300 * 110.01047 * 2 1 4 4 C 1.87570 * 110.02975 * 121.38686 * 2 1 3 5 5 C 1.53936 * 106.83610 * 163.10618 * 4 2 1 6 6 N 1.46443 * 109.45643 * 301.98878 * 5 4 2 7 7 N 1.36595 * 111.00044 * 204.97041 * 6 5 4 8 8 C 1.34777 * 120.00100 * 120.00342 * 7 6 5 9 9 O 1.21279 * 120.00166 * 359.97438 * 8 7 6 10 10 C 1.50706 * 119.99762 * 180.02562 * 8 7 6 11 11 O 1.42906 * 109.46702 * 179.97438 * 10 8 7 12 12 C 1.35903 * 116.99522 * 179.97438 * 11 10 8 13 13 C 1.38711 * 120.05778 * 359.72788 * 12 11 10 14 14 C 1.38165 * 119.93985 * 179.76453 * 13 12 11 15 15 C 1.38247 * 120.05776 * 0.48565 * 14 13 12 16 16 C 1.38282 * 120.10987 * 359.76886 * 15 14 13 17 17 C 1.50699 * 119.97102 * 179.97438 * 16 15 14 18 18 O 1.42899 * 109.47607 * 245.02462 * 17 16 15 19 19 Si 1.86303 * 109.47085 * 5.02686 * 17 16 15 20 20 H 1.48501 * 109.47047 * 299.99538 * 19 17 16 21 21 H 1.48500 * 109.46932 * 59.99586 * 19 17 16 22 22 H 1.48499 * 109.47190 * 179.97438 * 19 17 16 23 23 C 1.38128 * 120.05821 * 359.97438 * 16 15 14 24 24 C 1.46444 * 113.64257 * 79.02132 * 6 5 4 25 25 C 1.53929 * 109.45827 * 280.98156 * 24 6 5 26 26 H 1.09001 * 109.47291 * 298.61160 * 1 2 3 27 27 H 1.09001 * 109.47144 * 58.61536 * 1 2 3 28 28 H 1.09007 * 109.46790 * 178.61178 * 1 2 3 29 29 H 1.09000 * 109.47119 * 181.38272 * 3 2 1 30 30 H 1.08994 * 109.47123 * 301.38843 * 3 2 1 31 31 H 1.08999 * 109.46766 * 61.38793 * 3 2 1 32 32 H 1.08991 * 109.98410 * 43.77546 * 4 2 1 33 33 H 1.09000 * 110.05429 * 282.47207 * 4 2 1 34 34 H 1.08998 * 109.47298 * 181.99991 * 5 4 2 35 35 H 1.08996 * 109.47575 * 61.98583 * 5 4 2 36 36 H 0.96999 * 119.99852 * 299.99988 * 7 6 5 37 37 H 1.09000 * 109.47318 * 299.99141 * 10 8 7 38 38 H 1.09000 * 109.47161 * 59.99772 * 10 8 7 39 39 H 1.08000 * 120.02686 * 359.97438 * 13 12 11 40 40 H 1.08002 * 119.96691 * 180.23616 * 14 13 12 41 41 H 1.07999 * 119.94076 * 179.74347 * 15 14 13 42 42 H 1.09002 * 109.46732 * 125.02512 * 17 16 15 43 43 H 0.96698 * 113.99634 * 180.02562 * 18 17 16 44 44 H 1.07997 * 120.02980 * 180.02562 * 23 16 15 45 45 H 1.09010 * 109.47153 * 40.97058 * 24 6 5 46 46 H 1.08995 * 109.47544 * 160.98125 * 24 6 5 47 47 H 1.08994 * 109.98009 * 298.66963 * 25 24 6 48 48 H 1.08998 * 110.05229 * 177.38017 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5005 1.7505 0.0000 4 6 2.5054 -0.9178 1.5044 5 6 3.9827 -1.2500 1.2268 6 7 4.0817 -2.0464 0.0018 7 7 5.2167 -2.8064 0.0025 8 6 5.1285 -4.1493 -0.0718 9 8 4.0415 -4.6829 -0.1387 10 6 6.3808 -4.9878 -0.0704 11 8 6.0284 -6.3701 -0.1558 12 6 7.0491 -7.2673 -0.1665 13 6 8.3626 -6.8262 -0.1020 14 6 9.3983 -7.7408 -0.1081 15 6 9.1266 -9.0939 -0.1886 16 6 7.8182 -9.5359 -0.2583 17 6 7.5257 -11.0116 -0.3465 18 8 6.9188 -11.3025 -1.6070 19 14 9.1151 -11.9703 -0.1865 20 1 10.0395 -11.5826 -1.2821 21 1 9.7457 -11.6680 1.1235 22 1 8.8268 -13.4245 -0.2727 23 6 6.7791 -8.6259 -0.2471 24 6 3.9826 -1.2522 -1.2246 25 6 2.5054 -0.9205 -1.5027 26 1 -0.3634 0.4921 0.9022 27 1 -0.3633 0.5352 -0.8773 28 1 -0.3633 -1.0274 -0.0249 29 1 3.5902 1.7404 -0.0248 30 1 2.1219 2.2751 -0.8772 31 1 2.1624 2.2603 0.9022 32 1 1.9382 -1.8369 1.6503 33 1 2.4257 -0.2867 2.3895 34 1 4.3908 -1.8175 2.0630 35 1 4.5465 -0.3251 1.1055 36 1 6.0861 -2.3797 0.0563 37 1 7.0003 -4.7170 -0.9254 38 1 6.9356 -4.8108 0.8509 39 1 8.5754 -5.7690 -0.0436 40 1 10.4210 -7.3980 -0.0541 41 1 9.9378 -9.8069 -0.1974 42 1 6.8472 -11.2961 0.4578 43 1 6.7023 -12.2365 -1.7330 44 1 5.7573 -8.9716 -0.3012 45 1 4.5465 -0.3270 -1.1049 46 1 4.3908 -1.8212 -2.0599 47 1 1.9381 -1.8399 -1.6471 48 1 2.4243 -0.2903 -2.3883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_4860298.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:02:04 Heat of formation + Delta-G solvation = -69.314290 kcal Electronic energy + Delta-G solvation = -26671.404941 eV Core-core repulsion = 22851.891993 eV Total energy + Delta-G solvation = -3819.512949 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.162 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.60413 -40.85111 -39.22477 -38.33209 -37.26893 -34.28715 -32.59438 -32.14901 -31.74787 -30.08710 -29.09829 -28.34959 -27.59284 -26.66932 -23.94755 -23.69490 -22.77662 -22.03774 -21.53459 -19.18141 -18.93263 -18.48860 -17.88516 -17.48738 -17.38876 -16.97611 -16.47392 -15.96557 -15.81621 -15.57641 -15.16052 -15.11144 -14.68266 -14.46983 -14.25187 -13.98204 -13.88420 -13.77835 -13.61363 -13.60290 -13.54084 -13.28218 -13.19826 -13.06500 -13.00588 -12.82187 -12.51231 -12.29887 -12.18518 -12.07794 -11.89487 -11.66456 -11.06061 -10.78251 -10.47258 -10.43522 -10.37751 -10.22509 -9.90623 -9.67366 -9.30137 0.19289 0.36649 1.11253 1.22030 1.47695 1.48192 1.53361 1.79994 1.90530 1.94239 2.07016 2.35918 2.62799 2.66968 3.23122 3.46187 3.54582 3.81977 3.85345 3.98961 4.05854 4.07407 4.18404 4.24942 4.26885 4.27975 4.31894 4.37386 4.49349 4.65225 4.66405 4.67273 4.80613 4.80897 4.84007 4.86429 4.89487 4.96860 4.99969 5.21141 5.33286 5.42711 5.43895 5.44129 5.57972 5.65520 5.66155 5.92000 6.16722 6.23109 6.42735 6.79433 7.46240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.065 2.935 3 C -0.449 4.449 4 C -0.414 4.414 5 C 0.054 3.946 6 N -0.342 5.342 7 N -0.563 5.563 8 C 0.526 3.474 9 O -0.552 6.552 10 C 0.045 3.955 11 O -0.321 6.321 12 C 0.116 3.884 13 C -0.202 4.202 14 C -0.071 4.071 15 C -0.174 4.174 16 C -0.049 4.049 17 C -0.094 4.094 18 O -0.565 6.565 19 Si 0.993 3.007 20 H -0.265 1.265 21 H -0.253 1.253 22 H -0.257 1.257 23 C -0.146 4.146 24 C 0.054 3.946 25 C -0.416 4.416 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.404 0.596 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.398 0.602 44 H 0.119 0.881 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.063 0.937 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.391 4.979 1.774 8.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.256 2.744 3 C -0.557 4.557 4 C -0.499 4.499 5 C -0.072 4.072 6 N -0.161 5.161 7 N -0.309 5.309 8 C 0.312 3.688 9 O -0.426 6.426 10 C -0.034 4.034 11 O -0.234 6.234 12 C 0.071 3.929 13 C -0.221 4.221 14 C -0.089 4.089 15 C -0.192 4.192 16 C -0.050 4.050 17 C -0.203 4.203 18 O -0.374 6.374 19 Si 0.815 3.185 20 H -0.190 1.190 21 H -0.177 1.177 22 H -0.181 1.181 23 C -0.164 4.164 24 C -0.072 4.072 25 C -0.501 4.501 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.246 0.754 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.182 0.818 40 H 0.179 0.821 41 H 0.151 0.849 42 H 0.108 0.892 43 H 0.248 0.752 44 H 0.137 0.863 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.082 0.918 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.889 4.401 1.718 7.550 hybrid contribution 0.104 0.193 -0.058 0.227 sum 5.993 4.594 1.660 7.731 Atomic orbital electron populations 1.26277 1.22202 1.03976 1.04613 0.78594 0.65391 0.65615 0.64790 1.26118 1.06584 1.18056 1.04926 1.26457 0.99090 1.08347 1.16034 1.22283 0.98341 0.96349 0.90237 1.61399 1.23538 1.27422 1.03754 1.44773 1.05507 1.04255 1.76410 1.20534 0.90586 0.81907 0.75725 1.90746 1.31237 1.72472 1.48190 1.22628 0.94586 0.79157 1.07062 1.86117 1.32670 1.15842 1.88761 1.19167 0.87380 0.89194 0.97165 1.21619 0.90559 1.02428 1.07461 1.21274 1.00491 0.91775 0.95380 1.21206 0.95408 0.97579 1.04959 1.19323 0.92951 0.94276 0.98412 1.25005 1.09422 0.96481 0.89407 1.86473 1.83095 1.33210 1.34586 0.85091 0.75229 0.77793 0.80343 1.18970 1.17737 1.18087 1.20325 1.00139 0.90235 1.05738 1.22282 0.98251 0.96327 0.90367 1.26486 0.99142 1.08306 1.16181 0.90945 0.91032 0.92210 0.90760 0.90872 0.90744 0.91654 0.88501 0.90863 0.91174 0.75441 0.85528 0.85294 0.81814 0.82119 0.84891 0.89223 0.75161 0.86255 0.91245 0.91434 0.91815 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.45 8.65 113.37 0.98 1.43 16 2 Si 1.06 -4.86 11.76 68.60 0.81 -4.05 16 3 C -0.45 2.64 8.65 113.37 0.98 3.62 16 4 C -0.41 0.61 5.24 72.30 0.38 0.99 16 5 C 0.05 -0.10 5.61 86.71 0.49 0.39 16 6 N -0.34 -0.67 4.00 -512.65 -2.05 -2.73 16 7 N -0.56 0.47 4.63 -173.53 -0.80 -0.33 16 8 C 0.53 3.05 8.01 87.66 0.70 3.75 16 9 O -0.55 -10.30 16.82 16.01 0.27 -10.03 16 10 C 0.04 -0.06 5.22 71.24 0.37 0.31 16 11 O -0.32 -2.77 9.67 -73.42 -0.71 -3.48 16 12 C 0.12 0.74 6.69 22.51 0.15 0.89 16 13 C -0.20 0.07 9.04 22.37 0.20 0.28 16 14 C -0.07 0.05 10.04 22.25 0.22 0.28 16 15 C -0.17 -0.47 8.67 22.28 0.19 -0.28 16 16 C -0.05 -0.29 5.38 -19.88 -0.11 -0.39 16 17 C -0.09 -0.17 2.79 71.24 0.20 0.03 16 18 O -0.56 -1.93 12.81 -148.98 -1.91 -3.83 16 19 Si 0.99 -0.71 25.14 68.60 1.72 1.01 16 20 H -0.27 -0.52 7.04 99.48 0.70 0.18 16 21 H -0.25 0.06 7.11 99.48 0.71 0.77 16 22 H -0.26 0.26 7.11 99.48 0.71 0.97 16 23 C -0.15 -1.29 9.62 22.37 0.22 -1.07 16 24 C 0.05 -0.05 5.61 86.70 0.49 0.44 16 25 C -0.42 0.27 5.24 72.30 0.38 0.65 16 26 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 27 H 0.07 -0.11 7.96 -2.39 -0.02 -0.12 16 28 H 0.06 0.09 7.96 -2.38 -0.02 0.08 16 29 H 0.07 -0.52 7.96 -2.39 -0.02 -0.54 16 30 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 31 H 0.07 -0.44 7.96 -2.39 -0.02 -0.46 16 32 H 0.06 0.23 7.99 -2.39 -0.02 0.21 16 33 H 0.10 -0.43 8.00 -2.39 -0.02 -0.45 16 34 H 0.07 -0.05 8.04 -2.39 -0.02 -0.07 16 35 H 0.07 -0.50 7.58 -2.39 -0.02 -0.51 16 36 H 0.40 -3.85 8.83 -215.50 -1.90 -5.76 16 37 H 0.13 -1.02 7.65 -2.39 -0.02 -1.04 16 38 H 0.13 -1.10 7.68 -2.39 -0.02 -1.11 16 39 H 0.16 -1.34 6.30 -2.91 -0.02 -1.36 16 40 H 0.16 -1.16 8.06 -2.91 -0.02 -1.18 16 41 H 0.13 -0.04 4.86 -2.91 -0.01 -0.05 16 42 H 0.09 -0.12 7.96 -2.39 -0.02 -0.14 16 43 H 0.40 -2.43 8.74 -74.06 -0.65 -3.08 16 44 H 0.12 1.29 8.06 -2.91 -0.02 1.26 16 45 H 0.07 -0.44 7.58 -2.38 -0.02 -0.46 16 46 H 0.07 0.08 8.04 -2.39 -0.02 0.06 16 47 H 0.06 0.29 7.99 -2.39 -0.02 0.27 16 48 H 0.09 -0.32 7.99 -2.39 -0.02 -0.34 16 Total: 0.00 -27.90 389.66 2.33 -25.57 By element: Atomic # 1 Polarization: -12.60 SS G_CDS: -0.84 Total: -13.44 kcal Atomic # 6 Polarization: 5.47 SS G_CDS: 5.84 Total: 11.31 kcal Atomic # 7 Polarization: -0.20 SS G_CDS: -2.86 Total: -3.06 kcal Atomic # 8 Polarization: -14.99 SS G_CDS: -2.35 Total: -17.34 kcal Atomic # 14 Polarization: -5.57 SS G_CDS: 2.53 Total: -3.04 kcal Total: -27.90 2.33 -25.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_4860298.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.743 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds