Wall clock time and date at job start Thu Mar 4 2021 13:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86299 * 110.01373 * 2 1 4 4 C 1.87579 * 110.02873 * 121.38305 * 2 1 3 5 5 C 1.53928 * 106.83689 * 163.10341 * 4 2 1 6 6 N 1.46439 * 109.46172 * 301.99210 * 5 4 2 7 7 N 1.36595 * 111.00010 * 204.97208 * 6 5 4 8 8 C 1.34774 * 120.00237 * 119.99991 * 7 6 5 9 9 O 1.21704 * 120.00064 * 359.97438 * 8 7 6 10 10 C 1.46677 * 120.00490 * 179.97438 * 8 7 6 11 11 C 1.37866 * 126.23737 * 179.97438 * 10 8 7 12 12 C 1.39835 * 107.08650 * 179.80471 * 11 10 8 13 13 C 1.35451 * 107.86581 * 0.38260 * 12 11 10 14 14 C 1.50701 * 125.56710 * 179.88051 * 13 12 11 15 15 O 1.42900 * 109.46882 * 119.69289 * 14 13 12 16 16 Si 1.86300 * 109.46948 * 359.69274 * 14 13 12 17 17 H 1.48500 * 109.46912 * 180.02562 * 16 14 13 18 18 H 1.48503 * 109.46942 * 299.99736 * 16 14 13 19 19 H 1.48503 * 109.47262 * 60.00072 * 16 14 13 20 20 N 1.35535 * 108.87107 * 359.61107 * 13 12 11 21 21 C 1.46444 * 113.63838 * 79.01911 * 6 5 4 22 22 C 1.53928 * 109.46113 * 280.97715 * 21 6 5 23 23 H 1.09000 * 109.47228 * 298.61654 * 1 2 3 24 24 H 1.09006 * 109.46583 * 58.61627 * 1 2 3 25 25 H 1.09001 * 109.47171 * 178.61212 * 1 2 3 26 26 H 1.08998 * 109.47580 * 181.37916 * 3 2 1 27 27 H 1.08999 * 109.46718 * 301.38388 * 3 2 1 28 28 H 1.09000 * 109.46834 * 61.38076 * 3 2 1 29 29 H 1.08995 * 109.97894 * 43.77177 * 4 2 1 30 30 H 1.08997 * 110.05407 * 282.47958 * 4 2 1 31 31 H 1.09004 * 109.46981 * 181.99614 * 5 4 2 32 32 H 1.09002 * 109.47146 * 61.99106 * 5 4 2 33 33 H 0.96996 * 119.99675 * 299.99766 * 7 6 5 34 34 H 1.07998 * 126.45551 * 0.03880 * 11 10 8 35 35 H 1.07997 * 126.07044 * 180.27375 * 12 11 10 36 36 H 1.09004 * 109.46875 * 239.68823 * 14 13 12 37 37 H 0.96706 * 114.00057 * 299.99456 * 15 14 13 38 38 H 0.96996 * 125.68392 * 180.27462 * 20 13 12 39 39 H 1.08998 * 109.47342 * 40.98232 * 21 6 5 40 40 H 1.09001 * 109.46930 * 160.98690 * 21 6 5 41 41 H 1.08992 * 109.98216 * 298.68466 * 22 21 6 42 42 H 1.08995 * 110.05401 * 177.37895 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5006 1.7505 0.0000 4 6 2.5054 -0.9178 1.5045 5 6 3.9826 -1.2500 1.2270 6 7 4.0817 -2.0465 0.0021 7 7 5.2166 -2.8065 0.0029 8 6 5.1285 -4.1493 -0.0712 9 8 4.0376 -4.6848 -0.1384 10 6 6.3472 -4.9655 -0.0709 11 6 6.4068 -6.3411 -0.1410 12 6 7.7592 -6.6956 -0.1163 13 6 8.4858 -5.5561 -0.0248 14 6 9.9897 -5.4777 0.0330 15 8 10.4702 -4.7202 -1.0793 16 14 10.7040 -7.1971 -0.0314 17 1 12.1859 -7.1199 0.0262 18 1 10.2046 -7.9842 1.1246 19 1 10.2911 -7.8577 -1.2957 20 7 7.6398 -4.4975 0.0002 21 6 3.9827 -1.2523 -1.2243 22 6 2.5055 -0.9206 -1.5027 23 1 -0.3634 0.4922 0.9021 24 1 -0.3633 0.5352 -0.8774 25 1 -0.3633 -1.0274 -0.0249 26 1 3.5902 1.7404 -0.0247 27 1 2.1220 2.2750 -0.8773 28 1 2.1624 2.2603 0.9021 29 1 1.9380 -1.8369 1.6505 30 1 2.4256 -0.2866 2.3896 31 1 4.3907 -1.8175 2.0634 32 1 4.5464 -0.3251 1.1057 33 1 6.0860 -2.3798 0.0568 34 1 5.5672 -7.0173 -0.2068 35 1 8.1543 -7.6997 -0.1604 36 1 10.2928 -4.9927 0.9610 37 1 10.2369 -5.0941 -1.9401 38 1 7.9015 -3.5653 0.0582 39 1 4.5466 -0.3272 -1.1047 40 1 4.3909 -1.8213 -2.0596 41 1 1.9381 -1.8400 -1.6468 42 1 2.4244 -0.2904 -2.3882 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_6580494.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:02:23 Heat of formation + Delta-G solvation = -23.374429 kcal Electronic energy + Delta-G solvation = -22166.707607 eV Core-core repulsion = 18886.206801 eV Total energy + Delta-G solvation = -3280.500806 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 297.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.56323 -40.80671 -38.58343 -37.65226 -34.36428 -32.21908 -32.18370 -31.44248 -29.42872 -28.49851 -28.35525 -26.45540 -23.97868 -23.40653 -22.21585 -21.54049 -21.18917 -19.97362 -18.59392 -18.05153 -16.89616 -16.64629 -16.42308 -15.89391 -15.55545 -15.44611 -15.19671 -14.78990 -14.44820 -14.20629 -14.09342 -14.02273 -13.92426 -13.71709 -13.59127 -13.59047 -13.20903 -13.07889 -13.03507 -12.84138 -12.32673 -12.29683 -12.08975 -11.83452 -11.37593 -10.80326 -10.65015 -10.52282 -10.49273 -10.25100 -10.11048 -9.74102 -9.31504 0.28550 1.10885 1.46256 1.50629 1.58877 1.64260 1.78213 1.92898 1.93778 2.05478 2.16295 2.27123 2.64985 3.20967 3.47611 3.60173 3.73139 4.13754 4.20540 4.23569 4.24907 4.27548 4.35779 4.54473 4.62616 4.63105 4.79814 4.81638 4.82617 4.84264 4.87241 4.92646 4.97935 5.04598 5.41042 5.42677 5.52841 5.58266 5.64549 5.73449 5.87359 6.09121 6.25577 6.40768 6.60728 7.36734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.462 4.462 2 Si 1.065 2.935 3 C -0.450 4.450 4 C -0.413 4.413 5 C 0.053 3.947 6 N -0.335 5.335 7 N -0.569 5.569 8 C 0.605 3.395 9 O -0.549 6.549 10 C -0.059 4.059 11 C -0.113 4.113 12 C -0.217 4.217 13 C 0.035 3.965 14 C -0.061 4.061 15 O -0.552 6.552 16 Si 1.010 2.990 17 H -0.272 1.272 18 H -0.258 1.258 19 H -0.253 1.253 20 N -0.509 5.509 21 C 0.053 3.947 22 C -0.414 4.414 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.390 0.610 34 H 0.145 0.855 35 H 0.159 0.841 36 H 0.135 0.865 37 H 0.393 0.607 38 H 0.429 0.571 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.596 4.334 0.223 6.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.256 2.744 3 C -0.558 4.558 4 C -0.498 4.498 5 C -0.074 4.074 6 N -0.154 5.154 7 N -0.313 5.313 8 C 0.393 3.607 9 O -0.425 6.425 10 C -0.174 4.174 11 C -0.140 4.140 12 C -0.241 4.241 13 C -0.085 4.085 14 C -0.171 4.171 15 O -0.359 6.359 16 Si 0.833 3.167 17 H -0.197 1.197 18 H -0.182 1.182 19 H -0.177 1.177 20 N -0.107 5.107 21 C -0.074 4.074 22 C -0.499 4.499 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.230 0.770 34 H 0.163 0.837 35 H 0.176 0.824 36 H 0.153 0.847 37 H 0.243 0.757 38 H 0.269 0.731 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.040 3.385 0.615 5.307 hybrid contribution 0.367 0.976 -0.338 1.096 sum 4.407 4.361 0.277 6.207 Atomic orbital electron populations 1.26246 1.21856 1.04130 1.04662 0.78597 0.65607 0.65480 0.64707 1.26139 1.06468 1.18261 1.04962 1.26461 0.98710 1.08523 1.16126 1.22301 0.98671 0.96185 0.90211 1.61472 1.22779 1.27421 1.03751 1.44910 1.05055 1.04683 1.76613 1.17117 0.87281 0.80670 0.75613 1.90832 1.28913 1.72418 1.50336 1.20146 0.83283 0.94163 1.19781 1.21440 0.97879 0.92515 1.02207 1.20911 0.92710 0.98639 1.11853 1.21375 0.93706 0.87003 1.06399 1.24928 0.87143 1.11087 0.93947 1.86490 1.78417 1.53798 1.17146 0.84772 0.78168 0.72337 0.81470 1.19654 1.18208 1.17700 1.41873 1.04063 1.09642 1.55079 1.22300 0.98570 0.96163 0.90318 1.26475 0.98755 1.08493 1.16205 0.90921 0.90967 0.92000 0.90967 0.90811 0.90730 0.91334 0.88498 0.91147 0.91429 0.76967 0.83731 0.82403 0.84692 0.75739 0.73068 0.91532 0.91583 0.91433 0.88668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.67 8.65 113.37 0.98 1.65 16 2 Si 1.06 -4.87 11.76 68.60 0.81 -4.06 16 3 C -0.45 2.51 8.65 113.37 0.98 3.49 16 4 C -0.41 0.53 5.24 72.30 0.38 0.91 16 5 C 0.05 -0.04 5.61 86.70 0.49 0.45 16 6 N -0.34 -1.02 4.00 -512.67 -2.05 -3.07 16 7 N -0.57 -1.08 4.63 -176.38 -0.82 -1.89 16 8 C 0.60 5.09 7.89 86.45 0.68 5.77 16 9 O -0.55 -9.90 17.21 -4.36 -0.08 -9.97 16 10 C -0.06 -0.25 7.06 40.35 0.28 0.03 16 11 C -0.11 -0.61 10.65 22.57 0.24 -0.37 16 12 C -0.22 -0.20 9.32 22.01 0.21 0.01 16 13 C 0.03 -0.07 6.47 41.34 0.27 0.19 16 14 C -0.06 0.35 3.08 71.24 0.22 0.57 16 15 O -0.55 2.75 12.88 -148.98 -1.92 0.83 16 16 Si 1.01 -4.79 25.83 68.60 1.77 -3.01 16 17 H -0.27 0.42 7.11 99.48 0.71 1.13 16 18 H -0.26 0.71 7.11 99.48 0.71 1.42 16 19 H -0.25 0.95 7.11 99.48 0.71 1.66 16 20 N -0.51 1.24 5.99 -171.93 -1.03 0.21 16 21 C 0.05 0.00 5.61 86.70 0.49 0.48 16 22 C -0.41 0.30 5.24 72.30 0.38 0.68 16 23 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 24 H 0.07 -0.14 7.96 -2.38 -0.02 -0.16 16 25 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 26 H 0.07 -0.46 7.96 -2.39 -0.02 -0.48 16 27 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 28 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 29 H 0.07 0.22 7.99 -2.39 -0.02 0.20 16 30 H 0.10 -0.41 8.00 -2.39 -0.02 -0.43 16 31 H 0.07 0.07 8.04 -2.38 -0.02 0.05 16 32 H 0.07 -0.39 7.58 -2.39 -0.02 -0.40 16 33 H 0.39 -2.04 7.96 -215.50 -1.72 -3.76 16 34 H 0.14 0.90 8.06 -2.91 -0.02 0.88 16 35 H 0.16 -0.36 6.17 -2.91 -0.02 -0.37 16 36 H 0.14 -1.15 7.96 -2.39 -0.02 -1.17 16 37 H 0.39 -4.05 8.70 -74.05 -0.64 -4.70 16 38 H 0.43 -3.45 8.19 -92.71 -0.76 -4.21 16 39 H 0.07 -0.34 7.58 -2.39 -0.02 -0.36 16 40 H 0.07 0.15 8.04 -2.39 -0.02 0.13 16 41 H 0.07 0.26 7.99 -2.39 -0.02 0.25 16 42 H 0.09 -0.33 7.99 -2.39 -0.02 -0.35 16 Total: 0.00 -19.74 345.11 0.95 -18.78 By element: Atomic # 1 Polarization: -10.36 SS G_CDS: -1.32 Total: -11.68 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: 5.59 Total: 13.86 kcal Atomic # 7 Polarization: -0.85 SS G_CDS: -3.90 Total: -4.75 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: -1.99 Total: -9.14 kcal Atomic # 14 Polarization: -9.65 SS G_CDS: 2.58 Total: -7.08 kcal Total: -19.74 0.95 -18.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_6580494.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.591 kcal (2) G-P(sol) polarization free energy of solvation -19.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds