Wall clock time and date at job start Thu Mar 4 2021 13:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86291 * 1 3 3 C 1.86305 * 110.01314 * 2 1 4 4 C 1.87574 * 110.03188 * 121.38156 * 2 1 3 5 5 C 1.53923 * 106.83790 * 163.10285 * 4 2 1 6 6 N 1.46436 * 109.46027 * 301.99102 * 5 4 2 7 7 N 1.36602 * 111.00347 * 204.96861 * 6 5 4 8 8 C 1.34772 * 120.00247 * 119.99688 * 7 6 5 9 9 O 1.21647 * 119.99887 * 0.02562 * 8 7 6 10 10 C 1.47188 * 120.00517 * 180.02562 * 8 7 6 11 11 C 1.36011 * 123.45838 * 359.97438 * 10 8 7 12 12 S 1.70447 * 110.81832 * 180.02562 * 11 10 8 13 13 C 1.75507 * 92.44198 * 0.02562 * 12 11 10 14 14 C 1.50706 * 124.70724 * 179.97438 * 13 12 11 15 15 O 1.42903 * 109.46818 * 120.02816 * 14 13 12 16 16 Si 1.86295 * 109.47320 * 0.02618 * 14 13 12 17 17 H 1.48500 * 109.47137 * 59.99760 * 16 14 13 18 18 H 1.48496 * 109.47320 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47256 * 300.00073 * 16 14 13 20 20 C 1.32763 * 110.57864 * 0.24584 * 13 12 11 21 21 C 1.46442 * 113.63929 * 79.02487 * 6 5 4 22 22 C 1.53926 * 109.45823 * 280.97731 * 21 6 5 23 23 H 1.08997 * 109.47569 * 298.62031 * 1 2 3 24 24 H 1.09007 * 109.47179 * 58.61455 * 1 2 3 25 25 H 1.08999 * 109.47487 * 178.61660 * 1 2 3 26 26 H 1.08996 * 109.47099 * 181.38648 * 3 2 1 27 27 H 1.09001 * 109.46761 * 301.38015 * 3 2 1 28 28 H 1.08997 * 109.47269 * 61.38109 * 3 2 1 29 29 H 1.08999 * 109.97596 * 43.77312 * 4 2 1 30 30 H 1.09001 * 110.05692 * 282.47813 * 4 2 1 31 31 H 1.09007 * 109.47156 * 181.99824 * 5 4 2 32 32 H 1.08994 * 109.47426 * 61.99502 * 5 4 2 33 33 H 0.96996 * 120.00063 * 300.00606 * 7 6 5 34 34 H 1.08002 * 124.58980 * 359.97099 * 11 10 8 35 35 H 1.09004 * 109.46950 * 240.02331 * 14 13 12 36 36 H 0.96696 * 113.99807 * 299.99439 * 15 14 13 37 37 H 1.08000 * 123.45779 * 179.75952 * 20 13 12 38 38 H 1.08997 * 109.47538 * 40.97196 * 21 6 5 39 39 H 1.09005 * 109.47430 * 160.98488 * 21 6 5 40 40 H 1.09002 * 109.98445 * 298.67791 * 22 21 6 41 41 H 1.09001 * 110.05861 * 177.38495 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5005 1.7506 0.0000 4 6 2.5054 -0.9177 1.5045 5 6 3.9825 -1.2499 1.2269 6 7 4.0816 -2.0464 0.0021 7 7 5.2166 -2.8065 0.0027 8 6 5.1285 -4.1493 -0.0713 9 8 4.0381 -4.6844 -0.1391 10 6 6.3514 -4.9684 -0.0700 11 6 7.6046 -4.4447 0.0027 12 16 8.7793 -5.6795 -0.0202 13 6 7.5620 -6.9388 -0.1312 14 6 7.8581 -8.4149 -0.1994 15 8 7.2492 -9.0747 0.9124 16 14 9.7011 -8.6817 -0.1465 17 1 10.2457 -8.1254 1.1180 18 1 9.9929 -10.1362 -0.2131 19 1 10.3338 -7.9961 -1.3019 20 6 6.3443 -6.4102 -0.1527 21 6 3.9826 -1.2523 -1.2244 22 6 2.5055 -0.9206 -1.5026 23 1 -0.3634 0.4922 0.9020 24 1 -0.3634 0.5352 -0.8774 25 1 -0.3634 -1.0273 -0.0248 26 1 3.5901 1.7403 -0.0249 27 1 2.1220 2.2750 -0.8774 28 1 2.1624 2.2604 0.9021 29 1 1.9380 -1.8368 1.6504 30 1 2.4256 -0.2865 2.3896 31 1 4.3907 -1.8174 2.0633 32 1 4.5464 -0.3251 1.1056 33 1 6.0860 -2.3798 0.0566 34 1 7.8254 -3.3894 0.0655 35 1 7.4583 -8.8232 -1.1276 36 1 7.5584 -8.7611 1.7733 37 1 5.4410 -6.9983 -0.2214 38 1 4.5464 -0.3272 -1.1048 39 1 4.3908 -1.8214 -2.0597 40 1 1.9380 -1.8399 -1.6469 41 1 2.4243 -0.2904 -2.3883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_22_16915442_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:04:44 Heat of formation + Delta-G solvation = -37.204908 kcal Electronic energy + Delta-G solvation = -21795.336346 eV Core-core repulsion = 18540.587822 eV Total energy + Delta-G solvation = -3254.748524 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.14314 -39.26562 -38.26195 -36.98215 -34.16915 -32.20312 -31.82534 -29.46831 -28.48608 -28.38046 -26.98250 -25.26202 -23.98240 -22.31093 -21.90754 -20.50851 -19.26430 -18.30848 -18.05048 -17.50230 -16.70331 -16.34822 -16.03184 -15.79390 -15.41400 -15.25155 -14.59672 -14.43953 -14.34980 -14.06470 -13.91002 -13.72380 -13.64570 -13.60455 -13.52483 -13.31020 -13.15998 -13.06612 -12.87369 -12.69707 -12.42064 -12.34092 -12.25435 -11.81233 -10.93960 -10.80475 -10.63826 -10.52841 -10.33741 -10.22891 -10.01970 -9.69546 -9.53250 -0.38714 0.27861 0.62537 0.92150 1.04366 1.31756 1.42811 1.61083 1.68820 1.81886 1.83840 1.89403 2.44475 2.57269 3.24208 3.33009 3.55784 3.80366 3.92222 4.10053 4.22772 4.23774 4.25941 4.35471 4.46804 4.60470 4.62595 4.66398 4.66800 4.69554 4.76495 4.78412 4.82533 4.93655 5.02669 5.21771 5.35132 5.40376 5.49337 5.54058 5.88276 6.30801 6.43545 6.43800 7.57746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.444 4.444 2 Si 0.996 3.004 3 C -0.448 4.448 4 C -0.398 4.398 5 C 0.056 3.944 6 N -0.312 5.312 7 N -0.577 5.577 8 C 0.593 3.407 9 O -0.502 6.502 10 C -0.149 4.149 11 C -0.205 4.205 12 S 0.178 5.822 13 C -0.242 4.242 14 C -0.038 4.038 15 O -0.531 6.531 16 Si 0.893 3.107 17 H -0.234 1.234 18 H -0.225 1.225 19 H -0.232 1.232 20 C -0.049 4.049 21 C 0.055 3.945 22 C -0.399 4.399 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.072 0.928 26 H 0.065 0.935 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.043 0.957 33 H 0.378 0.622 34 H 0.170 0.830 35 H 0.128 0.872 36 H 0.378 0.622 37 H 0.160 0.840 38 H 0.042 0.958 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.304 3.436 0.382 5.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.553 4.553 2 Si 1.192 2.808 3 C -0.555 4.555 4 C -0.485 4.485 5 C -0.071 4.071 6 N -0.130 5.130 7 N -0.322 5.322 8 C 0.378 3.622 9 O -0.375 6.375 10 C -0.169 4.169 11 C -0.343 4.343 12 S 0.444 5.556 13 C -0.359 4.359 14 C -0.151 4.151 15 O -0.337 6.337 16 Si 0.713 3.287 17 H -0.156 1.156 18 H -0.148 1.148 19 H -0.155 1.155 20 C -0.078 4.078 21 C -0.072 4.072 22 C -0.485 4.485 23 H 0.088 0.912 24 H 0.088 0.912 25 H 0.091 0.909 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.216 0.784 34 H 0.187 0.813 35 H 0.145 0.855 36 H 0.226 0.774 37 H 0.178 0.822 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.108 0.892 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.341 2.271 -0.061 5.804 hybrid contribution -0.641 1.551 0.355 1.715 sum 4.700 3.822 0.294 6.065 Atomic orbital electron populations 1.26025 1.20101 1.04746 1.04383 0.79609 0.67592 0.66321 0.67300 1.26128 1.06010 1.18763 1.04605 1.26251 0.99067 1.08944 1.14252 1.22232 0.98058 0.95568 0.91278 1.61478 1.22371 1.26456 1.02646 1.45046 1.04284 1.05229 1.77613 1.17399 0.88182 0.80251 0.76342 1.90819 1.28323 1.71471 1.46897 1.20225 0.92309 0.94109 1.10253 1.25708 0.97209 1.05074 1.06291 1.83227 1.08767 0.94355 1.69219 1.24789 0.96702 1.00374 1.13998 1.24378 1.10485 0.86449 0.93807 1.86559 1.68614 1.62437 1.16052 0.86286 0.74212 0.84721 0.83522 1.15644 1.14751 1.15534 1.21033 0.98206 0.91565 0.96962 1.22253 0.97958 0.95596 0.91373 1.26247 0.99131 1.08945 1.14208 0.91220 0.91226 0.90903 0.91609 0.91096 0.91098 0.89242 0.89856 0.90188 0.93874 0.78387 0.81273 0.85452 0.77438 0.82215 0.93957 0.90267 0.89227 0.89894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.44 0.37 8.65 101.05 0.87 1.24 16 2 Si 1.00 -1.99 11.76 -169.99 -2.00 -3.99 16 3 C -0.45 0.79 8.65 101.05 0.87 1.66 16 4 C -0.40 0.25 5.24 37.64 0.20 0.45 16 5 C 0.06 -0.01 5.61 -3.60 -0.02 -0.03 16 6 N -0.31 -0.44 4.00 -113.40 -0.45 -0.89 16 7 N -0.58 -0.51 4.60 30.38 0.14 -0.37 16 8 C 0.59 2.07 7.90 -12.63 -0.10 1.97 16 9 O -0.50 -3.90 17.12 5.24 0.09 -3.81 16 10 C -0.15 -0.20 5.98 -104.63 -0.63 -0.83 16 11 C -0.20 0.25 10.38 29.93 0.31 0.56 16 12 S 0.18 -0.21 20.18 -107.50 -2.17 -2.38 16 13 C -0.24 0.01 5.68 -36.18 -0.21 -0.20 16 14 C -0.04 0.03 2.95 36.01 0.11 0.14 16 15 O -0.53 0.00 12.85 -35.23 -0.45 -0.45 16 16 Si 0.89 -1.21 26.19 -169.99 -4.45 -5.66 16 17 H -0.23 0.31 7.11 56.52 0.40 0.72 16 18 H -0.23 0.05 7.11 56.52 0.40 0.45 16 19 H -0.23 0.23 7.11 56.52 0.40 0.63 16 20 C -0.05 -0.08 9.91 -39.02 -0.39 -0.46 16 21 C 0.06 0.00 5.61 -3.59 -0.02 -0.02 16 22 C -0.40 0.18 5.24 37.64 0.20 0.38 16 23 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 24 H 0.07 -0.07 7.96 -51.93 -0.41 -0.48 16 25 H 0.07 -0.01 7.96 -51.93 -0.41 -0.43 16 26 H 0.06 -0.12 7.96 -51.93 -0.41 -0.53 16 27 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 28 H 0.07 -0.12 7.96 -51.93 -0.41 -0.54 16 29 H 0.09 0.08 7.99 -51.93 -0.42 -0.34 16 30 H 0.08 -0.14 8.00 -51.93 -0.42 -0.56 16 31 H 0.08 0.03 8.04 -51.92 -0.42 -0.39 16 32 H 0.04 -0.08 7.58 -51.93 -0.39 -0.47 16 33 H 0.38 -0.83 7.33 -185.16 -1.36 -2.19 16 34 H 0.17 -0.70 7.01 -52.49 -0.37 -1.07 16 35 H 0.13 -0.22 7.96 -51.93 -0.41 -0.63 16 36 H 0.38 -1.23 8.70 45.56 0.40 -0.83 16 37 H 0.16 0.39 8.06 -52.49 -0.42 -0.04 16 38 H 0.04 -0.07 7.58 -51.93 -0.39 -0.46 16 39 H 0.08 0.07 8.04 -51.93 -0.42 -0.35 16 40 H 0.09 0.10 7.99 -51.93 -0.42 -0.31 16 41 H 0.08 -0.13 7.99 -51.93 -0.42 -0.54 16 LS Contribution 349.86 15.07 5.27 5.27 Total: 0.00 -7.23 349.86 -9.55 -16.77 By element: Atomic # 1 Polarization: -2.64 SS G_CDS: -6.72 Total: -9.36 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 1.20 Total: 4.87 kcal Atomic # 7 Polarization: -0.95 SS G_CDS: -0.31 Total: -1.27 kcal Atomic # 8 Polarization: -3.90 SS G_CDS: -0.36 Total: -4.26 kcal Atomic # 14 Polarization: -3.20 SS G_CDS: -6.45 Total: -9.65 kcal Atomic # 16 Polarization: -0.21 SS G_CDS: -2.17 Total: -2.38 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -7.23 -9.55 -16.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.431 kcal (2) G-P(sol) polarization free energy of solvation -7.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds