Wall clock time and date at job start Thu Mar 4 2021 13:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86291 * 1 3 3 C 1.86305 * 110.01314 * 2 1 4 4 C 1.87574 * 110.03188 * 121.38156 * 2 1 3 5 5 C 1.53923 * 106.83790 * 163.10285 * 4 2 1 6 6 N 1.46436 * 109.46027 * 301.99102 * 5 4 2 7 7 N 1.36602 * 111.00347 * 204.96861 * 6 5 4 8 8 C 1.34772 * 120.00247 * 119.99688 * 7 6 5 9 9 O 1.21647 * 119.99887 * 0.02562 * 8 7 6 10 10 C 1.47188 * 120.00517 * 180.02562 * 8 7 6 11 11 C 1.36011 * 123.45838 * 359.97438 * 10 8 7 12 12 S 1.70447 * 110.81832 * 180.02562 * 11 10 8 13 13 C 1.75507 * 92.44198 * 0.02562 * 12 11 10 14 14 C 1.50706 * 124.70724 * 179.97438 * 13 12 11 15 15 O 1.42903 * 109.46818 * 120.02816 * 14 13 12 16 16 Si 1.86295 * 109.47320 * 0.02618 * 14 13 12 17 17 H 1.48500 * 109.47137 * 59.99760 * 16 14 13 18 18 H 1.48496 * 109.47320 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47256 * 300.00073 * 16 14 13 20 20 C 1.32763 * 110.57864 * 0.24584 * 13 12 11 21 21 C 1.46442 * 113.63929 * 79.02487 * 6 5 4 22 22 C 1.53926 * 109.45823 * 280.97731 * 21 6 5 23 23 H 1.08997 * 109.47569 * 298.62031 * 1 2 3 24 24 H 1.09007 * 109.47179 * 58.61455 * 1 2 3 25 25 H 1.08999 * 109.47487 * 178.61660 * 1 2 3 26 26 H 1.08996 * 109.47099 * 181.38648 * 3 2 1 27 27 H 1.09001 * 109.46761 * 301.38015 * 3 2 1 28 28 H 1.08997 * 109.47269 * 61.38109 * 3 2 1 29 29 H 1.08999 * 109.97596 * 43.77312 * 4 2 1 30 30 H 1.09001 * 110.05692 * 282.47813 * 4 2 1 31 31 H 1.09007 * 109.47156 * 181.99824 * 5 4 2 32 32 H 1.08994 * 109.47426 * 61.99502 * 5 4 2 33 33 H 0.96996 * 120.00063 * 300.00606 * 7 6 5 34 34 H 1.08002 * 124.58980 * 359.97099 * 11 10 8 35 35 H 1.09004 * 109.46950 * 240.02331 * 14 13 12 36 36 H 0.96696 * 113.99807 * 299.99439 * 15 14 13 37 37 H 1.08000 * 123.45779 * 179.75952 * 20 13 12 38 38 H 1.08997 * 109.47538 * 40.97196 * 21 6 5 39 39 H 1.09005 * 109.47430 * 160.98488 * 21 6 5 40 40 H 1.09002 * 109.98445 * 298.67791 * 22 21 6 41 41 H 1.09001 * 110.05861 * 177.38495 * 22 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5005 1.7506 0.0000 4 6 2.5054 -0.9177 1.5045 5 6 3.9825 -1.2499 1.2269 6 7 4.0816 -2.0464 0.0021 7 7 5.2166 -2.8065 0.0027 8 6 5.1285 -4.1493 -0.0713 9 8 4.0381 -4.6844 -0.1391 10 6 6.3514 -4.9684 -0.0700 11 6 7.6046 -4.4447 0.0027 12 16 8.7793 -5.6795 -0.0202 13 6 7.5620 -6.9388 -0.1312 14 6 7.8581 -8.4149 -0.1994 15 8 7.2492 -9.0747 0.9124 16 14 9.7011 -8.6817 -0.1465 17 1 10.2457 -8.1254 1.1180 18 1 9.9929 -10.1362 -0.2131 19 1 10.3338 -7.9961 -1.3019 20 6 6.3443 -6.4102 -0.1527 21 6 3.9826 -1.2523 -1.2244 22 6 2.5055 -0.9206 -1.5026 23 1 -0.3634 0.4922 0.9020 24 1 -0.3634 0.5352 -0.8774 25 1 -0.3634 -1.0273 -0.0248 26 1 3.5901 1.7403 -0.0249 27 1 2.1220 2.2750 -0.8774 28 1 2.1624 2.2604 0.9021 29 1 1.9380 -1.8368 1.6504 30 1 2.4256 -0.2865 2.3896 31 1 4.3907 -1.8174 2.0633 32 1 4.5464 -0.3251 1.1056 33 1 6.0860 -2.3798 0.0566 34 1 7.8254 -3.3894 0.0655 35 1 7.4583 -8.8232 -1.1276 36 1 7.5584 -8.7611 1.7733 37 1 5.4410 -6.9983 -0.2214 38 1 4.5464 -0.3272 -1.1048 39 1 4.3908 -1.8214 -2.0597 40 1 1.9380 -1.8399 -1.6469 41 1 2.4243 -0.2904 -2.3883 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_6894386.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:04:43 Heat of formation + Delta-G solvation = -33.747568 kcal Electronic energy + Delta-G solvation = -21795.186425 eV Core-core repulsion = 18540.587822 eV Total energy + Delta-G solvation = -3254.598602 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 314.103 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28669 -39.27982 -38.35980 -37.05588 -34.27779 -32.15954 -31.81923 -29.39363 -28.39994 -28.33658 -26.96605 -25.30689 -23.95187 -22.30794 -21.99542 -20.59078 -19.26201 -18.31500 -18.13856 -17.49815 -16.76322 -16.30069 -16.09292 -15.74807 -15.45070 -15.41365 -14.63099 -14.37703 -14.26427 -13.97472 -13.89673 -13.66673 -13.63592 -13.58608 -13.54280 -13.19810 -13.06780 -13.00841 -12.82881 -12.66252 -12.34742 -12.30683 -12.18411 -11.81099 -11.07519 -10.78644 -10.58720 -10.47550 -10.43845 -10.23275 -10.00163 -9.68543 -9.50278 -0.37869 0.32595 0.63756 0.82474 1.10704 1.42716 1.50672 1.57781 1.79227 1.90475 1.94643 2.06903 2.27334 2.66271 3.25750 3.41411 3.66527 3.83035 3.95293 4.16689 4.24251 4.26310 4.29467 4.37341 4.55330 4.65264 4.65561 4.68847 4.80822 4.81653 4.83671 4.85745 4.88772 4.99074 4.99680 5.14539 5.42647 5.43704 5.58459 5.65644 5.91645 6.18970 6.36865 6.63817 7.47230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 Si 1.064 2.936 3 C -0.449 4.449 4 C -0.413 4.413 5 C 0.054 3.946 6 N -0.339 5.339 7 N -0.564 5.564 8 C 0.591 3.409 9 O -0.561 6.561 10 C -0.175 4.175 11 C -0.186 4.186 12 S 0.219 5.781 13 C -0.244 4.244 14 C -0.044 4.044 15 O -0.550 6.550 16 Si 0.923 3.077 17 H -0.228 1.228 18 H -0.243 1.243 19 H -0.232 1.232 20 C -0.070 4.070 21 C 0.054 3.946 22 C -0.415 4.415 23 H 0.072 0.928 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.396 0.604 34 H 0.203 0.797 35 H 0.129 0.871 36 H 0.391 0.609 37 H 0.138 0.862 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.318 5.414 0.616 8.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.569 4.569 2 Si 1.255 2.745 3 C -0.557 4.557 4 C -0.498 4.498 5 C -0.073 4.073 6 N -0.158 5.158 7 N -0.309 5.309 8 C 0.378 3.622 9 O -0.438 6.438 10 C -0.194 4.194 11 C -0.324 4.324 12 S 0.485 5.515 13 C -0.360 4.360 14 C -0.157 4.157 15 O -0.357 6.357 16 Si 0.743 3.257 17 H -0.150 1.150 18 H -0.166 1.166 19 H -0.155 1.155 20 C -0.099 4.099 21 C -0.073 4.073 22 C -0.500 4.500 23 H 0.091 0.909 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.091 0.909 27 H 0.092 0.908 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.115 0.885 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.237 0.763 34 H 0.219 0.781 35 H 0.147 0.853 36 H 0.240 0.760 37 H 0.156 0.844 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.372 4.268 0.183 8.521 hybrid contribution -1.238 0.905 0.285 1.560 sum 6.134 5.174 0.468 8.038 Atomic orbital electron populations 1.26251 1.21946 1.04063 1.04660 0.78613 0.65553 0.65585 0.64738 1.26121 1.06521 1.18099 1.04964 1.26462 0.98856 1.08422 1.16102 1.22285 0.98528 0.96226 0.90247 1.61425 1.23290 1.27369 1.03721 1.44858 1.05127 1.04597 1.76270 1.17793 0.88116 0.81030 0.75283 1.90780 1.30413 1.72622 1.50023 1.20037 0.92484 0.93770 1.13132 1.26054 0.96084 1.06862 1.03394 1.83109 1.07347 0.93131 1.67894 1.24913 0.96723 1.01247 1.13143 1.24579 1.11381 0.85942 0.93753 1.86523 1.69257 1.62852 1.17047 0.85872 0.72864 0.83435 0.83578 1.15042 1.16642 1.15515 1.20962 0.98223 0.92054 0.98662 1.22287 0.98430 0.96205 0.90362 1.26481 0.98904 1.08389 1.16197 0.90911 0.90968 0.92103 0.90873 0.90809 0.90711 0.91523 0.88498 0.91136 0.91327 0.76282 0.78053 0.85316 0.76007 0.84395 0.91416 0.91611 0.91640 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.47 8.65 113.37 0.98 1.45 16 2 Si 1.06 -4.46 11.76 68.60 0.81 -3.65 16 3 C -0.45 2.46 8.65 113.37 0.98 3.45 16 4 C -0.41 0.35 5.24 72.29 0.38 0.73 16 5 C 0.05 -0.02 5.61 86.70 0.49 0.46 16 6 N -0.34 -1.22 4.00 -512.70 -2.05 -3.27 16 7 N -0.56 -1.32 4.60 -176.04 -0.81 -2.13 16 8 C 0.59 5.30 7.90 86.59 0.68 5.98 16 9 O -0.56 -10.76 17.12 -4.18 -0.07 -10.84 16 10 C -0.17 -0.66 5.98 -19.87 -0.12 -0.78 16 11 C -0.19 0.66 10.38 67.30 0.70 1.36 16 12 S 0.22 -0.82 20.18 -56.49 -1.14 -1.96 16 13 C -0.24 -0.12 5.68 24.51 0.14 0.02 16 14 C -0.04 0.05 2.95 71.24 0.21 0.26 16 15 O -0.55 -0.58 12.85 -148.98 -1.91 -2.50 16 16 Si 0.92 -2.91 26.19 68.60 1.80 -1.12 16 17 H -0.23 0.94 7.11 99.48 0.71 1.64 16 18 H -0.24 0.05 7.11 99.48 0.71 0.75 16 19 H -0.23 0.74 7.11 99.48 0.71 1.44 16 20 C -0.07 -0.37 9.91 22.67 0.22 -0.14 16 21 C 0.05 0.02 5.61 86.70 0.49 0.50 16 22 C -0.41 0.09 5.24 72.29 0.38 0.47 16 23 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 24 H 0.07 -0.12 7.96 -2.38 -0.02 -0.14 16 25 H 0.06 0.08 7.96 -2.39 -0.02 0.07 16 26 H 0.07 -0.47 7.96 -2.39 -0.02 -0.49 16 27 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 28 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 29 H 0.07 0.26 7.99 -2.39 -0.02 0.24 16 30 H 0.10 -0.38 8.00 -2.39 -0.02 -0.40 16 31 H 0.07 0.09 8.04 -2.38 -0.02 0.07 16 32 H 0.07 -0.39 7.58 -2.39 -0.02 -0.41 16 33 H 0.40 -2.11 7.33 -215.50 -1.58 -3.69 16 34 H 0.20 -2.22 7.01 -2.91 -0.02 -2.24 16 35 H 0.13 -0.27 7.96 -2.39 -0.02 -0.29 16 36 H 0.39 -2.25 8.70 -74.06 -0.64 -2.89 16 37 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 38 H 0.07 -0.34 7.58 -2.39 -0.02 -0.36 16 39 H 0.07 0.18 8.04 -2.38 -0.02 0.16 16 40 H 0.06 0.31 7.99 -2.39 -0.02 0.29 16 41 H 0.09 -0.29 7.99 -2.39 -0.02 -0.31 16 Total: 0.00 -19.76 349.86 1.71 -18.05 By element: Atomic # 1 Polarization: -5.92 SS G_CDS: -0.43 Total: -6.35 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.53 Total: 13.76 kcal Atomic # 7 Polarization: -2.54 SS G_CDS: -2.86 Total: -5.40 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: -1.99 Total: -13.33 kcal Atomic # 14 Polarization: -7.37 SS G_CDS: 2.60 Total: -4.77 kcal Atomic # 16 Polarization: -0.82 SS G_CDS: -1.14 Total: -1.96 kcal Total: -19.76 1.71 -18.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_6894386.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.699 kcal (2) G-P(sol) polarization free energy of solvation -19.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds