Wall clock time and date at job start Thu Mar 4 2021 13:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38336 * 119.85482 * 2 1 4 4 C 1.37981 * 120.14569 * 179.76790 * 3 2 1 5 5 C 1.50698 * 120.07572 * 180.23795 * 4 3 2 6 6 C 1.39554 * 119.85333 * 0.50780 * 4 3 2 7 7 C 1.47849 * 120.14624 * 179.72591 * 6 4 3 8 8 O 1.21548 * 119.99964 * 353.77116 * 7 6 4 9 9 N 1.34780 * 119.99523 * 173.77470 * 7 6 4 10 10 N 1.36608 * 119.99277 * 180.02562 * 9 7 6 11 11 C 1.46443 * 110.99345 * 247.39971 * 10 9 7 12 12 C 1.53927 * 109.45865 * 155.03380 * 11 10 9 13 13 Si 1.87569 * 106.83623 * 58.00440 * 12 11 10 14 14 C 1.86307 * 110.03128 * 196.89846 * 13 12 11 15 15 C 1.86302 * 110.11723 * 75.47081 * 13 12 11 16 16 C 1.87572 * 106.56901 * 316.16232 * 13 12 11 17 17 C 1.46439 * 111.00174 * 119.99635 * 10 9 7 18 18 C 1.39602 * 119.70828 * 359.75152 * 6 4 3 19 19 C 1.37931 * 119.85232 * 359.97438 * 18 6 4 20 20 C 1.50710 * 119.92661 * 180.02562 * 19 18 6 21 21 O 1.42903 * 109.46934 * 254.98138 * 20 19 18 22 22 Si 1.86304 * 109.46874 * 14.98020 * 20 19 18 23 23 H 1.48493 * 109.47030 * 60.00019 * 22 20 19 24 24 H 1.48494 * 109.46813 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.47133 * 299.99989 * 22 20 19 26 26 H 1.08997 * 109.47288 * 269.72644 * 1 2 3 27 27 H 1.09008 * 109.46996 * 29.71985 * 1 2 3 28 28 H 1.09003 * 109.47532 * 149.71901 * 1 2 3 29 29 H 1.08000 * 119.92803 * 0.02562 * 3 2 1 30 30 H 1.09002 * 109.47371 * 263.68155 * 5 4 3 31 31 H 1.09000 * 109.47342 * 23.68354 * 5 4 3 32 32 H 1.09000 * 109.47231 * 143.67777 * 5 4 3 33 33 H 0.96991 * 120.00576 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.47000 * 275.02860 * 11 10 9 35 35 H 1.09000 * 109.47466 * 35.03566 * 11 10 9 36 36 H 1.08997 * 109.97611 * 298.67833 * 12 11 10 37 37 H 1.08994 * 110.05627 * 177.38174 * 12 11 10 38 38 H 1.08995 * 109.46915 * 177.12564 * 14 13 12 39 39 H 1.09000 * 109.46791 * 297.12557 * 14 13 12 40 40 H 1.08997 * 109.46931 * 57.12732 * 14 13 12 41 41 H 1.08998 * 109.47110 * 302.82489 * 15 13 12 42 42 H 1.08999 * 109.47008 * 62.82155 * 15 13 12 43 43 H 1.08995 * 109.47211 * 182.82265 * 15 13 12 44 44 H 1.09007 * 109.97401 * 284.50829 * 16 13 12 45 45 H 1.08996 * 110.05520 * 163.21962 * 16 13 12 46 46 H 1.09003 * 109.47283 * 324.96216 * 17 10 9 47 47 H 1.09003 * 109.47345 * 84.96520 * 17 10 9 48 48 H 1.07998 * 120.07151 * 179.97438 * 18 6 4 49 49 H 1.08998 * 109.47010 * 134.97931 * 20 19 18 50 50 H 0.96702 * 114.00040 * 60.00178 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1956 1.1998 0.0000 4 6 3.5754 1.2068 0.0048 5 6 4.3239 2.5147 0.0102 6 6 4.2762 0.0000 -0.0010 7 6 5.7547 0.0000 -0.0020 8 8 6.3623 1.0469 -0.1120 9 7 6.4286 -1.1610 0.1190 10 7 7.7946 -1.1609 0.1186 11 6 8.3190 -1.8144 -1.0824 12 6 9.7310 -1.2798 -1.3822 13 14 10.7767 -1.6264 0.1359 14 6 12.3247 -0.5905 0.0946 15 6 11.2211 -3.4341 0.2088 16 6 9.7319 -1.1612 1.6227 17 6 8.3199 -1.7177 1.3670 18 6 3.5751 -1.2072 -0.0064 19 6 2.1958 -1.2001 -0.0055 20 6 1.4373 -2.5024 -0.0108 21 8 0.8950 -2.7324 -1.3127 22 14 2.5912 -3.8950 0.4363 23 1 3.1548 -3.6559 1.7892 24 1 1.8440 -5.1782 0.4305 25 1 3.6949 -3.9609 -0.5551 26 1 -0.3634 -0.0049 1.0276 27 1 -0.3633 0.8926 -0.5095 28 1 -0.3634 -0.8875 -0.5182 29 1 1.6520 2.1330 0.0004 30 1 4.6062 2.7761 -1.0096 31 1 3.6862 3.2967 0.4225 32 1 5.2209 2.4175 0.6219 33 1 5.9437 -1.9963 0.2071 34 1 8.3652 -2.8912 -0.9193 35 1 7.6633 -1.6026 -1.9270 36 1 9.6908 -0.2068 -1.5696 37 1 10.1492 -1.7934 -2.2477 38 1 12.9002 -0.7609 1.0044 39 1 12.9245 -0.8681 -0.7722 40 1 12.0549 0.4634 0.0273 41 1 10.3101 -4.0325 0.2079 42 1 11.8276 -3.6944 -0.6586 43 1 11.7855 -3.6331 1.1198 44 1 9.6920 -0.0767 1.7251 45 1 10.1493 -1.6051 2.5264 46 1 7.6648 -1.4400 2.1927 47 1 8.3660 -2.8040 1.2893 48 1 4.1115 -2.1445 -0.0114 49 1 0.6272 -2.4539 0.7169 50 1 1.5606 -2.7871 -2.0120 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_9599494.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:05:09 Heat of formation + Delta-G solvation = -40.033857 kcal Electronic energy + Delta-G solvation = -27909.602666 eV Core-core repulsion = 24254.503985 eV Total energy + Delta-G solvation = -3655.098681 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 336.178 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.78484 -40.42101 -38.72636 -37.53424 -34.67902 -34.35639 -33.09395 -32.18044 -29.86162 -29.17608 -28.73922 -28.36325 -27.60309 -25.55938 -23.96890 -23.73502 -22.82521 -21.91879 -21.03478 -19.27181 -18.51718 -17.57021 -17.02215 -16.80889 -16.45989 -16.34676 -15.94554 -15.72787 -15.46392 -15.21356 -14.71428 -14.58567 -14.40810 -14.23630 -13.99253 -13.89190 -13.88550 -13.63802 -13.58365 -13.37125 -13.20725 -13.07179 -13.06360 -13.02661 -12.84836 -12.75692 -12.70866 -12.56405 -12.32171 -12.18850 -11.95398 -11.75902 -10.85840 -10.72894 -10.48204 -10.43147 -10.40440 -10.24556 -9.92514 -9.72126 -9.64001 -0.27570 0.14082 1.12078 1.35807 1.47070 1.52026 1.74492 1.78098 1.87772 1.94048 2.04848 2.62581 2.64886 3.19638 3.44588 3.49603 3.55465 3.69792 3.82059 4.11411 4.14170 4.21115 4.24124 4.26142 4.35595 4.48956 4.56763 4.58203 4.62923 4.63437 4.69164 4.77744 4.79857 4.81548 4.82854 4.83648 4.84147 4.86946 4.90103 4.98038 5.03771 5.18141 5.30375 5.40323 5.42551 5.45994 5.49655 5.58099 5.64072 5.79420 5.88556 6.18373 6.31638 6.68500 7.42651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.024 4.024 3 C -0.134 4.134 4 C -0.022 4.022 5 C -0.119 4.119 6 C -0.155 4.155 7 C 0.571 3.429 8 O -0.538 6.538 9 N -0.572 5.572 10 N -0.333 5.333 11 C 0.051 3.949 12 C -0.412 4.412 13 Si 1.062 2.938 14 C -0.460 4.460 15 C -0.451 4.451 16 C -0.411 4.411 17 C 0.050 3.950 18 C -0.083 4.083 19 C -0.137 4.137 20 C -0.073 4.073 21 O -0.546 6.546 22 Si 0.960 3.040 23 H -0.254 1.254 24 H -0.269 1.269 25 H -0.243 1.243 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.149 0.851 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.388 0.612 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.096 0.904 46 H 0.070 0.930 47 H 0.066 0.934 48 H 0.136 0.864 49 H 0.128 0.872 50 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 -4.562 0.675 4.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.024 4.024 3 C -0.152 4.152 4 C -0.023 4.023 5 C -0.175 4.175 6 C -0.159 4.159 7 C 0.361 3.639 8 O -0.415 6.415 9 N -0.317 5.317 10 N -0.152 5.152 11 C -0.075 4.075 12 C -0.497 4.497 13 Si 1.253 2.747 14 C -0.567 4.567 15 C -0.559 4.559 16 C -0.496 4.496 17 C -0.076 4.076 18 C -0.102 4.102 19 C -0.138 4.138 20 C -0.184 4.184 21 O -0.353 6.353 22 Si 0.784 3.216 23 H -0.178 1.178 24 H -0.194 1.194 25 H -0.167 1.167 26 H 0.105 0.895 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.166 0.834 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.229 0.771 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.088 0.912 45 H 0.114 0.886 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.153 0.847 49 H 0.146 0.854 50 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -0.553 -4.033 1.123 4.223 hybrid contribution -0.085 -0.535 -0.345 0.642 sum -0.638 -4.567 0.778 4.677 Atomic orbital electron populations 1.21035 0.89152 1.04486 1.03677 1.20246 0.97559 0.91753 0.92889 1.21233 0.92547 0.99151 1.02281 1.20188 0.94114 0.94642 0.93388 1.21027 1.00440 0.92982 1.03059 1.19558 0.91380 0.94625 1.10377 1.18383 0.86882 0.82935 0.75749 1.90713 1.70413 1.31415 1.48941 1.45084 1.01422 1.09030 1.76177 1.61496 0.91080 1.58882 1.03725 1.22316 0.97275 0.96984 0.90963 1.26456 1.02615 1.04377 1.16271 0.78640 0.64806 0.66400 0.64817 1.26223 1.16385 1.09452 1.04670 1.26145 1.05580 1.19167 1.04986 1.26447 1.02524 1.04788 1.15876 1.22319 0.97366 0.98042 0.89885 1.21274 0.94221 0.96881 0.97793 1.20188 0.92870 0.96531 1.04171 1.24933 1.05170 0.98634 0.89651 1.86493 1.37948 1.94474 1.16388 0.85555 0.78027 0.77086 0.80950 1.17776 1.19375 1.16674 0.89479 0.90447 0.89751 0.83356 0.91213 0.90502 0.90602 0.77104 0.91741 0.91494 0.91322 0.88707 0.90925 0.90960 0.91942 0.91052 0.90792 0.90732 0.91215 0.88564 0.91152 0.91634 0.84689 0.85421 0.76252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.44 9.32 71.23 0.66 1.10 16 2 C -0.02 0.00 5.89 -19.81 -0.12 -0.11 16 3 C -0.13 -0.18 9.31 22.23 0.21 0.03 16 4 C -0.02 -0.11 5.91 -19.61 -0.12 -0.23 16 5 C -0.12 -0.71 8.73 71.24 0.62 -0.09 16 6 C -0.15 -0.79 5.87 -20.09 -0.12 -0.91 16 7 C 0.57 4.97 7.81 86.79 0.68 5.64 16 8 O -0.54 -8.47 13.67 -3.87 -0.05 -8.53 16 9 N -0.57 -2.13 4.58 -175.60 -0.80 -2.94 16 10 N -0.33 -1.29 4.00 -512.69 -2.05 -3.34 16 11 C 0.05 0.03 5.61 86.70 0.49 0.52 16 12 C -0.41 0.21 5.24 72.30 0.38 0.59 16 13 Si 1.06 -4.54 11.76 68.60 0.81 -3.73 16 14 C -0.46 0.67 8.65 113.37 0.98 1.66 16 15 C -0.45 2.30 8.65 113.37 0.98 3.29 16 16 C -0.41 0.39 5.24 72.29 0.38 0.77 16 17 C 0.05 0.01 5.61 86.70 0.49 0.50 16 18 C -0.08 -0.02 8.13 22.53 0.18 0.16 16 19 C -0.14 0.11 5.26 -19.90 -0.10 0.01 16 20 C -0.07 0.27 1.88 71.24 0.13 0.40 16 21 O -0.55 1.49 11.91 -148.98 -1.77 -0.28 16 22 Si 0.96 -3.74 25.49 68.60 1.75 -1.99 16 23 H -0.25 0.66 7.11 99.48 0.71 1.37 16 24 H -0.27 0.07 7.11 99.48 0.71 0.78 16 25 H -0.24 1.36 6.73 99.48 0.67 2.02 16 26 H 0.09 -0.47 8.14 -2.39 -0.02 -0.49 16 27 H 0.08 -0.35 8.08 -2.38 -0.02 -0.37 16 28 H 0.08 -0.21 6.18 -2.39 -0.01 -0.22 16 29 H 0.15 -0.35 8.06 -2.91 -0.02 -0.37 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.08 0.14 8.04 -2.39 -0.02 0.12 16 32 H 0.08 0.81 5.86 -2.39 -0.01 0.80 16 33 H 0.39 -0.72 6.90 -215.50 -1.49 -2.21 16 34 H 0.06 -0.26 7.58 -2.39 -0.02 -0.28 16 35 H 0.07 0.19 8.04 -2.39 -0.02 0.17 16 36 H 0.07 0.26 7.99 -2.39 -0.02 0.24 16 37 H 0.09 -0.31 7.99 -2.39 -0.02 -0.33 16 38 H 0.07 -0.15 7.96 -2.39 -0.02 -0.17 16 39 H 0.07 -0.14 7.96 -2.39 -0.02 -0.16 16 40 H 0.06 0.04 7.96 -2.39 -0.02 0.02 16 41 H 0.07 -0.41 7.96 -2.39 -0.02 -0.43 16 42 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 43 H 0.07 -0.39 7.96 -2.39 -0.02 -0.41 16 44 H 0.07 0.22 7.99 -2.38 -0.02 0.20 16 45 H 0.10 -0.37 8.00 -2.39 -0.02 -0.39 16 46 H 0.07 0.14 8.04 -2.39 -0.02 0.12 16 47 H 0.07 -0.29 7.58 -2.39 -0.02 -0.31 16 48 H 0.14 -0.51 3.28 -2.91 -0.01 -0.52 16 49 H 0.13 -0.69 7.38 -2.39 -0.02 -0.71 16 50 H 0.39 -3.28 8.70 -74.06 -0.64 -3.93 16 Total: 0.00 -15.98 389.20 3.12 -12.85 By element: Atomic # 1 Polarization: -4.89 SS G_CDS: -0.47 Total: -5.36 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 5.72 Total: 13.30 kcal Atomic # 7 Polarization: -3.42 SS G_CDS: -2.86 Total: -6.27 kcal Atomic # 8 Polarization: -6.98 SS G_CDS: -1.83 Total: -8.81 kcal Atomic # 14 Polarization: -8.28 SS G_CDS: 2.56 Total: -5.72 kcal Total: -15.98 3.12 -12.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_9599494.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.181 kcal (2) G-P(sol) polarization free energy of solvation -15.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds