Wall clock time and date at job start Thu Mar 4 2021 13:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86294 * 1 3 3 C 1.86295 * 110.01159 * 2 1 4 4 C 1.87572 * 110.03079 * 121.38588 * 2 1 3 5 5 C 1.53926 * 106.83651 * 163.10257 * 4 2 1 6 6 N 1.46438 * 109.46160 * 301.99138 * 5 4 2 7 7 N 1.36598 * 111.00025 * 204.97158 * 6 5 4 8 8 C 1.34775 * 120.00058 * 120.00359 * 7 6 5 9 9 O 1.21281 * 120.00140 * 359.97438 * 8 7 6 10 10 C 1.50702 * 119.99997 * 179.97438 * 8 7 6 11 11 N 1.46495 * 109.47463 * 179.97438 * 10 8 7 12 12 C 1.36837 * 125.05897 * 265.02477 * 11 10 8 13 13 C 1.34236 * 109.93711 * 179.72930 * 12 11 10 14 14 C 1.50705 * 126.50150 * 180.29861 * 13 12 11 15 15 O 1.42899 * 109.46737 * 104.97623 * 14 13 12 16 16 Si 1.86295 * 109.47157 * 344.97864 * 14 13 12 17 17 H 1.48504 * 109.47280 * 59.99673 * 16 14 13 18 18 H 1.48500 * 109.47102 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.46967 * 299.99941 * 16 14 13 20 20 C 1.46497 * 106.99807 * 0.26679 * 13 12 11 21 21 C 1.39587 * 134.03357 * 180.02562 * 20 13 12 22 22 C 1.36667 * 119.76286 * 179.97438 * 21 20 13 23 23 C 1.38784 * 120.52601 * 359.97438 * 22 21 20 24 24 C 1.37788 * 120.66934 * 0.02562 * 23 22 21 25 25 C 1.37689 * 125.06685 * 85.22186 * 11 10 8 26 26 C 1.46439 * 113.64022 * 79.02250 * 6 5 4 27 27 C 1.53933 * 109.45638 * 280.97915 * 26 6 5 28 28 H 1.09010 * 109.47263 * 298.61337 * 1 2 3 29 29 H 1.09004 * 109.47601 * 58.61448 * 1 2 3 30 30 H 1.08998 * 109.47179 * 178.61902 * 1 2 3 31 31 H 1.08999 * 109.47447 * 181.38454 * 3 2 1 32 32 H 1.08997 * 109.47278 * 301.38828 * 3 2 1 33 33 H 1.09005 * 109.47265 * 61.38352 * 3 2 1 34 34 H 1.08995 * 109.97957 * 43.77214 * 4 2 1 35 35 H 1.09006 * 110.05390 * 282.47478 * 4 2 1 36 36 H 1.09005 * 109.47589 * 181.99558 * 5 4 2 37 37 H 1.09007 * 109.47788 * 61.99289 * 5 4 2 38 38 H 0.97005 * 120.00112 * 299.99832 * 7 6 5 39 39 H 1.09004 * 109.47143 * 59.99331 * 10 8 7 40 40 H 1.09004 * 109.46943 * 299.99826 * 10 8 7 41 41 H 1.08002 * 125.03543 * 359.97438 * 12 11 10 42 42 H 1.09000 * 109.46798 * 224.97491 * 14 13 12 43 43 H 0.96696 * 114.00746 * 300.00157 * 15 14 13 44 44 H 1.08000 * 120.12164 * 359.97438 * 21 20 13 45 45 H 1.07999 * 119.73454 * 180.02562 * 22 21 20 46 46 H 1.08005 * 119.66508 * 179.97438 * 23 22 21 47 47 H 1.08000 * 120.11355 * 180.02562 * 24 23 22 48 48 H 1.08997 * 109.47688 * 40.97470 * 26 6 5 49 49 H 1.08998 * 109.47232 * 160.98765 * 26 6 5 50 50 H 1.09004 * 109.97687 * 298.67424 * 27 26 6 51 51 H 1.09002 * 109.97736 * 177.33702 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.5005 1.7505 0.0000 4 6 2.5054 -0.9178 1.5044 5 6 3.9825 -1.2500 1.2268 6 7 4.0816 -2.0464 0.0019 7 7 5.2166 -2.8065 0.0026 8 6 5.1284 -4.1493 -0.0716 9 8 4.0413 -4.6829 -0.1386 10 6 6.3806 -4.9878 -0.0714 11 7 6.0195 -6.4049 -0.1587 12 6 5.8804 -7.2478 0.9102 13 6 5.5382 -8.4741 0.4846 14 6 5.2845 -9.6839 1.3467 15 8 3.8791 -9.9324 1.4170 16 14 5.9470 -9.3751 3.0603 17 1 5.2645 -8.1953 3.6498 18 1 5.6965 -10.5670 3.9100 19 1 7.4075 -9.1168 2.9873 20 6 5.4571 -8.4130 -0.9769 21 6 5.1524 -9.3439 -1.9714 22 6 5.1629 -8.9625 -3.2838 23 6 5.4737 -7.6565 -3.6359 24 6 5.7775 -6.7216 -2.6704 25 6 5.7732 -7.0879 -1.3286 26 6 3.9826 -1.2522 -1.2245 27 6 2.5054 -0.9205 -1.5027 28 1 -0.3634 0.4922 0.9022 29 1 -0.3634 0.5352 -0.8773 30 1 -0.3633 -1.0273 -0.0248 31 1 3.5901 1.7404 -0.0248 32 1 2.1219 2.2750 -0.8772 33 1 2.1623 2.2603 0.9022 34 1 1.9380 -1.8369 1.6503 35 1 2.4256 -0.2866 2.3896 36 1 4.3908 -1.8175 2.0631 37 1 4.5465 -0.3251 1.1055 38 1 6.0861 -2.3798 0.0564 39 1 6.9363 -4.8108 0.8495 40 1 6.9994 -4.7168 -0.9269 41 1 6.0211 -6.9672 1.9436 42 1 5.7855 -10.5498 0.9140 43 1 3.3687 -9.2022 1.7929 44 1 4.9092 -10.3618 -1.7049 45 1 4.9267 -9.6830 -4.0528 46 1 5.4783 -7.3704 -4.6773 47 1 6.0176 -5.7077 -2.9544 48 1 4.5464 -0.3271 -1.1049 49 1 4.3907 -1.8212 -2.0598 50 1 1.9380 -1.8400 -1.6470 51 1 2.4257 -0.2896 -2.3880 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_9818708.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:05:19 Heat of formation + Delta-G solvation = 6.167664 kcal Electronic energy + Delta-G solvation = -30651.025262 eV Core-core repulsion = 26676.051837 eV Total energy + Delta-G solvation = -3974.973424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 361.173 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.53716 -40.98858 -38.75635 -38.06050 -37.52676 -34.41227 -33.85443 -32.16772 -31.49877 -30.24642 -29.74769 -29.04470 -28.37748 -27.73495 -25.60856 -23.96394 -23.76651 -22.81823 -22.10363 -21.71322 -20.67087 -19.04081 -18.44044 -18.23129 -17.66552 -17.18549 -16.74181 -16.46211 -16.17002 -15.90490 -15.76446 -15.51667 -15.39541 -14.84083 -14.71304 -14.52191 -14.45068 -14.28142 -14.00101 -13.85212 -13.68472 -13.62614 -13.57378 -13.28938 -13.18662 -13.09200 -12.99210 -12.84586 -12.69939 -12.55611 -12.32915 -12.31929 -12.14339 -11.89815 -11.67585 -11.17470 -10.81835 -10.56844 -10.48410 -10.40498 -10.26835 -10.24260 -9.67158 -9.15889 -8.63024 0.14209 0.63348 1.22629 1.27070 1.49467 1.50407 1.56856 1.67366 1.77703 1.89578 1.91886 1.96180 2.04753 2.64035 2.95170 3.23927 3.56385 3.65562 3.66675 3.74009 3.82851 4.04492 4.11590 4.16464 4.22699 4.26257 4.30227 4.31183 4.36261 4.52286 4.60893 4.64249 4.65496 4.72703 4.77753 4.77966 4.79674 4.81528 4.83576 4.86924 4.90944 4.97810 5.14966 5.39937 5.41338 5.51550 5.55225 5.63400 5.67254 5.74345 5.75854 5.90894 6.14695 6.21898 6.23855 6.41776 6.76091 7.48319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.465 4.465 2 Si 1.061 2.939 3 C -0.449 4.449 4 C -0.412 4.412 5 C 0.055 3.945 6 N -0.341 5.341 7 N -0.566 5.566 8 C 0.505 3.495 9 O -0.549 6.549 10 C 0.094 3.906 11 N -0.467 5.467 12 C 0.063 3.937 13 C -0.216 4.216 14 C -0.053 4.053 15 O -0.560 6.560 16 Si 0.993 3.007 17 H -0.248 1.248 18 H -0.273 1.273 19 H -0.248 1.248 20 C -0.114 4.114 21 C -0.085 4.085 22 C -0.154 4.154 23 C -0.107 4.107 24 C -0.135 4.135 25 C 0.091 3.909 26 C 0.056 3.944 27 C -0.415 4.415 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.058 0.942 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.402 0.598 39 H 0.164 0.836 40 H 0.146 0.854 41 H 0.192 0.808 42 H 0.110 0.890 43 H 0.384 0.616 44 H 0.123 0.877 45 H 0.138 0.862 46 H 0.145 0.855 47 H 0.131 0.869 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.062 0.938 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.979 8.012 1.549 10.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.253 2.747 3 C -0.557 4.557 4 C -0.497 4.497 5 C -0.071 4.071 6 N -0.160 5.160 7 N -0.312 5.312 8 C 0.290 3.710 9 O -0.423 6.423 10 C -0.032 4.032 11 N -0.149 5.149 12 C -0.063 4.063 13 C -0.224 4.224 14 C -0.163 4.163 15 O -0.367 6.367 16 Si 0.815 3.185 17 H -0.171 1.171 18 H -0.198 1.198 19 H -0.172 1.172 20 C -0.118 4.118 21 C -0.104 4.104 22 C -0.173 4.173 23 C -0.126 4.126 24 C -0.156 4.156 25 C -0.014 4.014 26 C -0.071 4.071 27 C -0.500 4.500 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.243 0.757 39 H 0.181 0.819 40 H 0.164 0.836 41 H 0.209 0.791 42 H 0.128 0.872 43 H 0.232 0.768 44 H 0.141 0.859 45 H 0.155 0.845 46 H 0.162 0.838 47 H 0.149 0.851 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.081 0.919 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 5.441 7.224 2.105 9.286 hybrid contribution 0.190 0.918 -0.437 1.034 sum 5.631 8.142 1.668 10.039 Atomic orbital electron populations 1.26286 1.22284 1.03948 1.04600 0.78639 0.65378 0.65678 0.65013 1.26125 1.06579 1.18114 1.04910 1.26420 0.99246 1.08256 1.15823 1.22259 0.98115 0.96338 0.90407 1.61445 1.23703 1.27352 1.03452 1.45022 1.05243 1.04707 1.76250 1.21484 0.91752 0.81913 0.75806 1.90784 1.30976 1.72352 1.48231 1.21899 0.94046 0.77144 1.10149 1.43380 1.59420 1.08039 1.04100 1.21988 1.02028 0.89195 0.93042 1.20845 1.12682 0.96336 0.92499 1.24538 0.85892 0.97131 1.08718 1.86457 1.17941 1.45393 1.86879 0.85148 0.79931 0.80096 0.73364 1.17131 1.19823 1.17156 1.19326 1.05307 0.93569 0.93646 1.20484 0.98690 0.98998 0.92218 1.20929 1.03095 0.97161 0.96102 1.21129 0.98816 0.92902 0.99742 1.20229 1.05641 1.00618 0.89080 1.18408 1.02968 0.91759 0.88248 1.22250 0.98025 0.96284 0.90538 1.26466 0.99298 1.08169 1.16039 0.90951 0.91083 0.92236 0.90760 0.90921 0.90757 0.91666 0.88601 0.90741 0.91462 0.75681 0.81886 0.83606 0.79111 0.87220 0.76798 0.85880 0.84464 0.83760 0.85137 0.91514 0.91497 0.91928 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 0.58 8.65 113.37 0.98 1.56 16 2 Si 1.06 -5.38 11.76 68.60 0.81 -4.57 16 3 C -0.45 2.79 8.65 113.37 0.98 3.77 16 4 C -0.41 1.03 5.24 72.29 0.38 1.40 16 5 C 0.06 -0.18 5.61 86.70 0.49 0.30 16 6 N -0.34 0.00 4.00 -512.67 -2.05 -2.05 16 7 N -0.57 2.03 4.63 -173.53 -0.80 1.22 16 8 C 0.50 0.81 8.00 87.66 0.70 1.52 16 9 O -0.55 -7.77 16.75 -3.03 -0.05 -7.82 16 10 C 0.09 -0.53 6.48 85.63 0.56 0.02 16 11 N -0.47 -1.49 2.27 -519.99 -1.18 -2.67 16 12 C 0.06 0.19 9.89 83.00 0.82 1.01 16 13 C -0.22 -1.45 5.58 -18.62 -0.10 -1.55 16 14 C -0.05 -0.21 3.06 71.24 0.22 0.00 16 15 O -0.56 -3.89 12.88 -148.98 -1.92 -5.81 16 16 Si 0.99 -0.14 26.08 68.60 1.79 1.65 16 17 H -0.25 0.33 7.03 99.48 0.70 1.03 16 18 H -0.27 -0.93 7.11 99.48 0.71 -0.23 16 19 H -0.25 0.16 7.11 99.48 0.71 0.86 16 20 C -0.11 -1.22 6.35 -20.20 -0.13 -1.34 16 21 C -0.09 -0.84 10.05 22.23 0.22 -0.62 16 22 C -0.15 -1.09 9.97 22.03 0.22 -0.87 16 23 C -0.11 -0.61 10.01 22.29 0.22 -0.38 16 24 C -0.14 -0.85 10.00 22.37 0.22 -0.63 16 25 C 0.09 0.76 6.81 39.03 0.27 1.03 16 26 C 0.06 -0.12 5.61 86.71 0.49 0.37 16 27 C -0.41 0.56 5.24 72.30 0.38 0.94 16 28 H 0.07 -0.14 7.96 -2.38 -0.02 -0.16 16 29 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 30 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 31 H 0.07 -0.55 7.96 -2.39 -0.02 -0.57 16 32 H 0.07 -0.42 7.96 -2.39 -0.02 -0.44 16 33 H 0.07 -0.46 7.96 -2.38 -0.02 -0.48 16 34 H 0.06 0.16 7.99 -2.39 -0.02 0.14 16 35 H 0.10 -0.50 8.00 -2.38 -0.02 -0.52 16 36 H 0.07 -0.19 8.04 -2.38 -0.02 -0.21 16 37 H 0.07 -0.54 7.58 -2.38 -0.02 -0.56 16 38 H 0.40 -4.70 8.83 -215.49 -1.90 -6.61 16 39 H 0.16 -2.30 8.12 -2.38 -0.02 -2.31 16 40 H 0.15 -1.63 8.14 -2.38 -0.02 -1.65 16 41 H 0.19 -0.69 6.29 -2.91 -0.02 -0.71 16 42 H 0.11 0.38 7.96 -2.39 -0.02 0.36 16 43 H 0.38 0.58 8.70 -74.06 -0.64 -0.07 16 44 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 45 H 0.14 0.38 8.06 -2.91 -0.02 0.36 16 46 H 0.14 0.08 8.06 -2.91 -0.02 0.05 16 47 H 0.13 0.21 8.06 -2.91 -0.02 0.19 16 48 H 0.07 -0.47 7.58 -2.39 -0.02 -0.49 16 49 H 0.07 -0.01 8.04 -2.39 -0.02 -0.03 16 50 H 0.06 0.25 7.99 -2.39 -0.02 0.23 16 51 H 0.09 -0.35 7.99 -2.39 -0.02 -0.37 16 Total: 0.00 -27.40 416.07 2.63 -24.76 By element: Atomic # 1 Polarization: -10.37 SS G_CDS: -0.87 Total: -11.24 kcal Atomic # 6 Polarization: -0.38 SS G_CDS: 6.91 Total: 6.53 kcal Atomic # 7 Polarization: 0.54 SS G_CDS: -4.03 Total: -3.50 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: -1.97 Total: -13.63 kcal Atomic # 14 Polarization: -5.52 SS G_CDS: 2.60 Total: -2.92 kcal Total: -27.40 2.63 -24.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_9818708.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.931 kcal (2) G-P(sol) polarization free energy of solvation -27.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.764 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds