Wall clock time and date at job start Thu Mar 4 2021 13:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36767 * 125.79762 * 2 1 4 4 C 1.47260 * 126.94617 * 0.02562 * 3 2 1 5 5 O 1.21623 * 119.99925 * 0.02562 * 4 3 2 6 6 N 1.34780 * 120.00282 * 180.02562 * 4 3 2 7 7 N 1.36602 * 120.00042 * 180.02562 * 6 4 3 8 8 C 1.46440 * 110.99689 * 247.40193 * 7 6 4 9 9 C 1.53923 * 109.46015 * 155.03385 * 8 7 6 10 10 Si 1.87566 * 106.84038 * 58.00315 * 9 8 7 11 11 C 1.86304 * 110.03345 * 196.89905 * 10 9 8 12 12 C 1.86305 * 110.11513 * 75.47178 * 10 9 8 13 13 C 1.87576 * 106.56758 * 316.16360 * 10 9 8 14 14 C 1.46447 * 111.00026 * 119.99818 * 7 6 4 15 15 C 1.46692 * 106.11426 * 180.02562 * 3 2 1 16 16 C 1.34484 * 106.33234 * 359.97438 * 15 3 2 17 17 C 1.50696 * 125.57372 * 179.97438 * 16 15 3 18 18 O 1.42903 * 109.47131 * 120.02351 * 17 16 15 19 19 Si 1.86305 * 109.47185 * 0.02892 * 17 16 15 20 20 H 1.48499 * 109.47126 * 179.97438 * 19 17 16 21 21 H 1.48496 * 109.46885 * 299.99843 * 19 17 16 22 22 H 1.48499 * 109.46850 * 59.99646 * 19 17 16 23 23 N 1.34655 * 125.80365 * 180.30776 * 2 1 3 24 24 H 1.08992 * 109.46952 * 90.00580 * 1 2 3 25 25 H 1.09003 * 109.47118 * 210.00617 * 1 2 3 26 26 H 1.09006 * 109.47433 * 330.00216 * 1 2 3 27 27 H 0.97000 * 119.99955 * 359.97438 * 6 4 3 28 28 H 1.09006 * 109.47012 * 275.02919 * 8 7 6 29 29 H 1.09002 * 109.47492 * 35.03137 * 8 7 6 30 30 H 1.09001 * 109.97448 * 298.67384 * 9 8 7 31 31 H 1.08997 * 110.05925 * 177.38282 * 9 8 7 32 32 H 1.08993 * 109.46994 * 177.12452 * 11 10 9 33 33 H 1.09000 * 109.46652 * 297.12698 * 11 10 9 34 34 H 1.08993 * 109.46867 * 57.12513 * 11 10 9 35 35 H 1.09002 * 109.47096 * 302.82462 * 12 10 9 36 36 H 1.08998 * 109.46941 * 62.82174 * 12 10 9 37 37 H 1.08996 * 109.47275 * 182.82623 * 12 10 9 38 38 H 1.09003 * 109.97556 * 284.50873 * 13 10 9 39 39 H 1.09000 * 110.05613 * 163.21191 * 13 10 9 40 40 H 1.09000 * 109.47087 * 324.95893 * 14 7 6 41 41 H 1.08994 * 109.47519 * 84.96499 * 14 7 6 42 42 H 1.08001 * 126.83293 * 180.02562 * 15 3 2 43 43 H 1.08999 * 109.47358 * 240.02711 * 17 16 15 44 44 H 0.96700 * 114.00311 * 300.00591 * 18 17 16 45 45 H 0.97007 * 124.85023 * 359.96033 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3070 1.1093 0.0000 4 6 1.8702 2.5156 0.0005 5 8 0.6839 2.7839 0.0015 6 7 2.7849 3.5055 -0.0001 7 7 2.3796 4.8100 0.0009 8 6 2.7242 5.4675 -1.2613 9 6 1.7676 6.6491 -1.5019 10 14 1.9388 7.7958 -0.0274 11 6 0.4918 8.9672 0.0415 12 6 3.5312 8.7558 -0.1439 13 6 1.9561 6.7055 1.4988 14 6 2.8780 5.5135 1.1847 15 6 3.6882 0.6152 -0.0006 16 6 3.6096 -0.7273 -0.0004 17 6 4.7820 -1.6741 -0.0014 18 8 4.7301 -2.4977 1.1653 19 14 6.3687 -0.6978 -0.0021 20 1 7.5240 -1.6309 -0.0025 21 1 6.4226 0.1580 -1.2145 22 1 6.4241 0.1575 1.2105 23 7 2.2948 -1.0921 -0.0059 24 1 -0.3633 -0.0001 -1.0276 25 1 -0.3633 -0.8899 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 3.7310 3.2915 -0.0005 28 1 3.7495 5.8342 -1.2119 29 1 2.6328 4.7534 -2.0798 30 1 0.7417 6.2885 -1.5761 31 1 2.0445 7.1741 -2.4161 32 1 0.5741 9.5944 0.9291 33 1 0.4906 9.5958 -0.8489 34 1 -0.4358 8.3965 0.0847 35 1 4.3697 8.0623 -0.2084 36 1 3.5115 9.3857 -1.0332 37 1 3.6442 9.3810 0.7418 38 1 0.9483 6.3503 1.7142 39 1 2.3447 7.2622 2.3515 40 1 2.8913 4.8308 2.0343 41 1 3.8881 5.8756 0.9938 42 1 4.5890 1.2111 -0.0004 43 1 4.7412 -2.3020 -0.8915 44 1 4.7621 -2.0047 1.9966 45 1 1.9734 -2.0074 -0.0102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_16915442_9865296.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:05:32 Heat of formation + Delta-G solvation = -30.050743 kcal Electronic energy + Delta-G solvation = -24279.307780 eV Core-core repulsion = 20842.979848 eV Total energy + Delta-G solvation = -3436.327932 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.158 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.48875 -40.67971 -38.42170 -37.67815 -34.19368 -32.88917 -32.12340 -32.08126 -29.45774 -29.02671 -28.33927 -28.11301 -25.44147 -23.90672 -23.39698 -22.04479 -21.43763 -20.68511 -19.14170 -18.45604 -17.26412 -16.90808 -16.74338 -16.43587 -15.87087 -15.68936 -15.50906 -14.97058 -14.83674 -14.73470 -14.32238 -14.19157 -13.98589 -13.92489 -13.70872 -13.56521 -13.52843 -13.38721 -13.18171 -13.04278 -12.98401 -12.94706 -12.78435 -12.27431 -12.25244 -12.06936 -11.85545 -10.93238 -10.75406 -10.64207 -10.44553 -10.31295 -10.19599 -9.91498 -9.61739 -9.20327 0.69634 1.07675 1.21207 1.53982 1.58415 1.68101 1.81385 1.92079 1.97810 2.08367 2.34988 2.53134 2.68745 3.38805 3.50127 3.56655 3.85996 4.00879 4.18471 4.20177 4.30067 4.33640 4.38756 4.45782 4.54841 4.67779 4.68275 4.68541 4.69260 4.82857 4.84017 4.86368 4.86668 4.90730 4.93222 5.02272 5.17986 5.45151 5.46100 5.60394 5.61706 5.66715 5.83333 5.97850 6.36371 6.43483 6.58580 6.62353 7.65722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.116 3.884 3 C -0.255 4.255 4 C 0.603 3.397 5 O -0.564 6.564 6 N -0.571 5.571 7 N -0.334 5.334 8 C 0.054 3.946 9 C -0.413 4.413 10 Si 1.063 2.937 11 C -0.460 4.460 12 C -0.450 4.450 13 C -0.412 4.412 14 C 0.053 3.947 15 C -0.173 4.173 16 C -0.008 4.008 17 C -0.059 4.059 18 O -0.554 6.554 19 Si 1.005 2.995 20 H -0.272 1.272 21 H -0.254 1.254 22 H -0.249 1.249 23 N -0.525 5.525 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.080 0.920 27 H 0.392 0.608 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.160 0.840 43 H 0.129 0.871 44 H 0.392 0.608 45 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 -0.458 0.108 4.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.004 4.004 3 C -0.266 4.266 4 C 0.393 3.607 5 O -0.443 6.443 6 N -0.315 5.315 7 N -0.153 5.153 8 C -0.073 4.073 9 C -0.498 4.498 10 Si 1.254 2.746 11 C -0.567 4.567 12 C -0.558 4.558 13 C -0.497 4.497 14 C -0.073 4.073 15 C -0.197 4.197 16 C -0.118 4.118 17 C -0.169 4.169 18 O -0.361 6.361 19 Si 0.827 3.173 20 H -0.197 1.197 21 H -0.178 1.178 22 H -0.173 1.173 23 N -0.121 5.121 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.099 0.901 27 H 0.232 0.768 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.114 0.886 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.177 0.823 43 H 0.146 0.854 44 H 0.241 0.759 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 4.156 -0.446 -0.301 4.190 hybrid contribution 0.424 -0.370 0.257 0.619 sum 4.580 -0.816 -0.043 4.652 Atomic orbital electron populations 1.20585 0.86284 1.04475 1.03912 1.20525 0.94254 0.85675 0.99964 1.19944 0.94050 0.91128 1.21525 1.17480 0.84793 0.83728 0.74654 1.90709 1.17900 1.84538 1.51122 1.44897 1.08623 1.00721 1.77212 1.61433 1.59424 0.90824 1.03608 1.22277 0.98537 0.96643 0.89872 1.26470 1.01463 1.06086 1.15788 0.78627 0.66515 0.64634 0.64815 1.26219 1.14595 1.11207 1.04679 1.26137 1.15872 1.08804 1.04995 1.26454 1.01777 1.05247 1.16212 1.22278 0.97612 0.96178 0.91282 1.21952 0.95831 0.93255 1.08622 1.20991 0.85540 0.94738 1.10554 1.24878 1.01878 0.97907 0.92253 1.86487 1.96858 1.36444 1.16305 0.84874 0.73467 0.77398 0.81589 1.19688 1.17780 1.17255 1.41549 1.05205 1.08982 1.56381 0.89927 0.89303 0.90081 0.76837 0.91885 0.91773 0.91462 0.88843 0.90901 0.90959 0.91963 0.91056 0.90810 0.90716 0.91353 0.88642 0.91299 0.91776 0.82272 0.85357 0.75892 0.72967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.21 9.88 71.24 0.70 0.50 16 2 C 0.12 0.40 7.17 41.78 0.30 0.70 16 3 C -0.26 -1.50 6.29 -19.04 -0.12 -1.62 16 4 C 0.60 6.23 7.91 86.61 0.69 6.92 16 5 O -0.56 -10.06 15.14 -4.10 -0.06 -10.12 16 6 N -0.57 -2.91 4.63 -176.00 -0.81 -3.72 16 7 N -0.33 -1.73 4.00 -512.68 -2.05 -3.78 16 8 C 0.05 0.11 5.61 86.70 0.49 0.59 16 9 C -0.41 -0.26 5.24 72.29 0.38 0.12 16 10 Si 1.06 -3.68 11.76 68.60 0.81 -2.87 16 11 C -0.46 0.40 8.65 113.37 0.98 1.38 16 12 C -0.45 2.02 8.65 113.37 0.98 3.00 16 13 C -0.41 -0.01 5.24 72.29 0.38 0.37 16 14 C 0.05 0.07 5.61 86.70 0.49 0.55 16 15 C -0.17 -0.08 9.03 23.62 0.21 0.13 16 16 C -0.01 0.01 6.48 40.98 0.27 0.28 16 17 C -0.06 0.28 3.08 71.23 0.22 0.50 16 18 O -0.55 1.92 12.88 -148.98 -1.92 0.00 16 19 Si 1.01 -4.92 25.84 68.60 1.77 -3.15 16 20 H -0.27 0.37 7.11 99.48 0.71 1.08 16 21 H -0.25 0.97 7.11 99.48 0.71 1.68 16 22 H -0.25 1.19 7.11 99.48 0.71 1.90 16 23 N -0.52 0.69 5.90 -171.08 -1.01 -0.32 16 24 H 0.08 0.13 8.14 -2.39 -0.02 0.12 16 25 H 0.09 -0.26 8.14 -2.39 -0.02 -0.28 16 26 H 0.08 0.62 6.46 -2.38 -0.02 0.60 16 27 H 0.39 -0.27 7.95 -215.50 -1.71 -1.98 16 28 H 0.06 -0.18 7.58 -2.38 -0.02 -0.19 16 29 H 0.06 0.30 8.04 -2.39 -0.02 0.28 16 30 H 0.07 0.34 7.99 -2.39 -0.02 0.32 16 31 H 0.09 -0.21 7.99 -2.39 -0.02 -0.22 16 32 H 0.07 -0.12 7.96 -2.39 -0.02 -0.13 16 33 H 0.07 -0.11 7.96 -2.39 -0.02 -0.13 16 34 H 0.06 0.08 7.96 -2.39 -0.02 0.06 16 35 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 36 H 0.07 -0.33 7.96 -2.39 -0.02 -0.35 16 37 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 38 H 0.07 0.29 7.99 -2.39 -0.02 0.27 16 39 H 0.09 -0.29 8.00 -2.39 -0.02 -0.31 16 40 H 0.07 0.22 8.04 -2.39 -0.02 0.20 16 41 H 0.06 -0.22 7.58 -2.39 -0.02 -0.24 16 42 H 0.16 -0.64 5.86 -2.91 -0.02 -0.66 16 43 H 0.13 -0.86 7.96 -2.39 -0.02 -0.88 16 44 H 0.39 -3.53 8.70 -74.06 -0.64 -4.17 16 45 H 0.43 -2.53 8.96 -92.70 -0.83 -3.36 16 Total: 0.00 -18.95 363.48 1.26 -17.69 By element: Atomic # 1 Polarization: -5.72 SS G_CDS: -1.42 Total: -7.14 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 5.96 Total: 13.43 kcal Atomic # 7 Polarization: -3.95 SS G_CDS: -3.88 Total: -7.83 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: -1.98 Total: -10.12 kcal Atomic # 14 Polarization: -8.60 SS G_CDS: 2.58 Total: -6.02 kcal Total: -18.95 1.26 -17.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_16915442_9865296.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.364 kcal (2) G-P(sol) polarization free energy of solvation -18.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds