Wall clock time and date at job start Thu Mar 4 2021 18:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86301 * 109.47222 * 2 1 4 4 C 1.50704 * 109.47123 * 119.99875 * 2 1 3 5 5 C 1.38250 * 119.96871 * 245.02490 * 4 2 1 6 6 C 1.38288 * 120.10917 * 179.97438 * 5 4 2 7 7 C 1.38129 * 120.05279 * 359.76642 * 6 5 4 8 8 C 1.38746 * 119.94586 * 0.50650 * 7 6 5 9 9 O 1.35900 * 120.05467 * 179.74253 * 8 7 6 10 10 C 1.42898 * 117.00172 * 359.72752 * 9 8 7 11 11 C 1.50703 * 109.47171 * 179.97438 * 10 9 8 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 H 1.09003 * 112.84993 * 336.19005 * 14 13 11 16 16 C 1.53781 * 113.61614 * 107.49783 * 14 13 11 17 17 C 1.53778 * 87.07849 * 89.11738 * 16 14 13 18 18 O 1.42907 * 113.61651 * 270.88179 * 17 16 14 19 19 C 1.53004 * 113.61658 * 139.98423 * 17 16 14 20 20 F 1.39905 * 109.46633 * 322.50106 * 19 17 16 21 21 F 1.39898 * 109.47517 * 82.49537 * 19 17 16 22 22 F 1.39893 * 109.47228 * 202.50493 * 19 17 16 23 23 C 1.53777 * 87.08604 * 25.43188 * 17 16 14 24 24 C 1.38162 * 119.97406 * 64.99928 * 4 2 1 25 25 H 0.96698 * 114.00529 * 299.99692 * 1 2 3 26 26 H 1.08996 * 109.47925 * 239.99665 * 2 1 3 27 27 H 1.48499 * 110.00183 * 178.67925 * 3 2 1 28 28 H 1.48503 * 109.99550 * 300.00031 * 3 2 1 29 29 H 1.07997 * 119.94730 * 359.97411 * 5 4 2 30 30 H 1.07992 * 119.97264 * 180.02562 * 6 5 4 31 31 H 1.08010 * 120.02456 * 180.27612 * 7 6 5 32 32 H 1.09002 * 109.47259 * 300.00149 * 10 9 8 33 33 H 1.09001 * 109.47074 * 60.00171 * 10 9 8 34 34 H 0.97005 * 119.99463 * 359.97438 * 13 11 10 35 35 H 1.09000 * 113.61467 * 203.66301 * 16 14 13 36 36 H 1.08991 * 113.61330 * 334.57193 * 16 14 13 37 37 H 0.96693 * 113.99928 * 277.50398 * 18 17 16 38 38 H 1.08998 * 113.61996 * 220.01715 * 23 17 16 39 39 H 1.09001 * 113.61655 * 89.11126 * 23 17 16 40 40 H 1.07999 * 120.02893 * 0.02562 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 1.2305 5 6 2.6382 -0.0114 2.1912 6 6 3.1001 -0.6603 3.3217 7 6 2.8518 -2.0079 3.4959 8 6 2.1474 -2.7128 2.5305 9 8 1.9064 -4.0398 2.6971 10 6 2.4126 -4.6467 3.8877 11 6 2.0507 -6.1095 3.8989 12 8 1.4209 -6.5855 2.9782 13 7 2.4261 -6.8888 4.9325 14 6 2.0748 -8.3109 4.9431 15 1 1.2038 -8.5364 4.3277 16 6 3.2708 -9.2429 4.6863 17 6 3.5032 -9.2343 6.2064 18 8 4.3579 -8.1779 6.6489 19 6 3.9003 -10.5987 6.7735 20 9 3.1932 -11.6047 6.1062 21 9 5.2736 -10.7966 6.5940 22 9 3.5972 -10.6425 8.1385 23 6 2.0056 -8.9178 6.3544 24 6 1.6845 -2.0595 1.3978 25 1 -0.3934 0.4416 0.7650 26 1 1.7924 -0.5138 -0.8899 27 1 3.5346 1.7703 0.0322 28 1 1.5614 2.4678 -1.2085 29 1 2.8302 1.0430 2.0586 30 1 3.6517 -0.1121 4.0710 31 1 3.2089 -2.5132 4.3812 32 1 3.4970 -4.5400 3.9171 33 1 1.9757 -4.1580 4.7586 34 1 2.9295 -6.5080 5.6691 35 1 2.9871 -10.2193 4.2935 36 1 4.0751 -8.7747 4.1190 37 1 5.3010 -8.3710 6.5583 38 1 1.7885 -8.1873 7.1337 39 1 1.3759 -9.8053 6.4176 40 1 1.1322 -2.6050 0.6470 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_17047570_4860298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 18:02:36 Heat of formation + Delta-G solvation = -238.117344 kcal Electronic energy + Delta-G solvation = -30177.153390 eV Core-core repulsion = 25124.446725 eV Total energy + Delta-G solvation = -5052.706665 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.106 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -51.25257 -48.79947 -48.73131 -41.81419 -41.23012 -40.00954 -38.87897 -37.23018 -36.45041 -34.31155 -32.46929 -31.66262 -29.70477 -28.34827 -27.19781 -26.79681 -24.23214 -23.67368 -22.76458 -21.70129 -21.02765 -20.08882 -19.54702 -19.44949 -19.29890 -18.46256 -17.70492 -17.46870 -17.38965 -17.05268 -17.01444 -16.64919 -16.18924 -16.04840 -15.72491 -15.56640 -15.45424 -15.25159 -15.17513 -15.00119 -14.91077 -14.89199 -14.70416 -14.65709 -14.18884 -14.05188 -13.91214 -13.80299 -13.41717 -12.98679 -12.90790 -12.64823 -12.60055 -12.14794 -12.01921 -11.93802 -11.68338 -11.25506 -11.08265 -10.48845 -10.29486 -9.93595 -9.28604 -4.98659 0.20817 0.39115 1.27181 1.35621 1.42555 1.50162 1.66248 1.97755 2.36368 2.52143 2.58495 2.65386 2.67506 2.84259 3.37134 3.39461 3.50418 3.52763 3.57863 3.68476 3.84582 3.99895 4.06260 4.13223 4.21338 4.25165 4.34529 4.45299 4.45742 4.49650 4.62821 4.65589 4.70272 4.75543 4.97996 5.24511 5.34662 5.37452 5.45194 5.69620 6.21097 6.28433 6.43507 6.75557 7.05714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.086 4.086 3 Si 0.795 3.205 4 C -0.085 4.085 5 C -0.155 4.155 6 C -0.070 4.070 7 C -0.202 4.202 8 C 0.114 3.886 9 O -0.323 6.323 10 C 0.038 3.962 11 C 0.517 3.483 12 O -0.569 6.569 13 N -0.689 5.689 14 C 0.128 3.872 15 H 0.105 0.895 16 C -0.167 4.167 17 C 0.072 3.928 18 O -0.515 6.515 19 C 0.431 3.569 20 F -0.179 7.179 21 F -0.187 7.187 22 F -0.184 7.184 23 C -0.118 4.118 24 C -0.151 4.151 25 H 0.396 0.604 26 H 0.099 0.901 27 H -0.281 1.281 28 H -0.302 1.302 29 H 0.152 0.848 30 H 0.164 0.836 31 H 0.161 0.839 32 H 0.125 0.875 33 H 0.127 0.873 34 H 0.423 0.577 35 H 0.119 0.881 36 H 0.095 0.905 37 H 0.406 0.594 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.358 4.103 7.674 9.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.195 4.195 3 Si 0.700 3.300 4 C -0.086 4.086 5 C -0.173 4.173 6 C -0.088 4.088 7 C -0.221 4.221 8 C 0.069 3.931 9 O -0.236 6.236 10 C -0.039 4.039 11 C 0.303 3.697 12 O -0.447 6.447 13 N -0.343 5.343 14 C 0.023 3.977 15 H 0.123 0.877 16 C -0.206 4.206 17 C 0.028 3.972 18 O -0.324 6.324 19 C 0.377 3.623 20 F -0.160 7.160 21 F -0.168 7.168 22 F -0.165 7.165 23 C -0.156 4.156 24 C -0.170 4.170 25 H 0.246 0.754 26 H 0.117 0.883 27 H -0.208 1.208 28 H -0.230 1.230 29 H 0.169 0.831 30 H 0.181 0.819 31 H 0.178 0.822 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.262 0.738 35 H 0.137 0.863 36 H 0.114 0.886 37 H 0.259 0.741 38 H 0.129 0.871 39 H 0.150 0.850 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.833 4.154 6.087 7.895 hybrid contribution 0.996 -1.542 -0.083 1.837 sum 3.829 2.612 6.004 7.585 Atomic orbital electron populations 1.86480 1.17353 1.82321 1.50451 1.25425 0.85325 1.11852 0.96872 0.93559 0.77717 0.74097 0.84588 1.20208 0.98254 0.93052 0.97048 1.21218 1.00645 1.00579 0.94837 1.21352 0.96713 0.93536 0.97180 1.21641 1.03577 0.96418 1.00422 1.19184 0.96319 0.82280 0.95348 1.86117 1.74668 1.20878 1.41986 1.22704 1.02555 0.90011 0.88663 1.20537 0.78620 0.88547 0.81962 1.90773 1.40825 1.75943 1.37163 1.45367 1.57258 1.08425 1.23276 1.21591 0.98202 0.80202 0.97750 0.87664 1.24244 1.00390 1.02752 0.93171 1.23584 0.95145 0.82331 0.96120 1.86486 1.22407 1.37275 1.86230 1.21516 0.74695 0.89792 0.76304 1.93190 1.78558 1.63950 1.80322 1.93181 1.32571 1.96018 1.95051 1.93211 1.92802 1.96984 1.33512 1.23579 0.90036 1.04111 0.97877 1.20305 1.04301 0.94662 0.97738 0.75425 0.88302 1.20776 1.23038 0.83136 0.81851 0.82183 0.85770 0.85569 0.73787 0.86306 0.88634 0.74083 0.87065 0.85000 0.87138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -1.71 12.83 -148.98 -1.91 -3.62 16 2 C -0.09 -0.15 2.80 71.24 0.20 0.05 16 3 Si 0.80 -1.75 29.80 68.60 2.04 0.30 16 4 C -0.09 -0.17 5.35 -19.88 -0.11 -0.28 16 5 C -0.16 0.43 8.67 22.28 0.19 0.62 16 6 C -0.07 0.34 10.04 22.26 0.22 0.57 16 7 C -0.20 0.63 9.04 22.37 0.20 0.83 16 8 C 0.11 0.46 6.69 22.50 0.15 0.61 16 9 O -0.32 -2.13 9.67 -73.39 -0.71 -2.84 16 10 C 0.04 -0.13 5.22 71.24 0.37 0.25 16 11 C 0.52 1.03 7.91 87.66 0.69 1.72 16 12 O -0.57 -7.65 16.10 16.01 0.26 -7.39 16 13 N -0.69 3.36 5.15 -440.04 -2.27 1.09 16 14 C 0.13 -0.52 4.32 45.52 0.20 -0.32 16 15 H 0.11 -0.03 7.46 -2.39 -0.02 -0.05 16 16 C -0.17 0.91 7.15 31.12 0.22 1.13 16 17 C 0.07 -0.46 1.36 -10.27 -0.01 -0.47 16 18 O -0.51 4.53 12.14 -148.98 -1.81 2.72 16 19 C 0.43 -0.97 2.85 71.98 0.21 -0.77 16 20 F -0.18 0.09 15.75 44.97 0.71 0.80 16 21 F -0.19 0.19 16.65 44.97 0.75 0.93 16 22 F -0.18 -0.14 17.18 44.97 0.77 0.63 16 23 C -0.12 0.87 7.01 31.12 0.22 1.09 16 24 C -0.15 -0.99 9.62 22.36 0.22 -0.77 16 25 H 0.40 -2.27 8.70 -74.06 -0.64 -2.91 16 26 H 0.10 0.40 7.96 -2.39 -0.02 0.38 16 27 H -0.28 -0.49 7.11 99.48 0.71 0.22 16 28 H -0.30 -1.71 7.11 99.48 0.71 -1.00 16 29 H 0.15 -1.17 4.90 -2.91 -0.01 -1.19 16 30 H 0.16 -1.84 8.06 -2.91 -0.02 -1.86 16 31 H 0.16 -1.60 6.30 -2.91 -0.02 -1.62 16 32 H 0.12 -1.18 7.67 -2.39 -0.02 -1.20 16 33 H 0.13 -1.23 7.65 -2.39 -0.02 -1.25 16 34 H 0.42 -4.28 7.59 -92.70 -0.70 -4.98 16 35 H 0.12 -0.67 7.13 -2.39 -0.02 -0.68 16 36 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 37 H 0.41 -5.50 8.43 -74.06 -0.62 -6.13 16 38 H 0.11 -0.96 8.14 -2.39 -0.02 -0.98 16 39 H 0.13 -1.17 7.88 -2.39 -0.02 -1.19 16 40 H 0.11 1.12 8.06 -2.91 -0.02 1.10 16 Total: 0.00 -27.02 351.59 0.02 -27.00 By element: Atomic # 1 Polarization: -23.06 SS G_CDS: -0.79 Total: -23.85 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 2.97 Total: 4.24 kcal Atomic # 7 Polarization: 3.36 SS G_CDS: -2.27 Total: 1.09 kcal Atomic # 8 Polarization: -6.97 SS G_CDS: -4.17 Total: -11.14 kcal Atomic # 9 Polarization: 0.13 SS G_CDS: 2.23 Total: 2.36 kcal Atomic # 14 Polarization: -1.75 SS G_CDS: 2.04 Total: 0.30 kcal Total: -27.02 0.02 -27.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_17047570_4860298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -211.120 kcal (2) G-P(sol) polarization free energy of solvation -27.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds