Wall clock time and date at job start Thu Mar 4 2021 12:31:21
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= 0
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50695 * 1
3 3 C 1.37936 * 120.07297 * 2 1
4 4 C 1.38380 * 120.14443 * 179.72784 * 3 2 1
5 5 C 1.50707 * 119.85398 * 180.27510 * 4 3 2
6 6 C 1.38340 * 120.29246 * 0.51324 * 4 3 2
7 7 C 1.50697 * 119.92520 * 179.76589 * 6 4 3
8 8 O 1.42901 * 109.47208 * 284.71824 * 7 6 4
9 9 Si 1.86305 * 109.46876 * 164.72027 * 7 6 4
10 10 C 1.37978 * 120.14411 * 359.48516 * 6 4 3
11 11 C 1.39555 * 119.85345 * 0.26068 * 10 6 4
12 12 C 1.47842 * 120.14413 * 180.02562 * 11 10 6
13 13 O 1.21559 * 119.99679 * 173.74668 * 12 11 10
14 14 N 1.34776 * 120.00127 * 353.74907 * 12 11 10
15 15 C 1.46497 * 119.99863 * 179.97438 * 14 12 11
16 16 H 1.09001 * 112.85297 * 336.20034 * 15 14 12
17 17 C 1.53783 * 113.61443 * 107.50168 * 15 14 12
18 18 C 1.53775 * 87.08348 * 139.97815 * 17 15 14
19 19 O 1.42899 * 113.61430 * 89.11576 * 18 17 15
20 20 C 1.52999 * 113.69582 * 220.00985 * 18 17 15
21 21 F 1.39893 * 109.47650 * 157.53291 * 20 18 17
22 22 F 1.39899 * 109.47117 * 277.53783 * 20 18 17
23 23 F 1.39900 * 109.46818 * 37.53461 * 20 18 17
24 24 C 1.53782 * 87.08266 * 334.56946 * 18 17 15
25 25 H 1.09006 * 109.46909 * 263.43044 * 1 2 3
26 26 H 1.08995 * 109.47400 * 23.42695 * 1 2 3
27 27 H 1.08999 * 109.47366 * 143.43549 * 1 2 3
28 28 H 1.08000 * 119.92632 * 359.97438 * 3 2 1
29 29 H 1.09001 * 109.47271 * 270.23477 * 5 4 3
30 30 H 1.08997 * 109.46872 * 30.23255 * 5 4 3
31 31 H 1.09001 * 109.46888 * 150.23323 * 5 4 3
32 32 H 1.08996 * 109.47461 * 44.72432 * 7 6 4
33 33 H 0.96704 * 114.00079 * 179.97438 * 8 7 6
34 34 H 1.48503 * 109.99746 * 60.00318 * 9 7 6
35 35 H 1.48508 * 109.99924 * 181.31637 * 9 7 6
36 36 H 1.07999 * 120.07466 * 180.23459 * 10 6 4
37 37 H 0.96993 * 120.00019 * 359.97438 * 14 12 11
38 38 H 1.08996 * 113.62019 * 254.53015 * 17 15 14
39 39 H 1.09009 * 113.61226 * 25.43115 * 17 15 14
40 40 H 0.96703 * 113.99997 * 82.50323 * 19 18 17
41 41 H 1.09003 * 113.61503 * 270.88501 * 24 18 17
42 42 H 1.08994 * 113.69008 * 139.98547 * 24 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1982 1.1937 0.0000
4 6 3.5819 1.1954 0.0057
5 6 4.3305 2.5034 0.0119
6 6 4.2813 0.0018 0.0007
7 6 5.7882 0.0134 0.0016
8 8 6.2627 0.3652 -1.2996
9 14 6.4219 -1.6783 0.4573
10 6 3.6021 -1.1992 0.0007
11 6 2.2065 -1.2081 0.0003
12 6 1.4722 -2.4912 0.0009
13 8 0.2620 -2.4989 0.1152
14 7 2.1446 -3.6525 -0.1252
15 6 1.4169 -4.9240 -0.1240
16 1 0.4521 -4.8591 0.3790
17 6 1.3495 -5.5964 -1.5054
18 6 1.5786 -6.9324 -0.7792
19 8 0.3710 -7.5683 -0.3558
20 6 2.5214 -7.8818 -1.5213
21 9 3.0708 -8.7957 -0.6158
22 9 1.8071 -8.5729 -2.5059
23 9 3.5482 -7.1448 -2.1210
24 6 2.2691 -6.1210 0.3298
25 1 -0.3633 -0.1176 1.0210
26 1 -0.3634 0.9429 -0.4086
27 1 -0.3634 -0.8254 -0.6122
28 1 1.6581 2.1290 -0.0004
29 1 4.5115 2.8234 -1.0142
30 1 3.7382 3.2585 0.5288
31 1 5.2831 2.3744 0.5257
32 1 6.1456 0.7430 0.7282
33 1 7.2265 0.3927 -1.3727
34 1 5.9417 -2.6823 -0.5260
35 1 7.9065 -1.6720 0.4927
36 1 4.1491 -2.1304 0.0007
37 1 3.1101 -3.6464 -0.2167
38 1 0.3717 -5.5201 -1.9810
39 1 2.1671 -5.3142 -2.1688
40 1 -0.0679 -8.0801 -1.0489
41 1 3.3381 -5.9821 0.1682
42 1 2.0346 -6.4671 1.3363
There are 63 doubly filled levels
RHF calculation, no. of doubly occupied orbitals= 63
No. of singly occupied orbitals= 1
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
m_22_17047590_9599494.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Thu Mar 4 2021 12:31:21
Heat of formation + Delta-G solvation = -205.731962 kcal
Electronic energy + Delta-G solvation = -31272.910630 eV
Core-core repulsion = 26384.752873 eV
Total energy + Delta-G solvation = -4888.157757 eV
No. of doubly occupied orbitals = 63
and no. of open levels = 1
Molecular weight
(most abundant/longest-lived isotopes) = 346.122 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-51.29392 -48.83925 -48.76596 -41.87085 -40.91137 -39.65507 -37.73009 -36.69325
-34.64547 -34.46911 -33.03156 -29.59321 -28.91872 -28.23850 -27.21258 -25.58207
-24.38942 -23.60477 -22.27941 -21.60216 -20.74577 -19.99569 -19.58133 -19.48332
-18.66748 -18.55320 -17.61528 -17.03905 -16.82527 -16.45778 -16.30817 -16.05391
-15.94623 -15.62703 -15.48505 -15.31690 -15.21333 -14.95121 -14.93240 -14.79509
-14.75635 -14.56737 -14.43127 -14.12569 -13.95891 -13.85332 -13.68473 -13.34897
-13.31011 -13.11950 -12.87691 -12.75518 -12.60321 -12.48509 -11.95964 -11.87445
-11.83303 -11.37728 -10.76511 -10.42551 -10.28437 -9.88918 -9.61743 -4.94326
-0.25355 0.17328 1.27257 1.39791 1.56589 1.68388 1.90906 2.01915
2.37267 2.53246 2.59471 2.63632 2.82276 3.31894 3.32782 3.43688
3.45852 3.57571 3.64719 3.76258 3.84384 4.07268 4.12459 4.18824
4.37098 4.39315 4.45651 4.53171 4.59754 4.62597 4.69942 4.75777
4.78385 4.80929 4.85921 4.92131 5.06957 5.12992 5.25392 5.38496
5.49752 5.51074 5.81630 6.25779 6.35645 6.60522 7.06982
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.118 4.118
2 C -0.024 4.024
3 C -0.137 4.137
4 C -0.032 4.032
5 C -0.119 4.119
6 C -0.100 4.100
7 C -0.082 4.082
8 O -0.553 6.553
9 Si 0.745 3.255
10 C -0.073 4.073
11 C -0.161 4.161
12 C 0.562 3.438
13 O -0.555 6.555
14 N -0.709 5.709
15 C 0.140 3.860
16 H 0.117 0.883
17 C -0.168 4.168
18 C 0.071 3.929
19 O -0.518 6.518
20 C 0.436 3.564
21 F -0.181 7.181
22 F -0.185 7.185
23 F -0.177 7.177
24 C -0.122 4.122
25 H 0.074 0.926
26 H 0.073 0.927
27 H 0.077 0.923
28 H 0.148 0.852
29 H 0.075 0.925
30 H 0.081 0.919
31 H 0.081 0.919
32 H 0.098 0.902
33 H 0.394 0.606
34 H -0.279 1.279
35 H -0.285 1.285
36 H 0.142 0.858
37 H 0.411 0.589
38 H 0.097 0.903
39 H 0.113 0.887
40 H 0.405 0.595
41 H 0.128 0.872
42 H 0.110 0.890
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.834 2.494 2.405 5.167
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C -0.025 4.025
3 C -0.155 4.155
4 C -0.032 4.032
5 C -0.175 4.175
6 C -0.100 4.100
7 C -0.190 4.190
8 O -0.363 6.363
9 Si 0.649 3.351
10 C -0.091 4.091
11 C -0.164 4.164
12 C 0.352 3.648
13 O -0.435 6.435
14 N -0.360 5.360
15 C 0.034 3.966
16 H 0.135 0.865
17 C -0.207 4.207
18 C 0.026 3.974
19 O -0.327 6.327
20 C 0.381 3.619
21 F -0.163 7.163
22 F -0.166 7.166
23 F -0.158 7.158
24 C -0.159 4.159
25 H 0.092 0.908
26 H 0.092 0.908
27 H 0.095 0.905
28 H 0.166 0.834
29 H 0.094 0.906
30 H 0.099 0.901
31 H 0.100 0.900
32 H 0.116 0.884
33 H 0.245 0.755
34 H -0.205 1.205
35 H -0.211 1.211
36 H 0.160 0.840
37 H 0.249 0.751
38 H 0.115 0.885
39 H 0.131 0.869
40 H 0.257 0.743
41 H 0.146 0.854
42 H 0.129 0.871
Dipole moment (debyes) X Y Z Total
from point charges 2.985 2.071 2.668 4.507
hybrid contribution 1.114 -0.125 -1.762 2.089
sum 4.099 1.946 0.906 4.627
Atomic orbital electron populations
1.21027 0.89924 1.03191 1.03275 1.20229 0.97068 0.91884 0.93332
1.21204 0.93620 0.98098 1.02559 1.20268 0.93604 0.95986 0.93353
1.20945 1.00569 0.92826 1.03161 1.19197 0.94369 0.92717 1.03693
1.24911 0.93292 1.12553 0.88287 1.86572 1.28251 1.91310 1.30124
0.94373 0.78412 0.74446 0.87848 1.21270 0.92734 0.98360 0.96732
1.19627 0.93545 0.92924 1.10291 1.18413 0.86800 0.84255 0.75368
1.90745 1.14828 1.87424 1.50507 1.45784 1.11250 1.04883 1.74099
1.22184 0.97297 0.81027 0.96052 0.86522 1.24273 1.05756 0.92023
0.98671 1.23167 0.86359 0.89363 0.98462 1.86622 1.34703 1.69425
1.41966 1.21332 0.81415 0.81112 0.78038 1.93214 1.86879 1.69103
1.67085 1.93185 1.77863 1.81272 1.64320 1.93184 1.61436 1.76662
1.84541 1.23602 1.00966 0.91853 0.99511 0.90794 0.90827 0.90464
0.83446 0.90634 0.90063 0.90048 0.88444 0.75523 1.20545 1.21144
0.84030 0.75123 0.88458 0.86897 0.74253 0.85414 0.87134
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -0.52 8.73 71.23 0.62 0.10 16
2 C -0.02 -0.10 5.91 -19.61 -0.12 -0.22 16
3 C -0.14 -0.20 9.31 22.23 0.21 0.01 16
4 C -0.03 -0.02 5.89 -19.80 -0.12 -0.14 16
5 C -0.12 0.39 9.54 71.24 0.68 1.07 16
6 C -0.10 -0.03 5.29 -19.90 -0.11 -0.13 16
7 C -0.08 0.29 2.03 71.24 0.14 0.43 16
8 O -0.55 0.61 12.79 -148.98 -1.91 -1.29 16
9 Si 0.74 -3.86 30.19 68.60 2.07 -1.79 16
10 C -0.07 -0.02 8.13 22.53 0.18 0.16 16
11 C -0.16 -0.61 5.87 -20.09 -0.12 -0.73 16
12 C 0.56 2.82 7.70 86.79 0.67 3.49 16
13 O -0.56 -6.11 12.95 -3.90 -0.05 -6.16 16
14 N -0.71 0.72 5.30 -442.90 -2.35 -1.63 16
15 C 0.14 -0.21 4.17 45.52 0.19 -0.02 16
16 H 0.12 0.28 7.46 -2.39 -0.02 0.27 16
17 C -0.17 0.46 7.15 31.12 0.22 0.68 16
18 C 0.07 -0.18 1.36 -10.27 -0.01 -0.20 16
19 O -0.52 1.00 13.41 -148.98 -2.00 -1.00 16
20 C 0.44 -0.03 2.85 71.98 0.21 0.18 16
21 F -0.18 -0.48 17.18 44.97 0.77 0.30 16
22 F -0.18 -0.22 16.65 44.97 0.75 0.53 16
23 F -0.18 -0.09 15.76 44.97 0.71 0.62 16
24 C -0.12 0.57 7.01 31.12 0.22 0.78 16
25 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16
26 H 0.07 0.07 8.04 -2.39 -0.02 0.05 16
27 H 0.08 0.65 5.86 -2.39 -0.01 0.64 16
28 H 0.15 -0.35 8.06 -2.91 -0.02 -0.37 16
29 H 0.08 -0.16 8.14 -2.39 -0.02 -0.18 16
30 H 0.08 -0.45 8.08 -2.39 -0.02 -0.47 16
31 H 0.08 -0.43 6.21 -2.39 -0.01 -0.45 16
32 H 0.10 -0.72 6.47 -2.39 -0.02 -0.74 16
33 H 0.39 -3.44 8.74 -74.05 -0.65 -4.09 16
34 H -0.28 0.27 6.74 99.48 0.67 0.94 16
35 H -0.28 0.15 7.11 99.48 0.71 0.86 16
36 H 0.14 -0.57 3.29 -2.91 -0.01 -0.58 16
37 H 0.41 -2.26 6.80 -92.71 -0.63 -2.89 16
38 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16
39 H 0.11 -0.41 7.14 -2.38 -0.02 -0.42 16
40 H 0.40 -3.16 8.42 -74.06 -0.62 -3.78 16
41 H 0.13 -1.05 7.86 -2.39 -0.02 -1.07 16
42 H 0.11 -0.54 8.14 -2.39 -0.02 -0.56 16
Total: 0.00 -17.78 354.04 0.10 -17.69
By element:
Atomic # 1 Polarization: -11.96 SS G_CDS: -0.77 Total: -12.73 kcal
Atomic # 6 Polarization: 2.59 SS G_CDS: 2.87 Total: 5.46 kcal
Atomic # 7 Polarization: 0.72 SS G_CDS: -2.35 Total: -1.63 kcal
Atomic # 8 Polarization: -4.50 SS G_CDS: -3.95 Total: -8.45 kcal
Atomic # 9 Polarization: -0.78 SS G_CDS: 2.23 Total: 1.45 kcal
Atomic # 14 Polarization: -3.86 SS G_CDS: 2.07 Total: -1.79 kcal
Total: -17.78 0.10 -17.69 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
m_22_17047590_9599494.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -188.046 kcal
(2) G-P(sol) polarization free energy of solvation -17.785 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -205.830 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.098 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.686 kcal
(6) G-S(sol) free energy of system = (1) + (5) -205.732 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds