Wall clock time and date at job start Thu Mar 4 2021 14:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 Si 1.86301 * 109.47207 * 2 1 4 4 C 1.86299 * 109.90617 * 303.86317 * 3 2 1 5 5 C 1.53000 * 109.47227 * 296.14266 * 4 3 2 6 6 C 1.87351 * 109.92063 * 64.97182 * 3 2 1 7 7 C 1.53823 * 107.31008 * 166.18963 * 6 3 2 8 8 N 1.46304 * 109.22429 * 306.10663 * 7 6 3 9 9 C 1.34776 * 119.08688 * 252.35112 * 8 7 6 10 10 O 1.21584 * 120.00049 * 5.29236 * 9 8 7 11 11 C 1.47582 * 119.99709 * 185.28574 * 9 8 7 12 12 C 1.36500 * 120.00899 * 75.28700 * 11 9 8 13 13 N 1.35940 * 120.50829 * 179.72897 * 12 11 9 14 14 C 1.36999 * 132.41598 * 179.61929 * 13 12 11 15 15 C 1.50703 * 126.42768 * 0.71338 * 14 13 12 16 16 O 1.42905 * 109.46740 * 29.71182 * 15 14 13 17 17 Si 1.86301 * 109.47083 * 149.71272 * 15 14 13 18 18 H 1.48494 * 109.46995 * 60.00071 * 17 15 14 19 19 H 1.48503 * 109.47070 * 300.00065 * 17 15 14 20 20 H 1.48497 * 109.46921 * 180.02562 * 17 15 14 21 21 C 1.35009 * 107.14296 * 180.45017 * 14 13 12 22 22 N 1.33581 * 108.65663 * 0.26175 * 21 14 13 23 23 C 1.32409 * 109.22296 * 0.02562 * 22 21 14 24 24 C 1.41256 * 132.11720 * 180.02562 * 23 22 21 25 25 Br 1.89103 * 120.25161 * 359.97438 * 24 23 22 26 26 C 1.35708 * 119.48976 * 179.97438 * 24 23 22 27 27 C 1.46304 * 121.82433 * 72.64031 * 8 7 6 28 28 C 1.54326 * 108.95128 * 287.39331 * 27 8 7 29 29 H 1.09007 * 109.46465 * 65.00568 * 1 2 3 30 30 H 1.08997 * 109.46845 * 185.00451 * 1 2 3 31 31 H 1.09002 * 109.47156 * 305.00999 * 1 2 3 32 32 H 1.08998 * 109.47211 * 239.99818 * 2 1 3 33 33 H 1.09003 * 109.46744 * 119.99823 * 2 1 3 34 34 H 1.08999 * 109.47321 * 56.14095 * 4 3 2 35 35 H 1.09006 * 109.46754 * 176.14549 * 4 3 2 36 36 H 1.08996 * 109.47172 * 184.98775 * 5 4 3 37 37 H 1.09008 * 109.46911 * 304.98655 * 5 4 3 38 38 H 1.09000 * 109.47106 * 64.98017 * 5 4 3 39 39 H 1.09004 * 109.88697 * 46.73804 * 6 3 2 40 40 H 1.08999 * 109.88861 * 285.64118 * 6 3 2 41 41 H 1.09000 * 109.51147 * 186.18845 * 7 6 3 42 42 H 1.08990 * 109.55439 * 66.05701 * 7 6 3 43 43 H 1.07999 * 119.74236 * 0.03538 * 12 11 9 44 44 H 1.08996 * 109.47116 * 269.71612 * 15 14 13 45 45 H 0.96705 * 113.99854 * 60.00214 * 16 15 14 46 46 H 1.08005 * 125.67000 * 180.23907 * 21 14 13 47 47 H 1.08005 * 120.22739 * 180.02562 * 26 24 23 48 48 H 1.08997 * 109.51567 * 47.28417 * 27 8 7 49 49 H 1.09006 * 109.51096 * 167.43772 * 27 8 7 50 50 H 1.09003 * 109.97446 * 294.51409 * 28 27 8 51 51 H 1.09008 * 109.87856 * 173.45049 * 28 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 14 2.1511 1.7565 0.0000 4 6 1.4423 2.6799 -1.4545 5 6 1.9491 2.0510 -2.7540 6 6 1.6613 2.6067 1.5960 7 6 2.4819 3.9041 1.6939 8 7 3.9033 3.5867 1.5552 9 6 4.6993 3.6568 2.6405 10 8 4.2183 3.8859 3.7334 11 6 6.1548 3.4554 2.5023 12 6 6.9329 4.4419 1.9688 13 7 8.2753 4.2693 1.8418 14 6 9.2676 5.0734 1.3463 15 6 9.0984 6.4634 0.7889 16 8 7.9912 7.1015 1.4287 17 14 10.6480 7.4498 1.0994 18 1 11.7984 6.7866 0.4347 19 1 10.8995 7.5297 2.5608 20 1 10.4810 8.8196 0.5508 21 6 10.4263 4.3894 1.4563 22 7 10.1680 3.1954 1.9967 23 6 8.8694 3.0968 2.2359 24 6 8.0842 2.0619 2.7904 25 35 8.8931 0.4453 3.3457 26 6 6.7448 2.2366 2.9215 27 6 4.4858 3.2013 0.2696 28 6 4.0227 1.7717 -0.0820 29 1 -0.3632 0.4343 -0.9315 30 1 -0.3633 -1.0237 0.0896 31 1 -0.3633 0.5896 0.8417 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.3541 2.6248 -1.4246 35 1 1.7548 3.7232 -1.4098 36 1 1.6068 2.6438 -3.6022 37 1 3.0389 2.0258 -2.7445 38 1 1.5630 1.0354 -2.8409 39 1 1.8864 1.9606 2.4446 40 1 0.5970 2.8414 1.5796 41 1 2.3066 4.3735 2.6619 42 1 2.1819 4.5864 0.8987 43 1 6.4792 5.3685 1.6496 44 1 8.9137 6.4047 -0.2837 45 1 8.0872 7.1880 2.3870 46 1 11.4002 4.7478 1.1567 47 1 6.1331 1.4532 3.3443 48 1 4.1532 3.8942 -0.5032 49 1 5.5733 3.2278 0.3400 50 1 4.4312 1.0607 0.6361 51 1 4.3519 1.5125 -1.0883 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_17051536_12335884.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:54:14 Heat of formation + Delta-G solvation = -2.090602 kcal Electronic energy + Delta-G solvation = -33612.431381 eV Core-core repulsion = 29297.281848 eV Total energy + Delta-G solvation = -4315.149533 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 439.084 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -44.26363 -41.46289 -38.60509 -38.00198 -37.43828 -35.31109 -33.71780 -33.20308 -32.74795 -32.03565 -31.73271 -30.68002 -29.88872 -26.89303 -25.86866 -24.52651 -24.17391 -23.58651 -23.35724 -23.15229 -22.44798 -20.60603 -19.35518 -18.92001 -18.12456 -17.72024 -17.56049 -17.29968 -16.38175 -16.19679 -15.96911 -15.86387 -15.64077 -15.51538 -15.40685 -15.11144 -14.91628 -14.66912 -14.42405 -14.26596 -14.15134 -14.07418 -13.95107 -13.59104 -13.43836 -13.35600 -13.13534 -12.99703 -12.77301 -12.73746 -12.70120 -12.31795 -12.16654 -12.11281 -12.05396 -11.98125 -11.71842 -11.54847 -11.41307 -11.32727 -11.19900 -10.85707 -10.42399 -10.36852 -10.26305 -10.00580 -9.79268 -9.06562 -0.84008 -0.28747 0.16908 0.89188 1.08363 1.42709 1.52653 1.55001 1.61210 1.77486 1.82048 1.85541 1.95624 1.97188 2.05096 2.59626 2.81367 2.96021 3.11995 3.34438 3.47879 3.49592 3.81979 4.04400 4.11732 4.14655 4.29192 4.30701 4.36426 4.39942 4.40814 4.49107 4.49473 4.52773 4.53202 4.58486 4.61207 4.72355 4.76779 4.83092 4.86214 4.95727 5.00623 5.19308 5.23889 5.28359 5.30244 5.34125 5.37756 5.44120 5.49790 5.52973 5.59310 5.67081 6.08332 6.37841 6.51319 6.84928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.426 4.426 3 Si 1.061 2.939 4 C -0.412 4.412 5 C -0.151 4.151 6 C -0.435 4.435 7 C 0.114 3.886 8 N -0.592 5.592 9 C 0.575 3.425 10 O -0.558 6.558 11 C -0.151 4.151 12 C 0.134 3.866 13 N -0.350 5.350 14 C -0.079 4.079 15 C -0.043 4.043 16 O -0.549 6.549 17 Si 1.005 2.995 18 H -0.240 1.240 19 H -0.268 1.268 20 H -0.259 1.259 21 C 0.027 3.973 22 N -0.497 5.497 23 C 0.223 3.777 24 C -0.074 4.074 25 Br -0.001 7.001 26 C -0.026 4.026 27 C 0.106 3.894 28 C -0.434 4.434 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.204 0.796 44 H 0.146 0.854 45 H 0.389 0.611 46 H 0.209 0.791 47 H 0.164 0.836 48 H 0.108 0.892 49 H 0.081 0.919 50 H 0.073 0.927 51 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.492 3.219 -6.567 7.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.511 4.511 3 Si 1.250 2.750 4 C -0.499 4.499 5 C -0.209 4.209 6 C -0.520 4.520 7 C -0.007 4.007 8 N -0.323 5.323 9 C 0.360 3.640 10 O -0.437 6.437 11 C -0.159 4.159 12 C 0.009 3.991 13 N -0.023 5.023 14 C -0.191 4.191 15 C -0.153 4.153 16 O -0.356 6.356 17 Si 0.825 3.175 18 H -0.163 1.163 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.123 4.123 22 N -0.216 5.216 23 C -0.022 4.022 24 C -0.156 4.156 25 Br 0.085 6.915 26 C -0.052 4.052 27 C -0.015 4.015 28 C -0.520 4.520 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.094 0.906 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.221 0.779 44 H 0.164 0.836 45 H 0.239 0.761 46 H 0.225 0.775 47 H 0.182 0.818 48 H 0.126 0.874 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.319 2.698 -6.140 6.835 hybrid contribution -0.860 0.081 0.655 1.084 sum -2.179 2.779 -5.485 6.523 Atomic orbital electron populations 1.21417 0.95357 1.01674 1.02323 1.26197 1.00803 1.19817 1.04320 0.78664 0.65438 0.65577 0.65296 1.26036 1.06426 1.07702 1.09721 1.21430 1.01663 1.00673 0.97100 1.26871 1.04315 1.03541 1.17241 1.21386 0.77512 0.97536 1.04228 1.48103 1.09352 1.65944 1.08896 1.17859 0.85142 0.76556 0.84405 1.90854 1.75840 1.49740 1.27233 1.19236 0.94619 0.95650 1.06369 1.22174 0.80421 1.01009 0.95492 1.42635 1.06575 1.13272 1.39773 1.22425 0.87084 0.98028 1.11569 1.24941 1.02369 0.86632 1.01350 1.86454 1.42381 1.80093 1.26644 0.84919 0.73868 0.78222 0.80454 1.16317 1.19204 1.18314 1.22914 0.99218 0.90080 1.00085 1.70798 1.10225 1.21148 1.19397 1.20496 0.89800 0.87715 1.04146 1.20465 0.93640 0.93949 1.07545 1.96819 1.82551 1.23562 1.88590 1.21074 0.92141 0.96872 0.95101 1.21727 0.99162 0.96778 0.83857 1.26910 1.21534 0.97970 1.05557 0.91772 0.93765 0.92223 0.90617 0.91598 0.90523 0.89812 0.93282 0.91654 0.92731 0.91775 0.88428 0.90604 0.87587 0.77897 0.83635 0.76136 0.77471 0.81799 0.87425 0.90072 0.90819 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.45 9.30 71.98 0.67 1.12 16 2 C -0.43 1.69 5.17 71.98 0.37 2.07 16 3 Si 1.06 -8.32 8.69 68.60 0.60 -7.72 16 4 C -0.41 3.28 5.17 71.98 0.37 3.65 16 5 C -0.15 0.99 9.30 71.98 0.67 1.66 16 6 C -0.43 1.91 5.23 72.26 0.38 2.29 16 7 C 0.11 -0.39 5.85 86.69 0.51 0.11 16 8 N -0.59 1.62 2.60 -822.30 -2.14 -0.52 16 9 C 0.57 1.67 7.02 86.71 0.61 2.28 16 10 O -0.56 -6.26 16.42 -3.98 -0.07 -6.33 16 11 C -0.15 -0.16 3.93 -20.35 -0.08 -0.24 16 12 C 0.13 -0.16 9.06 83.65 0.76 0.60 16 13 N -0.35 -0.61 2.93 -337.70 -0.99 -1.60 16 14 C -0.08 0.07 6.24 41.01 0.26 0.32 16 15 C -0.04 0.28 3.06 71.24 0.22 0.50 16 16 O -0.55 3.38 10.90 -148.98 -1.62 1.75 16 17 Si 1.01 -6.17 26.60 68.60 1.83 -4.35 16 18 H -0.24 1.56 6.84 99.48 0.68 2.24 16 19 H -0.27 0.75 7.11 99.48 0.71 1.46 16 20 H -0.26 0.93 7.11 99.48 0.71 1.64 16 21 C 0.03 0.06 10.44 83.68 0.87 0.93 16 22 N -0.50 -4.26 11.30 -194.09 -2.19 -6.45 16 23 C 0.22 1.50 7.59 134.19 1.02 2.52 16 24 C -0.07 -0.40 6.24 22.43 0.14 -0.26 16 25 Br 0.00 0.00 33.72 -20.37 -0.69 -0.69 16 26 C -0.03 -0.06 9.54 22.55 0.22 0.15 16 27 C 0.11 -0.75 5.80 86.87 0.50 -0.24 16 28 C -0.43 3.13 5.23 72.43 0.38 3.50 16 29 H 0.06 -0.30 7.91 -2.38 -0.02 -0.31 16 30 H 0.04 -0.05 8.14 -2.39 -0.02 -0.07 16 31 H 0.06 -0.24 7.84 -2.39 -0.02 -0.26 16 32 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 33 H 0.07 -0.16 7.96 -2.39 -0.02 -0.18 16 34 H 0.08 -0.56 7.80 -2.39 -0.02 -0.58 16 35 H 0.08 -0.80 7.96 -2.38 -0.02 -0.82 16 36 H 0.05 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.06 -0.56 7.06 -2.38 -0.02 -0.58 16 38 H 0.05 -0.33 8.07 -2.39 -0.02 -0.35 16 39 H 0.06 -0.03 7.99 -2.39 -0.02 -0.05 16 40 H 0.10 -0.61 7.99 -2.39 -0.02 -0.62 16 41 H 0.08 0.10 6.96 -2.39 -0.02 0.08 16 42 H 0.11 -0.94 8.05 -2.39 -0.02 -0.96 16 43 H 0.20 -1.11 6.69 -2.91 -0.02 -1.12 16 44 H 0.15 -1.46 7.96 -2.39 -0.02 -1.48 16 45 H 0.39 -3.90 8.70 -74.05 -0.64 -4.54 16 46 H 0.21 -0.72 6.72 -2.91 -0.02 -0.74 16 47 H 0.16 0.04 8.06 -2.91 -0.02 0.01 16 48 H 0.11 -1.24 8.05 -2.39 -0.02 -1.26 16 49 H 0.08 -0.50 5.48 -2.38 -0.01 -0.52 16 50 H 0.07 -0.37 7.99 -2.39 -0.02 -0.39 16 51 H 0.10 -0.96 7.20 -2.38 -0.02 -0.98 16 Total: 0.00 -19.54 425.08 3.61 -15.93 By element: Atomic # 1 Polarization: -12.03 SS G_CDS: 1.04 Total: -10.99 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: 7.86 Total: 20.97 kcal Atomic # 7 Polarization: -3.25 SS G_CDS: -5.33 Total: -8.58 kcal Atomic # 8 Polarization: -2.88 SS G_CDS: -1.69 Total: -4.57 kcal Atomic # 14 Polarization: -14.49 SS G_CDS: 2.42 Total: -12.07 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.69 Total: -0.69 kcal Total: -19.54 3.61 -15.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_17051536_12335884.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.836 kcal (2) G-P(sol) polarization free energy of solvation -19.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -15.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds