Wall clock time and date at job start Thu Mar 4 2021 14:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 Si 1.86296 * 109.47105 * 2 1 4 4 C 1.86298 * 109.90865 * 298.66609 * 3 2 1 5 5 C 1.53005 * 109.47022 * 298.51902 * 4 3 2 6 6 C 1.87349 * 109.92320 * 177.55561 * 3 2 1 7 7 C 1.53837 * 107.28961 * 193.91394 * 6 3 2 8 8 N 1.46303 * 109.32911 * 53.75236 * 7 6 3 9 9 C 1.34772 * 119.08807 * 107.67416 * 8 7 6 10 10 O 1.21568 * 120.00218 * 6.55701 * 9 8 7 11 11 C 1.47712 * 120.00205 * 186.55887 * 9 8 7 12 12 N 1.31811 * 126.51689 * 7.38954 * 11 9 8 13 13 N 1.28463 * 110.07266 * 179.97438 * 12 11 9 14 14 C 1.46504 * 124.88487 * 179.97438 * 13 12 11 15 15 C 1.35030 * 110.23381 * 359.97438 * 13 12 11 16 16 C 1.50698 * 126.38950 * 180.02562 * 15 13 12 17 17 O 1.42904 * 109.47139 * 330.00233 * 16 15 13 18 18 Si 1.86302 * 109.47497 * 210.00120 * 16 15 13 19 19 H 1.48500 * 109.47019 * 59.99538 * 18 16 15 20 20 H 1.48497 * 109.47172 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.47038 * 300.00074 * 18 16 15 22 22 C 1.35364 * 107.23011 * 359.76312 * 15 13 12 23 23 C 1.46304 * 121.82575 * 287.69319 * 8 7 6 24 24 C 1.53828 * 109.22537 * 72.35799 * 23 8 7 25 25 H 1.09007 * 109.47541 * 63.55741 * 1 2 3 26 26 H 1.08997 * 109.47119 * 183.55963 * 1 2 3 27 27 H 1.09004 * 109.47386 * 303.55788 * 1 2 3 28 28 H 1.09002 * 109.46871 * 240.00349 * 2 1 3 29 29 H 1.08996 * 109.47220 * 119.99984 * 2 1 3 30 30 H 1.09006 * 109.47581 * 58.51851 * 4 3 2 31 31 H 1.09006 * 109.47513 * 178.51843 * 4 3 2 32 32 H 1.08998 * 109.46540 * 297.77063 * 5 4 3 33 33 H 1.08998 * 109.47179 * 57.77299 * 5 4 3 34 34 H 1.09003 * 109.46866 * 177.77205 * 5 4 3 35 35 H 1.09006 * 109.88487 * 313.26663 * 6 3 2 36 36 H 1.08996 * 109.88675 * 74.36020 * 6 3 2 37 37 H 1.08999 * 109.42009 * 293.82188 * 7 6 3 38 38 H 1.08998 * 109.54062 * 173.75504 * 7 6 3 39 39 H 1.09005 * 109.47019 * 90.02615 * 14 13 12 40 40 H 1.09000 * 109.47509 * 210.02192 * 14 13 12 41 41 H 1.08996 * 109.47469 * 330.02769 * 14 13 12 42 42 H 1.09008 * 109.47219 * 89.99870 * 16 15 13 43 43 H 0.96703 * 113.99697 * 299.99394 * 17 16 15 44 44 H 1.07998 * 127.25685 * 180.24278 * 22 15 13 45 45 H 1.09000 * 109.51570 * 312.43164 * 23 8 7 46 46 H 1.09002 * 109.55446 * 192.30328 * 23 8 7 47 47 H 1.09000 * 109.88627 * 186.65714 * 24 23 8 48 48 H 1.09005 * 109.95358 * 65.59610 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 14 2.1510 1.7564 0.0000 4 6 1.5702 2.6346 -1.5369 5 6 2.1379 1.9312 -2.7715 6 6 4.0229 1.7717 0.0751 7 6 4.4547 3.2061 0.4256 8 7 3.7663 3.6351 1.6432 9 6 4.4666 3.7386 2.7900 10 8 5.6736 3.5934 2.7804 11 6 3.7678 4.0282 4.0587 12 7 2.4634 4.0744 4.2428 13 7 2.2008 4.3524 5.4692 14 6 0.8532 4.4841 6.0285 15 6 3.3456 4.5060 6.1687 16 6 3.4602 4.8361 7.6346 17 8 2.3354 5.6212 8.0354 18 14 5.0272 5.7982 7.9339 19 1 4.9946 7.0555 7.1444 20 1 5.1404 6.1229 9.3785 21 1 6.1961 4.9824 7.5174 22 6 4.3711 4.3023 5.3090 23 6 2.3386 3.9547 1.6504 24 6 1.5277 2.6538 1.5219 25 1 -0.3634 0.4576 -0.9202 26 1 -0.3633 -1.0256 0.0638 27 1 -0.3634 0.5681 0.8564 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 0.4811 2.6157 -1.5767 31 1 1.9152 3.6685 -1.5171 32 1 3.2263 1.9848 -2.7517 33 1 1.8253 0.8870 -2.7706 34 1 1.7662 2.4210 -3.6716 35 1 4.3687 1.0829 0.8459 36 1 4.4351 1.4845 -0.8921 37 1 4.1932 3.8740 -0.3951 38 1 5.5322 3.2331 0.5879 39 1 0.5152 3.5143 6.3941 40 1 0.8698 5.1973 6.8526 41 1 0.1717 4.8383 5.2551 42 1 3.4841 3.9132 8.2141 43 1 2.2511 6.4590 7.5600 44 1 5.4275 4.3428 5.5301 45 1 2.1082 4.6116 0.8117 46 1 2.0811 4.4533 2.5849 47 1 0.4690 2.8866 1.4076 48 1 1.6774 2.0334 2.4056 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_17051536_13259642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:54:34 Heat of formation + Delta-G solvation = -10.374367 kcal Electronic energy + Delta-G solvation = -26964.594705 eV Core-core repulsion = 23373.582385 eV Total energy + Delta-G solvation = -3591.012319 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.173 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.90910 -40.86672 -38.10950 -37.38955 -34.48068 -33.72139 -33.13041 -32.65476 -32.00744 -30.46699 -28.41788 -26.82763 -25.02082 -24.20206 -23.62709 -23.31406 -22.62658 -21.89830 -20.31009 -18.75077 -17.95881 -17.58583 -17.11010 -16.95438 -16.32155 -15.92624 -15.86882 -15.55733 -15.40396 -15.23888 -15.04428 -14.91443 -14.49289 -14.29942 -14.19392 -14.11921 -13.76669 -13.56635 -13.44939 -13.39921 -13.13185 -12.86403 -12.74778 -12.50915 -12.42079 -12.27264 -12.11927 -12.05019 -12.00564 -11.73683 -11.60229 -11.26225 -10.83931 -10.42891 -10.32168 -10.28131 -10.15957 -9.84810 -9.66628 0.39801 0.75317 1.12600 1.48395 1.49463 1.62377 1.77484 1.86707 1.91670 1.95766 2.04476 2.23089 2.61733 3.11119 3.27291 3.35181 3.83756 4.18292 4.20270 4.32280 4.33628 4.38786 4.40704 4.46665 4.47640 4.49243 4.52697 4.53376 4.57908 4.57993 4.70158 4.76122 4.78987 4.82318 4.82548 4.93191 5.00514 5.18808 5.21799 5.26410 5.28010 5.33221 5.39297 5.44143 5.52515 5.58307 5.64584 5.79608 6.22034 6.46874 6.77823 7.06391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.421 4.421 3 Si 1.051 2.949 4 C -0.408 4.408 5 C -0.152 4.152 6 C -0.436 4.436 7 C 0.114 3.886 8 N -0.595 5.595 9 C 0.591 3.409 10 O -0.576 6.576 11 C -0.040 4.040 12 N -0.246 5.246 13 N -0.261 5.261 14 C 0.061 3.939 15 C -0.007 4.007 16 C -0.041 4.041 17 O -0.538 6.538 18 Si 0.999 3.001 19 H -0.261 1.261 20 H -0.255 1.255 21 H -0.265 1.265 22 C -0.205 4.205 23 C 0.090 3.910 24 C -0.414 4.414 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.097 0.903 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.137 0.863 41 H 0.106 0.894 42 H 0.144 0.856 43 H 0.394 0.606 44 H 0.160 0.840 45 H 0.090 0.910 46 H 0.120 0.880 47 H 0.102 0.898 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.898 2.317 1.414 7.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.507 4.507 3 Si 1.241 2.759 4 C -0.495 4.495 5 C -0.209 4.209 6 C -0.521 4.521 7 C -0.007 4.007 8 N -0.326 5.326 9 C 0.378 3.622 10 O -0.455 6.455 11 C -0.197 4.197 12 N -0.084 5.084 13 N -0.049 5.049 14 C -0.077 4.077 15 C -0.133 4.133 16 C -0.153 4.153 17 O -0.345 6.345 18 Si 0.821 3.179 19 H -0.185 1.185 20 H -0.178 1.178 21 H -0.190 1.190 22 C -0.233 4.233 23 C -0.032 4.032 24 C -0.501 4.501 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.101 0.899 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.116 0.884 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.155 0.845 41 H 0.124 0.876 42 H 0.162 0.838 43 H 0.244 0.756 44 H 0.178 0.822 45 H 0.108 0.892 46 H 0.137 0.863 47 H 0.120 0.880 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.765 2.099 1.418 7.224 hybrid contribution 0.852 -0.178 -0.145 0.883 sum -5.913 1.921 1.273 6.346 Atomic orbital electron populations 1.21399 0.94794 1.01788 1.02517 1.26126 1.01226 1.19210 1.04117 0.78828 0.64289 0.66231 0.66547 1.25973 1.05761 1.06764 1.10962 1.21432 1.01201 1.00586 0.97675 1.26930 1.23222 0.97501 1.04403 1.21298 0.97877 0.95914 0.85654 1.47972 1.11100 1.65324 1.08241 1.17425 0.85659 0.76144 0.82924 1.90749 1.15028 1.53188 1.86508 1.21746 0.90459 1.11873 0.95597 1.73514 1.15891 1.18361 1.00627 1.45987 1.08683 1.45656 1.04610 1.22981 0.76444 1.06457 1.01805 1.22150 0.86118 1.07495 0.97533 1.24694 1.00944 1.02174 0.87455 1.86468 1.46393 1.35996 1.65657 0.84978 0.74245 0.78559 0.80137 1.18521 1.17833 1.18978 1.21661 1.00689 1.09424 0.91508 1.22143 0.76922 0.97978 1.06141 1.26646 1.05004 1.03560 1.14842 0.91624 0.93618 0.91942 0.90733 0.91896 0.89916 0.90252 0.92262 0.92405 0.93053 0.92305 0.88442 0.88369 0.91098 0.88996 0.84515 0.87568 0.83837 0.75569 0.82245 0.89221 0.86322 0.87958 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.27 9.29 71.98 0.67 0.94 16 2 C -0.42 0.46 5.17 71.98 0.37 0.84 16 3 Si 1.05 -3.54 8.65 68.60 0.59 -2.94 16 4 C -0.41 1.78 5.17 71.98 0.37 2.16 16 5 C -0.15 0.45 9.29 71.98 0.67 1.12 16 6 C -0.44 -0.60 5.23 72.26 0.38 -0.22 16 7 C 0.11 0.47 5.90 86.70 0.51 0.98 16 8 N -0.59 -3.66 2.62 -823.12 -2.15 -5.82 16 9 C 0.59 7.44 7.64 86.75 0.66 8.10 16 10 O -0.58 -11.25 16.21 -3.93 -0.06 -11.32 16 11 C -0.04 -0.37 6.76 42.46 0.29 -0.08 16 12 N -0.25 -1.10 8.40 -48.17 -0.40 -1.51 16 13 N -0.26 0.02 3.70 -355.92 -1.32 -1.30 16 14 C 0.06 -0.49 11.00 127.77 1.41 0.91 16 15 C -0.01 0.00 6.17 41.40 0.26 0.25 16 16 C -0.04 0.21 2.99 71.24 0.21 0.42 16 17 O -0.54 4.25 10.02 -148.98 -1.49 2.76 16 18 Si 1.00 -2.79 26.64 68.60 1.83 -0.96 16 19 H -0.26 0.19 7.11 99.48 0.71 0.90 16 20 H -0.25 0.37 7.11 99.48 0.71 1.08 16 21 H -0.27 -0.22 6.87 99.48 0.68 0.46 16 22 C -0.20 -1.37 9.36 22.41 0.21 -1.16 16 23 C 0.09 0.07 5.40 86.70 0.47 0.53 16 24 C -0.41 0.71 5.21 72.26 0.38 1.09 16 25 H 0.06 -0.24 8.04 -2.38 -0.02 -0.26 16 26 H 0.04 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.06 -0.21 7.87 -2.38 -0.02 -0.23 16 28 H 0.07 -0.09 7.76 -2.39 -0.02 -0.11 16 29 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 30 H 0.08 -0.44 7.96 -2.38 -0.02 -0.46 16 31 H 0.08 -0.40 7.96 -2.38 -0.02 -0.42 16 32 H 0.06 -0.22 7.54 -2.39 -0.02 -0.24 16 33 H 0.06 -0.20 7.71 -2.39 -0.02 -0.22 16 34 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 35 H 0.06 0.32 7.99 -2.38 -0.02 0.30 16 36 H 0.10 -0.11 7.51 -2.39 -0.02 -0.13 16 37 H 0.10 -0.10 8.05 -2.39 -0.02 -0.12 16 38 H 0.07 0.65 6.88 -2.39 -0.02 0.63 16 39 H 0.09 -0.81 8.14 -2.38 -0.02 -0.82 16 40 H 0.14 -1.58 5.00 -2.39 -0.01 -1.59 16 41 H 0.11 -1.09 8.14 -2.39 -0.02 -1.11 16 42 H 0.14 -1.08 7.96 -2.38 -0.02 -1.10 16 43 H 0.39 -5.42 8.39 -74.06 -0.62 -6.04 16 44 H 0.16 1.08 6.87 -2.91 -0.02 1.06 16 45 H 0.09 -0.31 8.05 -2.39 -0.02 -0.33 16 46 H 0.12 0.26 4.24 -29.49 -0.13 0.13 16 47 H 0.10 -0.54 7.99 -2.39 -0.02 -0.56 16 48 H 0.06 0.12 7.99 -2.38 -0.02 0.11 16 Total: 0.00 -19.19 374.19 4.78 -14.41 By element: Atomic # 1 Polarization: -10.15 SS G_CDS: 0.94 Total: -9.21 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 6.85 Total: 15.88 kcal Atomic # 7 Polarization: -4.75 SS G_CDS: -3.87 Total: -8.62 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: -1.56 Total: -8.56 kcal Atomic # 14 Polarization: -6.33 SS G_CDS: 2.42 Total: -3.91 kcal Total: -19.19 4.78 -14.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_17051536_13259642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.039 kcal (2) G-P(sol) polarization free energy of solvation -19.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds