Wall clock time and date at job start Thu Mar 4 2021 15:02:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.28464 * 124.88743 * 2 1 4 4 C 1.31808 * 110.07459 * 180.02562 * 3 2 1 5 5 C 1.47713 * 126.51962 * 180.02562 * 4 3 2 6 6 O 1.21570 * 119.99808 * 179.97438 * 5 4 3 7 7 N 1.34771 * 119.99886 * 359.97230 * 5 4 3 8 8 C 1.46503 * 119.99810 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.46877 * 180.02562 * 8 7 5 10 10 C 1.53004 * 109.46921 * 180.02562 * 9 8 7 11 11 S 1.81399 * 109.47058 * 180.02562 * 10 9 8 12 12 C 1.81401 * 103.00039 * 175.57886 * 11 10 9 13 13 Si 1.86294 * 109.47139 * 184.42285 * 12 11 10 14 14 C 1.86305 * 109.47297 * 59.04501 * 13 12 11 15 15 C 1.86305 * 109.47238 * 179.04679 * 13 12 11 16 16 C 1.86302 * 109.47223 * 299.04798 * 13 12 11 17 17 C 1.41508 * 106.96130 * 359.76851 * 4 3 2 18 18 C 1.35032 * 124.88171 * 180.02562 * 2 1 3 19 19 C 1.50705 * 126.38783 * 359.95958 * 18 2 1 20 20 O 1.42899 * 109.46809 * 29.99921 * 19 18 2 21 21 Si 1.86294 * 109.47193 * 149.99930 * 19 18 2 22 22 H 1.48499 * 109.47229 * 60.00412 * 21 19 18 23 23 H 1.48505 * 109.47119 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.47407 * 299.99810 * 21 19 18 25 25 H 1.08995 * 109.47288 * 269.98106 * 1 2 3 26 26 H 1.08998 * 109.46593 * 29.97766 * 1 2 3 27 27 H 1.08996 * 109.47377 * 149.97382 * 1 2 3 28 28 H 0.96997 * 120.00181 * 0.02562 * 7 5 4 29 29 H 1.08991 * 109.47421 * 300.00379 * 8 7 5 30 30 H 1.09001 * 109.46820 * 60.00962 * 8 7 5 31 31 H 1.08991 * 109.47311 * 300.00331 * 9 8 7 32 32 H 1.09001 * 109.46705 * 60.00776 * 9 8 7 33 33 H 1.09005 * 109.46928 * 300.00079 * 10 9 8 34 34 H 1.08993 * 109.47098 * 60.00079 * 10 9 8 35 35 H 1.09001 * 109.46477 * 304.42409 * 12 11 10 36 36 H 1.08996 * 109.47080 * 64.42141 * 12 11 10 37 37 H 1.09001 * 109.46854 * 60.00115 * 14 13 12 38 38 H 1.08995 * 109.47265 * 180.02562 * 14 13 12 39 39 H 1.08998 * 109.47163 * 300.00606 * 14 13 12 40 40 H 1.08999 * 109.46704 * 59.99967 * 15 13 12 41 41 H 1.09003 * 109.46979 * 180.02562 * 15 13 12 42 42 H 1.08998 * 109.46437 * 300.00185 * 15 13 12 43 43 H 1.08998 * 109.46893 * 57.55544 * 16 13 12 44 44 H 1.09001 * 109.47366 * 177.55500 * 16 13 12 45 45 H 1.09003 * 109.47139 * 297.55632 * 16 13 12 46 46 H 1.08000 * 127.24507 * 180.24373 * 17 4 3 47 47 H 1.09000 * 109.47089 * 270.00406 * 19 18 2 48 48 H 0.96699 * 114.00013 * 60.00184 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4740 0.7168 -0.0006 5 6 4.6274 1.6397 -0.0002 6 8 5.7598 1.1974 -0.0003 7 7 4.4242 2.9720 0.0002 8 6 5.5681 3.8873 0.0011 9 6 5.0650 5.3323 0.0020 10 6 6.2596 6.2882 0.0023 11 16 5.6632 8.0013 0.0042 12 6 7.1933 8.9661 0.1406 13 14 6.7754 10.7750 0.2938 14 6 5.7093 11.0409 1.7984 15 6 8.3457 11.7631 0.4630 16 6 5.8530 11.3303 -1.2266 17 6 3.5271 -0.6973 0.0045 18 6 2.2372 -1.1077 -0.0005 19 6 1.7533 -2.5350 -0.0003 20 8 0.4950 -2.6113 -0.6732 21 14 2.9939 -3.6115 -0.8793 22 1 4.3015 -3.5322 -0.1800 23 1 2.5167 -5.0178 -0.8796 24 1 3.1520 -3.1427 -2.2795 25 1 -0.3633 -0.0003 1.0276 26 1 -0.3632 0.8902 -0.5135 27 1 -0.3634 -0.8897 -0.5142 28 1 3.5207 3.3249 0.0006 29 1 6.1724 3.7128 0.8912 30 1 6.1732 3.7136 -0.8888 31 1 4.4604 5.5071 -0.8878 32 1 4.4602 5.5057 0.8921 33 1 6.8646 6.1135 0.8921 34 1 6.8641 6.1146 -0.8878 35 1 7.7476 8.6452 1.0226 36 1 7.8029 8.8081 -0.7490 37 1 6.2489 10.7160 2.6880 38 1 5.4643 12.0992 1.8878 39 1 4.7905 10.4628 1.6995 40 1 8.9694 11.6076 -0.4173 41 1 8.1011 12.8215 0.5531 42 1 8.8852 11.4382 1.3526 43 1 4.9563 10.7229 -1.3496 44 1 5.5705 12.3774 -1.1181 45 1 6.4926 11.2153 -2.1018 46 1 4.4107 -1.3182 0.0092 47 1 1.6371 -2.8791 1.0274 48 1 0.5234 -2.3198 -1.5947 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_17310320_13259642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:02:18 Heat of formation + Delta-G solvation = -40.955697 kcal Electronic energy + Delta-G solvation = -24578.638697 eV Core-core repulsion = 20919.914899 eV Total energy + Delta-G solvation = -3658.723798 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 345.146 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.88451 -40.61663 -38.11935 -36.97723 -34.51208 -33.76674 -32.57187 -29.97668 -29.06430 -28.68784 -28.33414 -28.30487 -27.42926 -26.47535 -24.11029 -22.78331 -22.25886 -20.92787 -19.17566 -17.68141 -17.62802 -17.45847 -17.16358 -16.94476 -16.60582 -15.99072 -15.93878 -15.67757 -15.29068 -15.24057 -14.76801 -14.72977 -14.41452 -14.37289 -14.09966 -13.95417 -13.75769 -13.62797 -13.49268 -13.44913 -13.25858 -13.12598 -13.09878 -12.99048 -12.59946 -12.54125 -12.41964 -12.09980 -12.06579 -11.81293 -11.47506 -11.28576 -10.86675 -10.78036 -10.74288 -10.62212 -10.41214 -10.07918 -9.98908 -8.58596 0.38181 0.65226 0.73613 1.11838 1.48304 1.49590 1.51601 1.63163 1.80256 1.95170 1.95270 2.05845 2.15185 2.22627 2.65012 3.11083 3.30743 3.34103 3.82434 3.84518 3.88968 4.08091 4.30640 4.31994 4.33921 4.37944 4.45861 4.50642 4.52083 4.57617 4.64198 4.78736 4.79598 4.80913 4.81675 4.85912 4.86435 4.87545 4.95521 4.95664 5.02869 5.16165 5.27002 5.55869 5.65105 5.65825 5.66412 6.28880 6.45331 6.77063 7.02604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.258 5.258 3 N -0.262 5.262 4 C -0.041 4.041 5 C 0.603 3.397 6 O -0.570 6.570 7 N -0.707 5.707 8 C 0.126 3.874 9 C -0.104 4.104 10 C -0.086 4.086 11 S -0.276 6.276 12 C -0.386 4.386 13 Si 1.082 2.918 14 C -0.460 4.460 15 C -0.450 4.450 16 C -0.462 4.462 17 C -0.202 4.202 18 C -0.009 4.009 19 C -0.043 4.043 20 O -0.539 6.539 21 Si 1.000 3.000 22 H -0.262 1.262 23 H -0.254 1.254 24 H -0.263 1.263 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.138 0.862 28 H 0.416 0.584 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.069 0.931 46 H 0.164 0.836 47 H 0.146 0.854 48 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 0.293 -0.478 3.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.047 5.047 3 N -0.101 5.101 4 C -0.199 4.199 5 C 0.388 3.612 6 O -0.448 6.448 7 N -0.359 5.359 8 C 0.001 3.999 9 C -0.143 4.143 10 C -0.235 4.235 11 S -0.049 6.049 12 C -0.578 4.578 13 Si 1.273 2.727 14 C -0.567 4.567 15 C -0.559 4.559 16 C -0.568 4.568 17 C -0.230 4.230 18 C -0.135 4.135 19 C -0.154 4.154 20 O -0.346 6.346 21 Si 0.822 3.178 22 H -0.186 1.186 23 H -0.178 1.178 24 H -0.187 1.187 25 H 0.112 0.888 26 H 0.122 0.878 27 H 0.156 0.844 28 H 0.253 0.747 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.083 0.917 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.182 0.818 47 H 0.163 0.837 48 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.489 0.513 -0.411 4.537 hybrid contribution 1.422 -0.429 -0.115 1.490 sum -3.067 0.084 -0.526 3.112 Atomic orbital electron populations 1.22985 0.70265 1.08101 1.06286 1.45757 1.09139 1.01599 1.48204 1.73466 1.02494 1.14923 1.19168 1.21738 0.91016 0.94258 1.12862 1.17054 0.86399 0.82105 0.75653 1.90785 1.24004 1.77857 1.52117 1.45757 1.11478 1.04782 1.73885 1.21384 0.88089 0.87800 1.02610 1.21400 0.97335 0.91019 1.04563 1.23331 1.00762 0.93578 1.05807 1.86914 1.16768 1.03562 1.97685 1.28245 1.01260 1.20207 1.08044 0.77864 0.66502 0.62216 0.66146 1.26271 1.10195 1.04616 1.15628 1.26117 1.15475 1.09239 1.05035 1.26282 1.08735 1.05822 1.15984 1.21698 0.97547 0.93798 1.10005 1.22214 0.90579 0.92656 1.08047 1.24742 0.94165 0.91289 1.05211 1.86464 1.29185 1.88546 1.30397 0.84961 0.76201 0.77834 0.78816 1.18613 1.17768 1.18732 0.88808 0.87840 0.84396 0.74709 0.91365 0.91345 0.89906 0.89811 0.89328 0.89420 0.87909 0.88074 0.91203 0.91076 0.91580 0.90802 0.90563 0.90797 0.91664 0.91035 0.91183 0.81841 0.83657 0.75592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.44 11.00 127.77 1.41 0.96 16 2 N -0.26 -0.17 3.70 -355.94 -1.32 -1.48 16 3 N -0.26 -1.38 11.67 -48.17 -0.56 -1.95 16 4 C -0.04 -0.35 7.13 42.46 0.30 -0.05 16 5 C 0.60 6.36 7.82 86.75 0.68 7.03 16 6 O -0.57 -9.81 16.93 -3.94 -0.07 -9.87 16 7 N -0.71 -2.96 5.55 -466.11 -2.59 -5.55 16 8 C 0.13 0.22 5.67 86.38 0.49 0.71 16 9 C -0.10 0.17 5.34 30.60 0.16 0.34 16 10 C -0.09 0.09 5.94 71.98 0.43 0.52 16 11 S -0.28 -0.38 20.84 -56.49 -1.18 -1.56 16 12 C -0.39 1.05 5.14 113.37 0.58 1.63 16 13 Si 1.08 -5.03 12.30 68.60 0.84 -4.19 16 14 C -0.46 0.67 8.65 113.37 0.98 1.65 16 15 C -0.45 1.98 8.65 113.37 0.98 2.96 16 16 C -0.46 0.64 8.65 113.37 0.98 1.62 16 17 C -0.20 -1.22 9.35 22.41 0.21 -1.01 16 18 C -0.01 -0.01 6.17 41.40 0.26 0.25 16 19 C -0.04 0.22 2.99 71.24 0.21 0.44 16 20 O -0.54 4.11 10.02 -148.98 -1.49 2.61 16 21 Si 1.00 -3.13 26.64 68.60 1.83 -1.30 16 22 H -0.26 0.01 6.87 99.48 0.68 0.69 16 23 H -0.25 0.46 7.11 99.48 0.71 1.17 16 24 H -0.26 0.20 7.11 99.48 0.71 0.90 16 25 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 26 H 0.10 -0.91 8.14 -2.39 -0.02 -0.93 16 27 H 0.14 -1.50 5.00 -2.39 -0.01 -1.51 16 28 H 0.42 0.32 8.20 -92.71 -0.76 -0.44 16 29 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.08 -0.14 8.14 -2.39 -0.02 -0.16 16 32 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.09 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 35 H 0.10 -0.42 7.96 -2.39 -0.02 -0.44 16 36 H 0.10 -0.39 7.96 -2.39 -0.02 -0.41 16 37 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 38 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 39 H 0.06 0.05 7.96 -2.39 -0.02 0.03 16 40 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 41 H 0.08 -0.32 7.96 -2.39 -0.02 -0.34 16 42 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 43 H 0.06 0.06 7.96 -2.39 -0.02 0.04 16 44 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 45 H 0.07 -0.12 7.96 -2.39 -0.02 -0.13 16 46 H 0.16 0.91 6.87 -2.91 -0.02 0.89 16 47 H 0.15 -1.15 7.96 -2.39 -0.02 -1.17 16 48 H 0.39 -5.24 8.39 -74.06 -0.62 -5.86 16 Total: 0.00 -19.47 410.41 3.44 -16.03 By element: Atomic # 1 Polarization: -10.08 SS G_CDS: 0.30 Total: -9.78 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 7.67 Total: 17.04 kcal Atomic # 7 Polarization: -4.52 SS G_CDS: -4.47 Total: -8.98 kcal Atomic # 8 Polarization: -5.70 SS G_CDS: -1.56 Total: -7.26 kcal Atomic # 14 Polarization: -8.16 SS G_CDS: 2.67 Total: -5.49 kcal Atomic # 16 Polarization: -0.38 SS G_CDS: -1.18 Total: -1.56 kcal Total: -19.47 3.44 -16.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_17310320_13259642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.923 kcal (2) G-P(sol) polarization free energy of solvation -19.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds