Wall clock time and date at job start Thu Mar 4 2021 16:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 N 1.28463 * 124.88847 * 2 1 4 4 C 1.31804 * 110.07865 * 180.13491 * 3 2 1 5 5 C 1.47711 * 126.52066 * 179.88311 * 4 3 2 6 6 O 1.21573 * 120.00075 * 179.68683 * 5 4 3 7 7 N 1.34777 * 119.99927 * 359.41177 * 5 4 3 8 8 C 1.46499 * 120.00195 * 180.27919 * 7 5 4 9 9 C 1.52997 * 109.47551 * 179.97438 * 8 7 5 10 10 H 1.09007 * 112.84558 * 314.66613 * 9 8 7 11 11 C 1.53782 * 113.61595 * 85.85602 * 9 8 7 12 12 C 1.53951 * 87.01616 * 139.95432 * 11 9 8 13 13 H 1.09009 * 113.61456 * 89.20285 * 12 11 9 14 14 N 1.46496 * 113.66889 * 220.06869 * 12 11 9 15 15 C 1.35310 * 125.86888 * 12.27832 * 14 12 11 16 16 C 1.35347 * 106.18170 * 179.90616 * 15 14 12 17 17 N 1.33777 * 106.49265 * 0.35141 * 16 15 14 18 18 N 1.28633 * 108.88575 * 359.77094 * 17 16 15 19 19 C 1.53775 * 113.61816 * 183.47030 * 9 8 7 20 20 C 1.41506 * 106.95999 * 359.61614 * 4 3 2 21 21 C 1.35035 * 124.88525 * 179.70168 * 2 1 3 22 22 C 1.50704 * 126.38408 * 359.97438 * 21 2 1 23 23 O 1.42895 * 109.47208 * 30.01313 * 22 21 2 24 24 Si 1.86307 * 109.47255 * 150.01554 * 22 21 2 25 25 H 1.09005 * 109.47106 * 270.29389 * 1 2 3 26 26 H 1.08998 * 109.47480 * 30.29812 * 1 2 3 27 27 H 1.09000 * 109.47286 * 150.29458 * 1 2 3 28 28 H 0.97000 * 119.99736 * 0.27192 * 7 5 4 29 29 H 1.08998 * 109.46795 * 299.99885 * 8 7 5 30 30 H 1.09002 * 109.47196 * 59.99076 * 8 7 5 31 31 H 1.08998 * 113.61363 * 254.53358 * 11 9 8 32 32 H 1.08994 * 113.61041 * 25.44064 * 11 9 8 33 33 H 1.08006 * 126.90895 * 0.02562 * 15 14 12 34 34 H 1.07996 * 126.75653 * 180.12742 * 16 15 14 35 35 H 1.09001 * 113.61217 * 334.56710 * 19 9 8 36 36 H 1.08997 * 113.61787 * 105.46438 * 19 9 8 37 37 H 1.08004 * 127.24407 * 180.18748 * 20 4 3 38 38 H 1.08999 * 109.46737 * 270.01581 * 22 21 2 39 39 H 0.96699 * 114.00167 * 60.00546 * 23 22 21 40 40 H 1.48492 * 110.00057 * 179.97438 * 24 22 21 41 41 H 1.48493 * 109.99659 * 301.31923 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.1997 1.0537 0.0000 4 6 3.4740 0.7168 -0.0029 5 6 4.6273 1.6398 -0.0063 6 8 5.7597 1.1976 -0.0031 7 7 4.4241 2.9721 -0.0186 8 6 5.5679 3.8875 -0.0282 9 6 5.0648 5.3323 -0.0420 10 1 4.2583 5.4928 -0.7575 11 6 4.7669 5.8943 1.3582 12 6 5.3915 7.2150 0.8729 13 1 4.6747 7.8923 0.4084 14 7 6.2278 7.8746 1.8788 15 6 6.6600 7.3226 3.0361 16 6 7.3977 8.2736 3.6552 17 7 7.3745 9.3494 2.8604 18 7 6.6732 9.0806 1.8161 19 6 6.1903 6.3757 -0.1380 20 6 3.5271 -0.6972 0.0041 21 6 2.2373 -1.1077 0.0058 22 6 1.7533 -2.5349 0.0137 23 8 0.4953 -2.6151 -0.6592 24 14 2.9944 -3.6164 -0.8587 25 1 -0.3633 0.0053 1.0277 26 1 -0.3634 0.8873 -0.5184 27 1 -0.3634 -0.8926 -0.5092 28 1 3.5205 3.3249 -0.0213 29 1 6.1733 3.7216 0.8629 30 1 6.1719 3.7049 -0.9170 31 1 3.7026 5.9694 1.5811 32 1 5.3337 5.4093 2.1529 33 1 6.4585 6.3233 3.3931 34 1 7.9024 8.1831 4.6056 35 1 7.1470 6.0225 0.2469 36 1 6.2736 6.8389 -1.1212 37 1 4.4108 -1.3181 0.0069 38 1 1.6368 -2.8732 1.0433 39 1 0.5242 -2.3288 -1.5824 40 1 2.5291 -5.0265 -0.8571 41 1 3.1860 -3.1458 -2.2540 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_17567720_13259642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 16:58:43 Heat of formation + Delta-G solvation = 148.387758 kcal Electronic energy + Delta-G solvation = -25781.579907 eV Core-core repulsion = 21896.702598 eV Total energy + Delta-G solvation = -3884.877309 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.25066 -43.83091 -40.88597 -39.90305 -38.24762 -35.87637 -34.43446 -34.01533 -32.63406 -32.00350 -29.73007 -28.22619 -26.98508 -26.72680 -25.43494 -23.83959 -23.60572 -22.25953 -22.19921 -21.15572 -20.38193 -19.28824 -18.63123 -17.59077 -17.52213 -17.36999 -17.16357 -16.98158 -16.49500 -16.18501 -15.94780 -15.77907 -15.76098 -15.25023 -14.96544 -14.75758 -14.49025 -14.11513 -13.64779 -13.62108 -13.53625 -13.40096 -13.23755 -12.80883 -12.63607 -12.53473 -12.24545 -11.99807 -11.85927 -11.77735 -11.72784 -11.27998 -11.01113 -10.95448 -10.36526 -10.32631 -10.00658 -9.95213 -4.88590 0.45536 0.63458 0.82863 1.22448 1.44144 1.56322 1.59982 1.68289 1.94910 2.12208 2.32535 3.02352 3.04603 3.22898 3.34088 3.35247 3.53106 3.57992 3.68205 3.95799 4.06461 4.20965 4.24706 4.30013 4.32611 4.35544 4.42682 4.45035 4.51640 4.58745 4.66559 4.68438 4.73044 4.75271 4.80852 4.85201 4.95744 5.17453 5.25615 5.27765 5.39392 5.67830 5.71157 6.24745 6.38959 6.82975 7.13149 7.51336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.064 3.936 2 N -0.265 5.265 3 N -0.264 5.264 4 C -0.040 4.040 5 C 0.603 3.397 6 O -0.566 6.566 7 N -0.705 5.705 8 C 0.131 3.869 9 C -0.101 4.101 10 H 0.127 0.873 11 C -0.128 4.128 12 C 0.102 3.898 13 H 0.143 0.857 14 N -0.275 5.275 15 C -0.037 4.037 16 C -0.068 4.068 17 N -0.319 5.319 18 N -0.129 5.129 19 C -0.130 4.130 20 C -0.187 4.187 21 C -0.015 4.015 22 C -0.044 4.044 23 O -0.536 6.536 24 Si 0.783 3.217 25 H 0.093 0.907 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.416 0.584 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.227 0.773 34 H 0.212 0.788 35 H 0.090 0.910 36 H 0.094 0.906 37 H 0.181 0.819 38 H 0.145 0.855 39 H 0.390 0.610 40 H -0.285 1.285 41 H -0.293 1.293 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -5.872 0.147 8.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.054 5.054 3 N -0.102 5.102 4 C -0.198 4.198 5 C 0.388 3.612 6 O -0.444 6.444 7 N -0.357 5.357 8 C 0.008 3.992 9 C -0.120 4.120 10 H 0.145 0.855 11 C -0.166 4.166 12 C 0.002 3.998 13 H 0.161 0.839 14 N -0.069 5.069 15 C -0.188 4.188 16 C -0.226 4.226 17 N -0.184 5.184 18 N -0.108 5.108 19 C -0.169 4.169 20 C -0.215 4.215 21 C -0.140 4.140 22 C -0.154 4.154 23 O -0.344 6.344 24 Si 0.686 3.314 25 H 0.111 0.889 26 H 0.122 0.878 27 H 0.147 0.853 28 H 0.253 0.747 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.124 0.876 33 H 0.243 0.757 34 H 0.229 0.771 35 H 0.108 0.892 36 H 0.113 0.887 37 H 0.198 0.802 38 H 0.162 0.838 39 H 0.240 0.760 40 H -0.212 1.212 41 H -0.220 1.220 Dipole moment (debyes) X Y Z Total from point charges -6.596 -4.644 -0.798 8.106 hybrid contribution -0.677 -0.741 -0.090 1.008 sum -7.273 -5.385 -0.888 9.093 Atomic orbital electron populations 1.22876 0.70882 1.07624 1.06079 1.45688 1.08931 1.01914 1.48855 1.73439 1.02681 1.14767 1.19282 1.21831 0.90930 0.94474 1.12562 1.17003 0.86233 0.82207 0.75751 1.90805 1.23842 1.77839 1.51885 1.45724 1.11419 1.04606 1.73920 1.21394 0.87955 0.87071 1.02751 1.22505 0.99412 0.91747 0.98343 0.85498 1.23639 1.03749 0.91205 0.98038 1.23813 0.93333 0.94075 0.88604 0.83929 1.47825 1.33460 1.09355 1.16223 1.24184 1.02360 1.03858 0.88420 1.24228 1.04669 0.90068 1.03622 1.75081 1.15910 1.26669 1.00749 1.78253 1.13507 0.99594 1.19409 1.23395 0.98395 0.95101 0.99995 1.21728 0.97369 0.93684 1.08743 1.22117 0.91040 0.92059 1.08756 1.24848 0.93189 0.92244 1.05125 1.86558 1.29553 1.88388 1.29940 0.93189 0.83915 0.74706 0.79543 0.88881 0.87822 0.85335 0.74669 0.90990 0.91405 0.87545 0.87566 0.75653 0.77111 0.89161 0.88688 0.80157 0.83759 0.75960 1.21178 1.21990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 -0.53 11.00 127.77 1.41 0.88 16 2 N -0.26 0.44 3.70 -355.94 -1.32 -0.88 16 3 N -0.26 -0.39 11.67 -48.17 -0.56 -0.96 16 4 C -0.04 -0.15 7.13 42.46 0.30 0.16 16 5 C 0.60 2.87 7.83 86.75 0.68 3.55 16 6 O -0.57 -6.51 16.93 -3.95 -0.07 -6.58 16 7 N -0.70 1.85 5.55 -466.10 -2.59 -0.74 16 8 C 0.13 -0.70 5.50 86.38 0.47 -0.22 16 9 C -0.10 1.08 3.75 -10.27 -0.04 1.04 16 10 H 0.13 -1.70 8.14 -2.38 -0.02 -1.72 16 11 C -0.13 1.43 6.99 31.18 0.22 1.65 16 12 C 0.10 -0.63 4.96 45.58 0.23 -0.40 16 13 H 0.14 -1.07 8.14 -2.38 -0.02 -1.09 16 14 N -0.27 -0.47 3.53 -324.40 -1.15 -1.61 16 15 C -0.04 0.05 10.78 83.49 0.90 0.95 16 16 C -0.07 -0.26 12.05 83.73 1.01 0.75 16 17 N -0.32 -4.00 12.41 -58.26 -0.72 -4.72 16 18 N -0.13 -1.39 13.17 37.02 0.49 -0.91 16 19 C -0.13 0.99 7.44 31.12 0.23 1.22 16 20 C -0.19 -0.21 9.35 22.41 0.21 0.00 16 21 C -0.01 0.03 6.18 41.40 0.26 0.29 16 22 C -0.04 0.27 2.99 71.24 0.21 0.48 16 23 O -0.54 3.39 10.02 -148.98 -1.49 1.89 16 24 Si 0.78 -3.94 31.24 68.60 2.14 -1.80 16 25 H 0.09 -0.87 8.14 -2.38 -0.02 -0.89 16 26 H 0.10 -1.05 8.14 -2.39 -0.02 -1.07 16 27 H 0.13 -1.36 5.00 -2.39 -0.01 -1.37 16 28 H 0.42 -2.60 8.20 -92.71 -0.76 -3.36 16 29 H 0.07 -0.30 7.88 -2.39 -0.02 -0.32 16 30 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.11 -1.41 8.14 -2.39 -0.02 -1.43 16 32 H 0.11 -1.27 6.11 -2.39 -0.01 -1.28 16 33 H 0.23 -2.34 6.74 -2.91 -0.02 -2.36 16 34 H 0.21 -0.57 8.06 -2.91 -0.02 -0.60 16 35 H 0.09 -0.50 8.10 -2.39 -0.02 -0.52 16 36 H 0.09 -0.74 8.14 -2.39 -0.02 -0.76 16 37 H 0.18 -0.35 7.03 -2.91 -0.02 -0.37 16 38 H 0.14 -1.26 7.96 -2.39 -0.02 -1.28 16 39 H 0.39 -4.31 8.39 -74.06 -0.62 -4.93 16 40 H -0.29 -0.30 7.11 99.48 0.71 0.41 16 41 H -0.29 -0.40 7.11 99.48 0.71 0.31 16 Total: 0.00 -29.37 348.82 0.57 -28.80 By element: Atomic # 1 Polarization: -22.60 SS G_CDS: -0.25 Total: -22.85 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: 6.09 Total: 10.34 kcal Atomic # 7 Polarization: -3.96 SS G_CDS: -5.85 Total: -9.81 kcal Atomic # 8 Polarization: -3.13 SS G_CDS: -1.56 Total: -4.69 kcal Atomic # 14 Polarization: -3.94 SS G_CDS: 2.14 Total: -1.80 kcal Total: -29.37 0.57 -28.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_17567720_13259642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.189 kcal (2) G-P(sol) polarization free energy of solvation -29.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds