Wall clock time and date at job start Thu Mar 4 2021 14:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 108.57899 * 2 1 4 4 O 1.42100 * 108.57567 * 228.97496 * 2 1 3 5 5 C 1.81396 * 101.92220 * 114.48555 * 2 1 3 6 6 H 1.08998 * 112.85352 * 53.80550 * 5 2 1 7 7 C 1.53786 * 113.61664 * 184.99881 * 5 2 1 8 8 C 1.53775 * 87.08166 * 140.06563 * 7 5 2 9 9 H 1.09003 * 113.61598 * 219.93632 * 8 7 5 10 10 C 1.53005 * 113.61178 * 89.11925 * 8 7 5 11 11 N 1.46501 * 109.46903 * 175.00040 * 10 8 7 12 12 C 1.34782 * 120.00082 * 180.02562 * 11 10 8 13 13 O 1.21588 * 119.99935 * 359.97438 * 12 11 10 14 14 C 1.47571 * 119.99949 * 179.97438 * 12 11 10 15 15 C 1.36496 * 120.01083 * 179.97438 * 14 12 11 16 16 N 1.35942 * 120.50979 * 179.97438 * 15 14 12 17 17 C 1.36999 * 132.41291 * 180.02562 * 16 15 14 18 18 C 1.50699 * 126.43070 * 359.94123 * 17 16 15 19 19 O 1.42892 * 109.47249 * 330.00296 * 18 17 16 20 20 Si 1.86298 * 109.47032 * 209.99681 * 18 17 16 21 21 C 1.35014 * 107.14196 * 180.20684 * 17 16 15 22 22 N 1.33592 * 108.65210 * 359.62570 * 21 17 16 23 23 C 1.32414 * 109.22175 * 0.38411 * 22 21 17 24 24 C 1.41252 * 132.11507 * 179.78989 * 23 22 21 25 25 Br 1.89103 * 120.25247 * 359.94924 * 24 23 22 26 26 C 1.35695 * 119.49333 * 179.97438 * 24 23 22 27 27 C 1.53776 * 87.08190 * 334.56828 * 8 7 5 28 28 H 1.09004 * 109.46663 * 305.51347 * 1 2 3 29 29 H 1.08996 * 109.47045 * 65.50855 * 1 2 3 30 30 H 1.08991 * 109.47281 * 185.51372 * 1 2 3 31 31 H 1.09002 * 113.61428 * 25.51514 * 7 5 2 32 32 H 1.09000 * 113.61441 * 254.61735 * 7 5 2 33 33 H 1.08995 * 109.47397 * 54.99850 * 10 8 7 34 34 H 1.09002 * 109.46758 * 294.99421 * 10 8 7 35 35 H 0.97000 * 120.00059 * 359.97438 * 11 10 8 36 36 H 1.08004 * 119.74354 * 0.02562 * 15 14 12 37 37 H 1.09004 * 109.46453 * 90.00364 * 18 17 16 38 38 H 0.96703 * 114.00176 * 299.99748 * 19 18 17 39 39 H 1.48506 * 109.99834 * 58.68765 * 20 18 17 40 40 H 1.48502 * 110.00011 * 180.02562 * 20 18 17 41 41 H 1.07993 * 125.67179 * 179.74221 * 21 17 16 42 42 H 1.07998 * 120.23780 * 179.97438 * 26 24 23 43 43 H 1.09000 * 113.61502 * 139.98185 * 27 8 7 44 44 H 1.09002 * 113.61678 * 270.88297 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1887 -0.7356 1.6152 6 1 1.6958 -1.6957 1.7677 7 6 3.6894 -0.7535 1.9508 8 6 3.2920 -0.3814 3.3889 9 1 3.9583 0.3468 3.8515 10 6 3.0235 -1.5932 4.2836 11 7 2.7712 -1.1419 5.6543 12 6 2.5094 -2.0420 6.6228 13 8 2.4822 -3.2285 6.3587 14 6 2.2558 -1.5874 8.0036 15 6 1.9902 -2.4987 8.9845 16 7 1.7556 -2.0912 10.2600 17 6 1.4710 -2.7767 11.4115 18 6 1.3371 -4.2710 11.5535 19 8 0.8613 -4.8254 10.3255 20 14 0.1307 -4.6593 12.9190 21 6 1.3271 -1.8619 12.3940 22 7 1.5233 -0.6456 11.8774 23 6 1.7817 -0.7580 10.5836 24 6 2.0544 0.2032 9.5851 25 35 2.0924 2.0433 10.0191 26 6 2.2885 -0.2040 8.3120 27 6 2.0174 0.2386 2.7926 28 1 -0.3633 0.5970 0.8366 29 1 -0.3633 0.4260 -0.9352 30 1 -0.3633 -1.0228 0.0987 31 1 4.2602 0.0225 1.4408 32 1 4.1443 -1.7403 1.8649 33 1 3.8912 -2.2528 4.2721 34 1 2.1520 -2.1327 3.9125 35 1 2.7933 -0.1953 5.8651 36 1 1.9670 -3.5517 8.7455 37 1 2.3091 -4.7015 11.7941 38 1 -0.0012 -4.4867 10.0490 39 1 -1.1901 -4.0507 12.6181 40 1 -0.0098 -6.1300 13.0696 41 1 1.0943 -2.0777 13.4262 42 1 2.4979 0.5206 7.5390 43 1 1.1224 0.0528 3.3864 44 1 2.1310 1.2860 2.5128 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_17836384_12335884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:55:35 Heat of formation + Delta-G solvation = -6.913781 kcal Electronic energy + Delta-G solvation = -32279.911671 eV Core-core repulsion = 27568.321434 eV Total energy + Delta-G solvation = -4711.590238 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 444.023 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -44.26349 -41.35208 -40.10962 -38.52923 -38.09918 -37.99765 -37.05313 -35.85331 -35.17071 -32.70510 -31.84280 -30.46135 -30.28149 -29.31193 -26.90965 -26.81850 -25.97720 -24.56504 -24.08452 -22.57227 -21.90329 -20.57030 -19.73560 -19.50534 -18.61943 -18.36312 -18.23527 -17.78466 -17.52082 -17.13310 -16.95223 -16.84860 -16.46361 -16.22522 -16.04645 -15.94948 -15.73546 -15.32012 -14.90387 -14.80573 -14.66826 -14.13584 -14.11405 -13.99153 -13.92964 -13.61124 -13.46511 -13.36706 -13.23912 -13.20126 -13.06264 -13.03089 -12.76832 -12.72652 -12.15834 -11.97098 -11.64682 -11.61521 -11.52392 -11.39323 -11.38011 -11.27367 -11.06911 -10.91471 -10.31470 -10.00982 -9.08921 -4.94260 -0.91647 -0.91185 -0.38219 0.19515 0.96032 1.13010 1.40418 1.66824 1.80780 1.83216 1.90066 2.00635 2.22174 2.64227 2.81892 2.92372 2.98555 3.13212 3.28750 3.35221 3.42150 3.43532 3.46774 3.57505 3.60714 3.85950 4.07364 4.12590 4.17166 4.26162 4.30229 4.38379 4.40389 4.43773 4.49019 4.60595 4.63701 4.75253 4.88306 4.93866 4.95224 4.96205 4.98275 5.19029 5.32234 5.32517 5.56336 6.18001 6.28950 6.49647 6.95356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.416 3.584 3 O -0.979 6.979 4 O -0.995 6.995 5 C -0.592 4.592 6 H 0.177 0.823 7 C -0.112 4.112 8 C -0.106 4.106 9 H 0.113 0.887 10 C 0.134 3.866 11 N -0.703 5.703 12 C 0.578 3.422 13 O -0.567 6.567 14 C -0.168 4.168 15 C 0.155 3.845 16 N -0.359 5.359 17 C -0.090 4.090 18 C -0.053 4.053 19 O -0.547 6.547 20 Si 0.815 3.185 21 C 0.045 3.955 22 N -0.493 5.493 23 C 0.224 3.776 24 C -0.080 4.080 25 Br 0.006 6.994 26 C -0.025 4.025 27 C -0.110 4.110 28 H 0.154 0.846 29 H 0.128 0.872 30 H 0.148 0.852 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.417 0.583 36 H 0.189 0.811 37 H 0.138 0.862 38 H 0.386 0.614 39 H -0.289 1.289 40 H -0.290 1.290 41 H 0.228 0.772 42 H 0.188 0.812 43 H 0.110 0.890 44 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.498 0.831 3.662 4.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.605 3.395 3 O -0.976 6.976 4 O -0.992 6.992 5 C -0.704 4.704 6 H 0.195 0.805 7 C -0.151 4.151 8 C -0.126 4.126 9 H 0.131 0.869 10 C 0.011 3.989 11 N -0.356 5.356 12 C 0.364 3.636 13 O -0.447 6.447 14 C -0.175 4.175 15 C 0.029 3.971 16 N -0.032 5.032 17 C -0.200 4.200 18 C -0.160 4.160 19 O -0.354 6.354 20 Si 0.717 3.283 21 C -0.104 4.104 22 N -0.212 5.212 23 C -0.021 4.021 24 C -0.163 4.163 25 Br 0.092 6.908 26 C -0.051 4.051 27 C -0.148 4.148 28 H 0.172 0.828 29 H 0.147 0.853 30 H 0.167 0.833 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.256 0.744 36 H 0.206 0.794 37 H 0.155 0.845 38 H 0.236 0.764 39 H -0.215 1.215 40 H -0.217 1.217 41 H 0.244 0.756 42 H 0.205 0.795 43 H 0.129 0.871 44 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.141 0.989 3.648 4.343 hybrid contribution -0.840 -1.030 -1.309 1.865 sum -2.981 -0.041 2.339 3.789 Atomic orbital electron populations 1.30105 1.22860 1.13565 1.13019 1.07624 0.79714 0.74487 0.77701 1.93550 1.80828 1.36063 1.87209 1.93543 1.80984 1.67798 1.56907 1.31688 1.07634 1.13406 1.17680 0.80506 1.22734 0.91135 1.04746 0.96517 1.22360 0.98739 0.97266 0.94227 0.86937 1.21286 1.02294 0.96057 0.79264 1.45670 1.70739 1.10655 1.08508 1.17511 0.76582 0.85489 0.83988 1.90860 1.53128 1.17649 1.83065 1.19259 1.10862 0.93069 0.94352 1.22219 0.91921 1.02247 0.80741 1.42740 1.44400 1.08512 1.07584 1.22399 1.15300 0.97255 0.85092 1.25190 1.09803 0.85062 0.95970 1.86591 1.40776 1.68866 1.39197 0.93438 0.75119 0.78182 0.81602 1.23027 1.00330 0.85948 1.01127 1.70848 1.20577 1.25953 1.03837 1.20747 1.05801 0.82590 0.92996 1.20599 1.10277 0.92001 0.93376 1.96851 1.97370 1.01635 1.94988 1.21373 0.93790 0.94867 0.95041 1.22956 1.00243 0.98176 0.93458 0.82812 0.85322 0.83316 0.88438 0.88604 0.91086 0.90345 0.74408 0.79378 0.84450 0.76435 1.21549 1.21717 0.75608 0.79522 0.87147 0.87055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.57 10.62 113.37 1.20 7.77 16 2 S 2.42 -7.51 5.30 -56.49 -0.30 -7.81 16 3 O -0.98 -4.34 17.35 -127.37 -2.21 -6.55 16 4 O -1.00 -7.18 18.10 -127.37 -2.30 -9.49 16 5 C -0.59 5.81 3.81 31.12 0.12 5.93 16 6 H 0.18 -2.56 7.72 -2.39 -0.02 -2.58 16 7 C -0.11 0.88 7.26 31.12 0.23 1.11 16 8 C -0.11 1.19 3.94 -10.27 -0.04 1.15 16 9 H 0.11 -1.52 8.14 -2.39 -0.02 -1.54 16 10 C 0.13 -1.11 5.35 86.38 0.46 -0.64 16 11 N -0.70 5.83 5.51 -466.22 -2.57 3.26 16 12 C 0.58 -0.74 7.76 86.70 0.67 -0.07 16 13 O -0.57 -3.85 16.27 -3.99 -0.06 -3.92 16 14 C -0.17 0.35 5.84 -20.35 -0.12 0.23 16 15 C 0.16 0.10 9.91 83.65 0.83 0.93 16 16 N -0.36 -0.77 2.93 -337.71 -0.99 -1.76 16 17 C -0.09 0.04 6.25 41.01 0.26 0.30 16 18 C -0.05 0.21 3.06 71.24 0.22 0.43 16 19 O -0.55 0.56 10.90 -148.98 -1.62 -1.06 16 20 Si 0.82 -5.00 31.17 68.60 2.14 -2.86 16 21 C 0.04 -0.01 10.44 83.68 0.87 0.86 16 22 N -0.49 -2.95 11.30 -194.10 -2.19 -5.15 16 23 C 0.22 1.02 7.59 134.19 1.02 2.04 16 24 C -0.08 -0.06 6.24 22.42 0.14 0.08 16 25 Br 0.01 0.00 33.72 -20.37 -0.69 -0.68 16 26 C -0.02 0.12 9.26 22.55 0.21 0.33 16 27 C -0.11 1.37 7.16 31.12 0.22 1.60 16 28 H 0.15 -2.30 8.14 -2.39 -0.02 -2.32 16 29 H 0.13 -1.17 8.14 -2.39 -0.02 -1.19 16 30 H 0.15 -2.07 8.14 -2.40 -0.02 -2.09 16 31 H 0.10 -0.64 8.10 -2.39 -0.02 -0.66 16 32 H 0.10 -0.78 8.10 -2.39 -0.02 -0.80 16 33 H 0.07 -0.39 8.14 -2.39 -0.02 -0.41 16 34 H 0.08 -0.62 7.39 -2.39 -0.02 -0.64 16 35 H 0.42 -5.92 6.51 -92.71 -0.60 -6.53 16 36 H 0.19 0.25 6.19 -2.91 -0.02 0.23 16 37 H 0.14 -0.83 7.96 -2.38 -0.02 -0.85 16 38 H 0.39 -2.08 8.70 -74.06 -0.64 -2.73 16 39 H -0.29 0.10 7.11 99.48 0.71 0.81 16 40 H -0.29 -0.26 7.11 99.48 0.71 0.45 16 41 H 0.23 -1.98 6.89 -2.91 -0.02 -2.00 16 42 H 0.19 -2.35 6.44 -2.91 -0.02 -2.36 16 43 H 0.11 -1.78 8.10 -2.39 -0.02 -1.80 16 44 H 0.11 -1.32 7.49 -2.39 -0.02 -1.34 16 Total: 0.00 -37.69 401.55 -4.63 -42.32 By element: Atomic # 1 Polarization: -28.21 SS G_CDS: -0.12 Total: -28.33 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 6.29 Total: 22.02 kcal Atomic # 7 Polarization: 2.11 SS G_CDS: -5.75 Total: -3.65 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -6.20 Total: -21.02 kcal Atomic # 14 Polarization: -5.00 SS G_CDS: 2.14 Total: -2.86 kcal Atomic # 16 Polarization: -7.51 SS G_CDS: -0.30 Total: -7.81 kcal Atomic # 35 Polarization: 0.00 SS G_CDS: -0.69 Total: -0.68 kcal Total: -37.69 -4.63 -42.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_17836384_12335884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.410 kcal (2) G-P(sol) polarization free energy of solvation -37.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds