Wall clock time and date at job start Thu Mar 4 2021 13:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 N 1.28467 * 124.88662 * 2 1 4 4 C 1.31804 * 110.07635 * 180.20441 * 3 2 1 5 5 C 1.47704 * 126.52245 * 179.85562 * 4 3 2 6 6 O 1.21573 * 120.00502 * 179.68911 * 5 4 3 7 7 N 1.34780 * 120.00133 * 359.68664 * 5 4 3 8 8 C 1.47067 * 136.05152 * 359.62951 * 7 5 4 9 9 C 1.53497 * 87.98534 * 153.13820 * 8 7 5 10 10 O 1.42900 * 114.21107 * 139.65453 * 9 8 7 11 11 Si 1.63104 * 114.00137 * 116.39906 * 10 9 8 12 12 C 1.86304 * 109.46924 * 300.00059 * 11 10 9 13 13 C 1.86294 * 109.46807 * 60.00026 * 11 10 9 14 14 C 1.86290 * 109.46986 * 180.02562 * 11 10 9 15 15 C 1.53000 * 109.47679 * 60.00054 * 14 11 10 16 16 C 1.52998 * 109.47326 * 180.02562 * 14 11 10 17 17 C 1.53010 * 109.47199 * 299.99935 * 14 11 10 18 18 C 1.47066 * 136.06263 * 179.97438 * 7 5 4 19 19 C 1.41508 * 106.95974 * 359.59536 * 4 3 2 20 20 C 1.35031 * 124.88172 * 179.75631 * 2 1 3 21 21 C 1.50699 * 126.39097 * 359.94038 * 20 2 1 22 22 O 1.42908 * 109.46895 * 330.00127 * 21 20 2 23 23 Si 1.86295 * 109.47415 * 210.00360 * 21 20 2 24 24 H 1.48500 * 109.47227 * 59.99510 * 23 21 20 25 25 H 1.48498 * 109.47365 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46969 * 299.99567 * 23 21 20 27 27 H 1.08992 * 109.47011 * 270.24600 * 1 2 3 28 28 H 1.09004 * 109.46517 * 30.24861 * 1 2 3 29 29 H 1.08997 * 109.47144 * 150.24242 * 1 2 3 30 30 H 1.09007 * 113.46858 * 267.91303 * 8 7 5 31 31 H 1.08993 * 113.47208 * 38.35639 * 8 7 5 32 32 H 1.09006 * 114.20377 * 272.47966 * 9 8 7 33 33 H 1.09004 * 109.46879 * 60.00392 * 12 11 10 34 34 H 1.08997 * 109.46545 * 179.97438 * 12 11 10 35 35 H 1.08996 * 109.47220 * 300.00121 * 12 11 10 36 36 H 1.09001 * 109.47449 * 60.00040 * 13 11 10 37 37 H 1.09004 * 109.46720 * 179.97438 * 13 11 10 38 38 H 1.08998 * 109.47597 * 299.99664 * 13 11 10 39 39 H 1.08996 * 109.47031 * 59.99422 * 15 14 11 40 40 H 1.08998 * 109.47786 * 180.02562 * 15 14 11 41 41 H 1.09004 * 109.46780 * 300.00333 * 15 14 11 42 42 H 1.08996 * 109.47155 * 59.99810 * 16 14 11 43 43 H 1.08994 * 109.47565 * 179.97438 * 16 14 11 44 44 H 1.09004 * 109.47181 * 300.00114 * 16 14 11 45 45 H 1.08997 * 109.46720 * 60.00273 * 17 14 11 46 46 H 1.09004 * 109.46905 * 179.97438 * 17 14 11 47 47 H 1.08996 * 109.47019 * 300.00029 * 17 14 11 48 48 H 1.09005 * 113.46156 * 321.64401 * 18 7 5 49 49 H 1.08998 * 113.46839 * 92.07769 * 18 7 5 50 50 H 1.07996 * 127.24722 * 180.26147 * 19 4 3 51 51 H 1.08994 * 109.47139 * 90.00077 * 21 20 2 52 52 H 0.96697 * 113.99660 * 300.00196 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.1998 1.0538 0.0000 4 6 3.4741 0.7169 -0.0044 5 6 4.6273 1.6397 -0.0089 6 8 5.7598 1.1976 -0.0071 7 7 4.4242 2.9721 -0.0151 8 6 3.2557 3.8650 -0.0257 9 6 4.1251 4.9222 0.6690 10 8 3.9233 6.2535 0.1905 11 14 3.3286 7.2784 1.3114 12 6 1.6791 6.6537 1.9110 13 6 4.5119 7.3835 2.7465 14 6 3.1151 8.9681 0.5567 15 6 2.1431 8.8814 -0.6217 16 6 2.5579 9.9297 1.6082 17 6 4.4696 9.4814 0.0638 18 6 5.2734 4.1728 -0.0204 19 6 3.5272 -0.6972 0.0021 20 6 2.2373 -1.1077 0.0047 21 6 1.7534 -2.5349 0.0120 22 8 0.4960 -2.6081 0.6871 23 14 2.9953 -3.6071 0.8945 24 1 3.1554 -3.1315 2.2921 25 1 2.5182 -5.0134 0.9022 26 1 4.3019 -3.5312 0.1929 27 1 -0.3633 0.0044 1.0276 28 1 -0.3632 0.8878 -0.5177 29 1 -0.3633 -0.8921 -0.5100 30 1 2.9391 4.1538 -1.0280 31 1 2.4309 3.5080 0.5909 32 1 4.1336 4.8495 1.7566 33 1 1.8037 5.6649 2.3525 34 1 1.2819 7.3383 2.6604 35 1 0.9868 6.5921 1.0713 36 1 5.4770 7.7489 2.3957 37 1 4.1147 8.0687 3.4954 38 1 4.6364 6.3947 3.1880 39 1 1.1782 8.5156 -0.2706 40 1 2.0185 9.8699 -1.0636 41 1 2.5405 8.1964 -1.3708 42 1 3.2507 9.9915 2.4474 43 1 2.4334 10.9184 1.1668 44 1 1.5930 9.5642 1.9598 45 1 4.8669 8.7965 -0.6853 46 1 4.3445 10.4700 -0.3782 47 1 5.1620 9.5433 0.9032 48 1 6.1641 4.0772 0.6008 49 1 5.4948 4.5435 -1.0212 50 1 4.4108 -1.3181 0.0048 51 1 1.6359 -2.8839 -1.0138 52 1 0.5258 -2.3121 1.6072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_22_18362370_13259642.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:45:19 Heat of formation + Delta-G solvation = -36.648364 kcal Electronic energy + Delta-G solvation = -30423.044032 eV Core-core repulsion = 26356.672576 eV Total energy + Delta-G solvation = -4066.371456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.87608 -41.47117 -39.29527 -38.01593 -36.80359 -36.52446 -34.43118 -32.75002 -30.47227 -29.32962 -29.03671 -28.26372 -27.80940 -27.38367 -27.11180 -26.54480 -24.35811 -22.57009 -21.86097 -20.37183 -20.08588 -18.96891 -18.43959 -17.84918 -17.61885 -17.13413 -16.88985 -16.33360 -16.02347 -15.86184 -15.79232 -15.28242 -15.19977 -15.06522 -14.79417 -14.75105 -14.41128 -14.37458 -13.98733 -13.88061 -13.60409 -13.53352 -13.42008 -13.35539 -13.17385 -13.10427 -12.91343 -12.89223 -12.81330 -12.60296 -12.43343 -12.34919 -12.07615 -11.82551 -11.77088 -11.66324 -11.56898 -11.32565 -11.27902 -10.92036 -10.30498 -10.27145 -10.04169 -9.98938 -9.84513 0.37174 0.73830 1.11117 1.22669 1.49254 1.50628 1.63734 1.79023 1.85469 1.96603 2.11514 2.21372 2.48893 3.06027 3.22032 3.28656 3.34500 3.70414 3.83357 4.03474 4.15639 4.16206 4.31116 4.35426 4.38900 4.40240 4.49404 4.51386 4.53695 4.58009 4.62288 4.62665 4.73679 4.76209 4.76898 4.81029 4.83776 4.84724 4.86208 4.87629 5.04482 5.13296 5.13797 5.20327 5.24621 5.38139 5.45295 5.47110 5.52856 5.62714 5.67233 5.68550 6.44266 6.49297 6.67734 6.97325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.258 5.258 3 N -0.254 5.254 4 C -0.036 4.036 5 C 0.631 3.369 6 O -0.571 6.571 7 N -0.638 5.638 8 C 0.092 3.908 9 C 0.085 3.915 10 O -0.611 6.611 11 Si 1.317 2.683 12 C -0.515 4.515 13 C -0.521 4.521 14 C -0.381 4.381 15 C -0.138 4.138 16 C -0.142 4.142 17 C -0.139 4.139 18 C 0.095 3.905 19 C -0.203 4.203 20 C -0.007 4.007 21 C -0.042 4.042 22 O -0.540 6.540 23 Si 0.998 3.002 24 H -0.263 1.263 25 H -0.255 1.255 26 H -0.264 1.264 27 H 0.107 0.893 28 H 0.101 0.899 29 H 0.121 0.879 30 H 0.103 0.897 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.064 0.936 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.059 0.941 48 H 0.087 0.913 49 H 0.105 0.895 50 H 0.163 0.837 51 H 0.146 0.854 52 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.983 0.143 1.975 7.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.048 5.048 3 N -0.092 5.092 4 C -0.194 4.194 5 C 0.420 3.580 6 O -0.449 6.449 7 N -0.374 5.374 8 C -0.030 4.030 9 C 0.027 3.973 10 O -0.569 6.569 11 Si 1.447 2.553 12 C -0.617 4.617 13 C -0.623 4.623 14 C -0.424 4.424 15 C -0.195 4.195 16 C -0.199 4.199 17 C -0.196 4.196 18 C -0.027 4.027 19 C -0.231 4.231 20 C -0.133 4.133 21 C -0.153 4.153 22 O -0.346 6.346 23 Si 0.820 3.180 24 H -0.187 1.187 25 H -0.179 1.179 26 H -0.188 1.188 27 H 0.125 0.875 28 H 0.119 0.881 29 H 0.139 0.861 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.136 0.864 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.083 0.917 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.078 0.922 48 H 0.106 0.894 49 H 0.123 0.877 50 H 0.180 0.820 51 H 0.164 0.836 52 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.721 -0.122 1.557 6.900 hybrid contribution 0.552 0.311 0.443 0.773 sum -6.169 0.188 2.001 6.488 Atomic orbital electron populations 1.22705 0.70088 1.06922 1.06489 1.45803 1.09213 1.01640 1.48128 1.73519 1.02360 1.14465 1.18864 1.21545 0.90870 0.93830 1.13129 1.16478 0.86464 0.79537 0.75497 1.90793 1.24334 1.76585 1.53173 1.49003 1.13660 1.02958 1.71758 1.23704 0.90529 0.85659 1.03126 1.23255 0.95761 0.80349 0.97956 1.85410 1.85029 1.24819 1.61620 0.76250 0.62935 0.59790 0.56314 1.27088 1.20667 1.06823 1.07131 1.27159 1.12985 1.04847 1.17266 1.25917 0.98145 1.16595 1.01742 1.21552 0.98829 1.01696 0.97391 1.21609 1.01208 0.98950 0.98106 1.21563 0.95852 1.00951 1.01217 1.23488 0.95992 0.80203 1.03060 1.21678 0.97654 0.93602 1.10187 1.22222 0.90464 0.92677 1.07896 1.24693 0.94360 0.91179 1.05082 1.86496 1.28931 1.88775 1.30440 0.84990 0.76224 0.77900 0.78861 1.18738 1.17894 1.18790 0.87510 0.88082 0.86107 0.87866 0.88429 0.86366 0.91053 0.90343 0.90646 0.91053 0.90299 0.91170 0.91869 0.93497 0.92306 0.91915 0.93209 0.91655 0.92318 0.93444 0.92168 0.89442 0.87712 0.81981 0.83649 0.75830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 -0.64 10.12 127.77 1.29 0.65 16 2 N -0.26 0.02 3.70 -355.92 -1.32 -1.30 16 3 N -0.25 -1.23 10.51 -48.18 -0.51 -1.74 16 4 C -0.04 -0.33 7.10 42.46 0.30 -0.03 16 5 C 0.63 7.80 8.08 86.74 0.70 8.50 16 6 O -0.57 -11.00 17.70 -3.95 -0.07 -11.07 16 7 N -0.64 -3.95 3.69 -862.52 -3.18 -7.13 16 8 C 0.09 0.00 7.64 83.18 0.64 0.63 16 9 C 0.09 -0.16 3.91 30.92 0.12 -0.04 16 10 O -0.61 1.29 8.61 -148.98 -1.28 0.01 16 11 Si 1.32 -5.83 8.24 68.60 0.57 -5.26 16 12 C -0.51 2.31 8.65 113.37 0.98 3.29 16 13 C -0.52 1.65 8.64 113.37 0.98 2.63 16 14 C -0.38 0.83 0.53 -10.79 -0.01 0.82 16 15 C -0.14 0.20 7.85 71.98 0.56 0.76 16 16 C -0.14 0.37 7.85 71.98 0.56 0.94 16 17 C -0.14 0.10 7.85 71.99 0.56 0.67 16 18 C 0.09 0.19 8.46 83.17 0.70 0.89 16 19 C -0.20 -1.27 9.35 22.41 0.21 -1.07 16 20 C -0.01 0.00 6.18 41.40 0.26 0.25 16 21 C -0.04 0.22 2.87 71.24 0.20 0.43 16 22 O -0.54 4.16 10.40 -148.98 -1.55 2.61 16 23 Si 1.00 -2.94 26.63 68.60 1.83 -1.11 16 24 H -0.26 0.16 7.11 99.48 0.71 0.87 16 25 H -0.26 0.39 7.11 99.48 0.71 1.10 16 26 H -0.26 -0.10 6.87 99.48 0.68 0.59 16 27 H 0.11 -1.29 8.14 -2.39 -0.02 -1.31 16 28 H 0.10 -0.95 8.14 -2.38 -0.02 -0.97 16 29 H 0.12 -1.22 6.77 -2.39 -0.02 -1.24 16 30 H 0.10 -0.10 8.14 -2.38 -0.02 -0.12 16 31 H 0.10 -0.13 7.49 -2.39 -0.02 -0.15 16 32 H 0.12 -0.62 6.50 -2.38 -0.02 -0.63 16 33 H 0.07 -0.36 7.96 -2.38 -0.02 -0.37 16 34 H 0.08 -0.38 7.79 -2.39 -0.02 -0.40 16 35 H 0.07 -0.33 7.79 -2.39 -0.02 -0.35 16 36 H 0.07 -0.16 7.79 -2.39 -0.02 -0.18 16 37 H 0.08 -0.29 7.79 -2.39 -0.02 -0.31 16 38 H 0.07 -0.26 7.31 -2.39 -0.02 -0.27 16 39 H 0.06 -0.20 7.79 -2.39 -0.02 -0.22 16 40 H 0.05 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.06 -0.07 7.97 -2.39 -0.02 -0.08 16 42 H 0.06 -0.24 7.79 -2.39 -0.02 -0.26 16 43 H 0.05 -0.06 8.14 -2.39 -0.02 -0.07 16 44 H 0.06 -0.29 7.79 -2.38 -0.02 -0.30 16 45 H 0.06 -0.03 7.96 -2.39 -0.02 -0.04 16 46 H 0.05 0.02 8.14 -2.38 -0.02 0.00 16 47 H 0.06 -0.12 7.80 -2.39 -0.02 -0.14 16 48 H 0.09 0.16 8.14 -2.38 -0.02 0.14 16 49 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 50 H 0.16 0.98 6.86 -2.91 -0.02 0.96 16 51 H 0.15 -1.18 7.96 -2.39 -0.02 -1.20 16 52 H 0.39 -5.12 8.70 -74.06 -0.64 -5.76 16 Total: 0.00 -19.89 418.58 3.54 -16.34 By element: Atomic # 1 Polarization: -11.67 SS G_CDS: 0.99 Total: -10.68 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: 8.07 Total: 19.33 kcal Atomic # 7 Polarization: -5.16 SS G_CDS: -5.00 Total: -10.17 kcal Atomic # 8 Polarization: -5.55 SS G_CDS: -2.90 Total: -8.46 kcal Atomic # 14 Polarization: -8.76 SS G_CDS: 2.39 Total: -6.37 kcal Total: -19.89 3.54 -16.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_22_18362370_13259642.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.304 kcal (2) G-P(sol) polarization free energy of solvation -19.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds