Wall clock time and date at job start Thu Mar 4 2021 13:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33330 * 125.94995 * 2 1 4 4 C 1.50698 * 122.70970 * 359.96842 * 3 2 1 5 5 O 1.42898 * 109.47491 * 29.99494 * 4 3 2 6 6 Si 1.86302 * 109.47113 * 149.99678 * 4 3 2 7 7 N 1.32119 * 114.57801 * 179.78988 * 3 2 1 8 8 C 1.29689 * 116.86437 * 0.51639 * 7 3 2 9 9 N 1.38618 * 124.94915 * 179.71194 * 8 7 3 10 10 C 1.46502 * 119.99978 * 180.02562 * 9 8 7 11 11 H 1.08995 * 112.84681 * 336.20026 * 10 9 8 12 12 C 1.53777 * 113.61377 * 107.50927 * 10 9 8 13 13 C 1.53773 * 87.08218 * 89.11339 * 12 10 9 14 14 C 1.53002 * 113.61425 * 139.98124 * 13 12 10 15 15 O 1.42899 * 113.61520 * 270.88363 * 13 12 10 16 16 C 1.53776 * 113.61305 * 205.00560 * 10 9 8 17 17 S 1.70968 * 110.10458 * 359.72434 * 8 7 3 18 18 H 1.09002 * 109.47152 * 179.71292 * 1 2 3 19 19 H 1.09001 * 109.46980 * 59.71392 * 1 2 3 20 20 H 1.09004 * 109.47113 * 299.71373 * 1 2 3 21 21 H 1.09001 * 109.46939 * 269.99162 * 4 3 2 22 22 H 0.96700 * 114.00104 * 180.02562 * 5 4 3 23 23 H 1.48500 * 110.00107 * 178.67681 * 6 4 3 24 24 H 1.48498 * 109.99895 * 299.99959 * 6 4 3 25 25 H 0.96993 * 119.99650 * 0.03733 * 9 8 7 26 26 H 1.08996 * 113.61622 * 203.66688 * 12 10 9 27 27 H 1.09004 * 113.61216 * 334.56073 * 12 10 9 28 28 H 1.08997 * 109.47170 * 322.50552 * 14 13 12 29 29 H 1.09004 * 109.46983 * 82.50232 * 14 13 12 30 30 H 1.08995 * 109.47084 * 202.50432 * 14 13 12 31 31 H 0.96707 * 114.00170 * 277.49514 * 15 13 12 32 32 H 1.09002 * 113.61701 * 25.42987 * 16 10 9 33 33 H 1.08997 * 113.61638 * 156.33377 * 16 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2898 1.0793 0.0000 4 6 1.7414 2.4830 -0.0007 5 8 0.4809 2.5024 0.6722 6 14 2.9318 3.6153 0.8778 7 7 3.5850 0.8188 0.0044 8 6 3.9315 -0.4309 -0.0023 9 7 5.2385 -0.8926 -0.0049 10 6 5.5066 -2.3328 -0.0132 11 1 4.6805 -2.9194 0.3887 12 6 6.0362 -2.8531 -1.3599 13 6 7.4477 -2.5393 -0.8367 14 6 8.4881 -3.5982 -1.2073 15 8 7.8819 -1.2085 -1.1238 16 6 6.8747 -2.7081 0.5803 17 16 2.5413 -1.4261 -0.0078 18 1 -0.3633 -1.0277 -0.0051 19 1 -0.3633 0.5183 -0.8874 20 1 -0.3633 0.5094 0.8926 21 1 1.6098 2.8211 -1.0285 22 1 0.0684 3.3762 0.7096 23 1 2.4177 5.0083 0.8561 24 1 3.1199 3.1650 2.2803 25 1 5.9755 -0.2620 -0.0011 26 1 5.8557 -3.9162 -1.5188 27 1 5.7399 -2.2406 -2.2115 28 1 8.0338 -4.5876 -1.1560 29 1 8.8476 -3.4155 -2.2200 30 1 9.3242 -3.5457 -0.5099 31 1 8.2434 -1.0960 -2.0137 32 1 7.2556 -1.9786 1.2951 33 1 6.9235 -3.7316 0.9520 There are 44 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 44 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_11245584_15704122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:28:33 Heat of formation + Delta-G solvation = 0.035341 kcal Electronic energy + Delta-G solvation = -17318.822799 eV Core-core repulsion = 14474.121995 eV Total energy + Delta-G solvation = -2844.700803 eV No. of doubly occupied orbitals = 44 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 257.087 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.29465 -40.72805 -37.89252 -36.56621 -34.70308 -32.57261 -30.15243 -29.01240 -26.86571 -25.66081 -24.40880 -23.60217 -20.92824 -20.28283 -19.20349 -18.20276 -17.50225 -17.28664 -16.59914 -16.39421 -15.95578 -15.85366 -15.41138 -15.22153 -14.55074 -14.17764 -13.99365 -13.89171 -13.62773 -13.39880 -13.15059 -13.13105 -12.71788 -12.62169 -12.39897 -12.31832 -11.76014 -11.34380 -11.01211 -10.71918 -10.63446 -10.47521 -10.02057 -8.59522 -4.80135 -0.03023 0.13433 0.71932 1.25739 1.57829 1.82852 1.84296 2.01806 3.02427 3.14493 3.38158 3.62494 3.72915 3.87446 3.94134 4.13638 4.32697 4.37144 4.41789 4.57023 4.71406 4.73620 4.79858 4.83248 4.87740 4.91965 5.05397 5.11162 5.15015 5.29951 5.32216 5.74366 6.36357 6.62282 6.83712 6.90347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 C -0.255 4.255 3 C 0.086 3.914 4 C -0.040 4.040 5 O -0.545 6.545 6 Si 0.770 3.230 7 N -0.563 5.563 8 C 0.313 3.687 9 N -0.665 5.665 10 C 0.120 3.880 11 H 0.100 0.900 12 C -0.174 4.174 13 C 0.104 3.896 14 C -0.167 4.167 15 O -0.562 6.562 16 C -0.131 4.131 17 S 0.117 5.883 18 H 0.064 0.936 19 H 0.076 0.924 20 H 0.079 0.921 21 H 0.102 0.898 22 H 0.398 0.602 23 H -0.270 1.270 24 H -0.323 1.323 25 H 0.417 0.583 26 H 0.120 0.880 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.395 0.605 32 H 0.073 0.927 33 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.067 -3.900 -3.428 5.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.378 4.378 3 C -0.043 4.043 4 C -0.152 4.152 5 O -0.355 6.355 6 Si 0.676 3.324 7 N -0.291 5.291 8 C -0.059 4.059 9 N -0.305 5.305 10 C 0.014 3.986 11 H 0.117 0.883 12 C -0.213 4.213 13 C 0.063 3.937 14 C -0.225 4.225 15 O -0.370 6.370 16 C -0.169 4.169 17 S 0.366 5.634 18 H 0.083 0.917 19 H 0.095 0.905 20 H 0.098 0.902 21 H 0.119 0.881 22 H 0.250 0.750 23 H -0.196 1.196 24 H -0.251 1.251 25 H 0.257 0.743 26 H 0.139 0.861 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.245 0.755 32 H 0.092 0.908 33 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.406 -4.745 -2.115 5.725 hybrid contribution -0.780 1.345 -0.285 1.581 sum 1.626 -3.400 -2.400 4.468 Atomic orbital electron populations 1.20048 0.85643 1.01804 1.03518 1.25416 1.02260 0.93210 1.16923 1.19103 0.86724 0.96063 1.02443 1.23991 0.92057 0.96680 1.02499 1.86509 1.32865 1.36674 1.79442 0.93010 0.86785 0.73970 0.78638 1.65632 1.17127 1.17411 1.28946 1.23492 0.92695 0.91366 0.98313 1.43797 1.01001 1.07133 1.78571 1.22039 0.98810 0.79190 0.98543 0.88263 1.24284 0.96636 1.03302 0.97107 1.22219 0.92467 0.83037 0.95947 1.22269 0.98956 0.98969 1.02261 1.86402 1.83600 1.28049 1.38970 1.23562 0.92914 1.04332 0.96083 1.83675 0.95715 1.09836 1.74204 0.91684 0.90533 0.90246 0.88069 0.75049 1.19622 1.25129 0.74268 0.86149 0.91180 0.89957 0.91541 0.92039 0.75488 0.90788 0.84855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.21 8.90 71.24 0.63 0.42 16 2 C -0.26 -2.04 6.50 24.58 0.16 -1.88 16 3 C 0.09 0.80 5.95 41.40 0.25 1.05 16 4 C -0.04 -0.18 2.93 71.24 0.21 0.03 16 5 O -0.55 -1.68 9.81 -148.98 -1.46 -3.14 16 6 Si 0.77 4.17 32.08 68.60 2.20 6.37 16 7 N -0.56 -5.71 8.94 -189.85 -1.70 -7.41 16 8 C 0.31 2.27 8.24 179.32 1.48 3.74 16 9 N -0.66 -2.03 5.31 -327.90 -1.74 -3.77 16 10 C 0.12 -0.25 4.31 45.51 0.20 -0.05 16 11 H 0.10 -0.29 7.06 -2.39 -0.02 -0.31 16 12 C -0.17 0.82 7.26 31.12 0.23 1.05 16 13 C 0.10 -0.48 1.82 -10.27 -0.02 -0.50 16 14 C -0.17 1.16 9.44 71.98 0.68 1.84 16 15 O -0.56 1.12 12.14 -148.98 -1.81 -0.68 16 16 C -0.13 0.56 7.22 31.12 0.22 0.78 16 17 S 0.12 0.58 21.69 -56.49 -1.23 -0.65 16 18 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 19 H 0.08 0.21 8.14 -2.39 -0.02 0.19 16 20 H 0.08 0.43 6.76 -2.38 -0.02 0.41 16 21 H 0.10 0.03 7.96 -2.39 -0.02 0.01 16 22 H 0.40 -2.20 8.74 -74.06 -0.65 -2.84 16 23 H -0.27 -1.61 7.11 99.48 0.71 -0.90 16 24 H -0.32 -5.00 7.11 99.48 0.71 -4.29 16 25 H 0.42 1.69 7.71 -92.71 -0.72 0.98 16 26 H 0.12 -1.01 7.96 -2.39 -0.02 -1.03 16 27 H 0.07 -0.13 8.14 -2.38 -0.02 -0.15 16 28 H 0.08 -0.74 7.94 -2.39 -0.02 -0.76 16 29 H 0.07 -0.50 8.14 -2.38 -0.02 -0.52 16 30 H 0.06 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.39 -3.17 9.04 -74.05 -0.67 -3.84 16 32 H 0.07 -0.09 8.14 -2.39 -0.02 -0.11 16 33 H 0.13 -1.15 8.10 -2.39 -0.02 -1.17 16 Total: 0.00 -14.83 286.88 -2.54 -17.37 By element: Atomic # 1 Polarization: -13.74 SS G_CDS: -0.84 Total: -14.58 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 4.03 Total: 6.50 kcal Atomic # 7 Polarization: -7.74 SS G_CDS: -3.44 Total: -11.18 kcal Atomic # 8 Polarization: -0.56 SS G_CDS: -3.27 Total: -3.83 kcal Atomic # 14 Polarization: 4.17 SS G_CDS: 2.20 Total: 6.37 kcal Atomic # 16 Polarization: 0.58 SS G_CDS: -1.23 Total: -0.65 kcal Total: -14.83 -2.54 -17.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_11245584_15704122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.405 kcal (2) G-P(sol) polarization free energy of solvation -14.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.370 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds