Wall clock time and date at job start Thu Mar 4 2021 13:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86295 * 1 3 3 C 1.86297 * 109.47079 * 2 1 4 4 C 1.86302 * 109.47089 * 240.00368 * 2 1 3 5 5 C 1.89996 * 109.47264 * 120.00382 * 2 1 3 6 6 C 3.07402 * 109.47231 * 120.00381 * 2 1 3 7 7 C 4.50596 * 109.47238 * 120.00396 * 2 1 3 8 8 C 1.33581 * 124.38708 * 30.10632 * 7 6 5 9 9 C 1.44692 * 114.56430 * 180.02562 * 8 7 6 10 10 C 1.41826 * 130.33322 * 180.02562 * 9 8 7 11 11 O 1.35428 * 120.51967 * 0.02562 * 10 9 8 12 12 C 1.35899 * 117.99850 * 185.90459 * 11 10 9 13 13 C 1.38751 * 120.03784 * 250.84910 * 12 11 10 14 14 C 1.38175 * 119.98767 * 179.69797 * 13 12 11 15 15 C 1.38213 * 120.08244 * 0.53830 * 14 13 12 16 16 C 1.50700 * 119.95727 * 179.76410 * 15 14 13 17 17 O 1.42897 * 109.46915 * 254.72432 * 16 15 14 18 18 Si 1.86296 * 109.46927 * 14.71890 * 16 15 14 19 19 H 1.48508 * 109.47151 * 60.00462 * 18 16 15 20 20 H 1.48497 * 109.47070 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47620 * 300.00270 * 18 16 15 22 22 C 1.38526 * 120.08846 * 359.48381 * 15 14 13 23 23 F 1.35105 * 119.99822 * 180.25596 * 22 15 14 24 24 C 1.38345 * 120.00637 * 0.23742 * 22 15 14 25 25 N 1.32296 * 118.95692 * 180.27897 * 10 9 8 26 26 C 1.32092 * 121.22362 * 359.39454 * 25 10 9 27 27 N 1.31324 * 122.20746 * 0.64835 * 26 25 10 28 28 C 1.33807 * 121.04056 * 359.66537 * 27 26 25 29 29 S 1.75347 * 124.38915 * 210.12717 * 7 6 5 30 30 H 1.08999 * 109.46986 * 299.99789 * 1 2 3 31 31 H 1.08997 * 109.47309 * 59.99625 * 1 2 3 32 32 H 1.09007 * 109.47456 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46938 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47356 * 300.00346 * 3 2 1 35 35 H 1.08999 * 109.47039 * 60.00244 * 3 2 1 36 36 H 1.09007 * 109.46876 * 300.00238 * 4 2 1 37 37 H 1.09002 * 109.47338 * 59.99461 * 4 2 1 38 38 H 1.08993 * 109.47306 * 180.02562 * 4 2 1 39 39 H 1.07994 * 122.71931 * 0.02562 * 8 7 6 40 40 H 1.07994 * 120.00852 * 359.97438 * 13 12 11 41 41 H 1.08001 * 119.95588 * 180.27422 * 14 13 12 42 42 H 1.09002 * 109.47237 * 134.72126 * 16 15 14 43 43 H 0.96694 * 114.00404 * 59.99963 * 17 16 15 44 44 H 1.07994 * 120.04088 * 180.02562 * 24 22 15 45 45 H 1.07994 * 118.89583 * 180.31454 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8629 0.0000 0.0000 3 6 2.4839 1.7564 0.0000 4 6 2.4839 -0.8781 -1.5212 5 6 2.4963 -0.8957 1.5512 6 6 2.8877 -1.4493 2.5098 7 6 3.3650 -2.1244 3.6789 8 6 3.0985 -3.3993 3.9756 9 6 3.6893 -3.8654 5.2114 10 6 3.6255 -5.1366 5.8372 11 8 2.9256 -6.1479 5.2702 12 6 2.7963 -7.3053 5.9705 13 6 3.4722 -8.4452 5.5593 14 6 3.3449 -9.6198 6.2757 15 6 2.5360 -9.6641 7.3956 16 6 2.3950 -10.9481 8.1718 17 8 1.1190 -11.5312 7.9001 18 14 3.7399 -12.1324 7.6625 19 1 5.0661 -11.5265 7.9447 20 1 3.6014 -13.3974 8.4277 21 1 3.6249 -12.4171 6.2096 22 6 1.8593 -8.5282 7.8088 23 9 1.0732 -8.5722 8.9067 24 6 1.9886 -7.3486 7.0976 25 7 4.2563 -5.3174 6.9859 26 6 4.9486 -4.3428 7.5477 27 7 5.0387 -3.1481 7.0099 28 6 4.4309 -2.8651 5.8519 29 16 4.3747 -1.3846 4.9069 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 3.5740 1.7564 0.0005 34 1 2.1206 2.2703 -0.8899 35 1 2.1206 2.2702 0.8900 36 1 2.1205 -1.9058 -1.5213 37 1 2.1205 -0.3643 -2.4112 38 1 3.5739 -0.8786 -1.5210 39 1 2.4913 -4.0309 3.3443 40 1 4.1012 -8.4132 4.6821 41 1 3.8748 -10.5056 5.9577 42 1 2.4795 -10.7392 9.2382 43 1 0.9741 -11.7438 6.9681 44 1 1.4616 -6.4627 7.4195 45 1 5.4532 -4.5332 8.4834 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_11680694_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 13:55:46 Heat of formation + Delta-G solvation = 4.667821 kcal Electronic energy + Delta-G solvation = -30478.890863 eV Core-core repulsion = 26014.458737 eV Total energy + Delta-G solvation = -4464.432126 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 402.078 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -50.11579 -42.87302 -41.29798 -39.58096 -37.93531 -37.48380 -34.64944 -34.04908 -32.50988 -31.83888 -30.63245 -29.43190 -28.26716 -28.26386 -27.46003 -26.31195 -25.64690 -24.41317 -23.27822 -22.92543 -21.23022 -20.60797 -18.84345 -18.65510 -18.24489 -17.75305 -17.44458 -17.14689 -17.05209 -16.94369 -16.70484 -16.32781 -15.86730 -15.74273 -15.53837 -15.38689 -15.25675 -15.02160 -14.44288 -14.33156 -14.18038 -14.10634 -13.85892 -13.81593 -13.58850 -13.34765 -13.15181 -13.13818 -12.96036 -12.92385 -12.78752 -12.47179 -12.36501 -12.22639 -12.14406 -12.10832 -11.75633 -11.70734 -11.51572 -10.80798 -10.78867 -10.66160 -10.52064 -10.27094 -10.06439 -9.91728 -9.37249 -1.13598 -0.60790 -0.43337 -0.38187 -0.12516 0.30191 0.41842 1.09155 1.26991 1.43708 1.46522 1.54855 1.61583 1.72025 1.92331 2.24164 2.28433 2.38014 2.45792 2.55174 2.60421 2.92594 3.04187 3.08165 3.25674 3.33943 3.43501 3.60436 3.65264 3.76024 3.92776 4.06064 4.23737 4.43880 4.49303 4.64611 4.66593 4.71783 4.76858 4.86175 4.86307 4.88748 4.89273 4.91930 4.92060 4.92555 4.94416 5.27844 5.38216 5.61714 5.71127 5.71481 5.88397 6.34430 6.62216 6.65359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.208 2.792 3 C -0.464 4.464 4 C -0.463 4.463 5 C -0.341 4.341 6 C -0.178 4.178 7 C -0.090 4.090 8 C -0.065 4.065 9 C -0.196 4.196 10 C 0.413 3.587 11 O -0.232 6.232 12 C 0.106 3.894 13 C -0.107 4.107 14 C -0.078 4.078 15 C -0.145 4.145 16 C -0.092 4.092 17 O -0.551 6.551 18 Si 0.992 3.008 19 H -0.250 1.250 20 H -0.273 1.273 21 H -0.228 1.228 22 C 0.126 3.874 23 F -0.137 7.137 24 C -0.155 4.155 25 N -0.572 5.572 26 C 0.357 3.643 27 N -0.520 5.520 28 C 0.093 3.907 29 S 0.229 5.771 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.172 0.828 40 H 0.164 0.836 41 H 0.169 0.831 42 H 0.114 0.886 43 H 0.392 0.608 44 H 0.135 0.865 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.050 0.016 -6.226 6.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.571 4.571 2 Si 1.389 2.611 3 C -0.572 4.572 4 C -0.570 4.570 5 C -0.375 4.375 6 C -0.180 4.180 7 C -0.205 4.205 8 C -0.095 4.095 9 C -0.210 4.210 10 C 0.219 3.781 11 O -0.133 6.133 12 C 0.064 3.936 13 C -0.126 4.126 14 C -0.095 4.095 15 C -0.146 4.146 16 C -0.201 4.201 17 O -0.359 6.359 18 Si 0.813 3.187 19 H -0.174 1.174 20 H -0.198 1.198 21 H -0.151 1.151 22 C 0.106 3.894 23 F -0.116 7.116 24 C -0.175 4.175 25 N -0.303 5.303 26 C 0.066 3.934 27 N -0.240 5.240 28 C -0.157 4.157 29 S 0.493 5.507 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.189 0.811 40 H 0.182 0.818 41 H 0.187 0.813 42 H 0.132 0.868 43 H 0.241 0.759 44 H 0.153 0.847 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges 2.590 0.759 -4.876 5.573 hybrid contribution -1.449 -0.991 -0.135 1.761 sum 1.140 -0.232 -5.010 5.144 Atomic orbital electron populations 1.26244 1.20408 1.05049 1.05448 0.76307 0.64872 0.63267 0.56670 1.26242 1.06740 1.18680 1.05511 1.26228 1.06699 1.08608 1.15505 1.37726 0.97618 0.98113 1.04064 1.19954 1.01995 1.01115 0.94951 1.19693 1.06040 0.96630 0.98178 1.20990 0.99822 0.94248 0.94486 1.19616 1.08053 0.93233 1.00116 1.20128 0.85506 0.84921 0.87534 1.84631 1.65762 1.20511 1.42439 1.18374 0.97674 0.84599 0.92979 1.21378 0.98264 0.91144 1.01789 1.21134 0.96775 0.98931 0.92663 1.20698 0.99457 0.95848 0.98619 1.25246 0.96019 0.95264 1.03542 1.86549 1.34131 1.82138 1.33041 0.85101 0.75561 0.76890 0.81172 1.17357 1.19824 1.15112 1.17283 0.93003 0.93927 0.85158 1.91525 1.72027 1.97016 1.50997 1.21225 1.01693 0.98461 0.96092 1.68146 1.14706 1.36785 1.10673 1.25517 0.88780 0.80892 0.98162 1.68154 1.22997 1.23449 1.09448 1.24173 0.96447 0.99066 0.96058 1.84445 1.49297 1.05789 1.11147 0.91194 0.89182 0.91081 0.91061 0.89141 0.91126 0.91045 0.89181 0.91100 0.81101 0.81823 0.81346 0.86776 0.75885 0.84709 0.73886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.94 8.65 113.37 0.98 3.92 16 2 Si 1.21 -9.19 14.26 68.60 0.98 -8.21 16 3 C -0.46 2.98 8.65 113.37 0.98 3.96 16 4 C -0.46 3.07 8.65 113.37 0.98 4.05 16 5 C -0.34 -0.60 12.14 74.32 0.90 0.30 16 6 C -0.18 -1.15 13.64 30.01 0.41 -0.74 16 7 C -0.09 -0.60 6.15 22.46 0.14 -0.46 16 8 C -0.07 -0.37 10.19 22.86 0.23 -0.13 16 9 C -0.20 -1.39 6.08 -20.31 -0.12 -1.52 16 10 C 0.41 2.69 7.44 85.51 0.64 3.32 16 11 O -0.23 -1.16 9.95 -30.67 -0.31 -1.47 16 12 C 0.11 0.34 5.26 22.51 0.12 0.46 16 13 C -0.11 0.15 9.99 22.38 0.22 0.38 16 14 C -0.08 0.24 8.65 22.25 0.19 0.44 16 15 C -0.14 -0.07 5.27 -19.80 -0.10 -0.17 16 16 C -0.09 0.08 2.45 71.24 0.17 0.25 16 17 O -0.55 -0.54 12.88 -148.98 -1.92 -2.45 16 18 Si 0.99 -4.12 25.48 68.60 1.75 -2.37 16 19 H -0.25 0.82 7.11 99.48 0.71 1.52 16 20 H -0.27 -0.03 7.11 99.48 0.71 0.68 16 21 H -0.23 1.67 6.74 99.48 0.67 2.34 16 22 C 0.13 0.60 7.24 22.36 0.16 0.76 16 23 F -0.14 -1.17 16.75 44.97 0.75 -0.42 16 24 C -0.16 -0.71 9.45 22.41 0.21 -0.50 16 25 N -0.57 -3.14 9.16 -311.71 -2.86 -6.00 16 26 C 0.36 1.15 12.26 180.93 2.22 3.37 16 27 N -0.52 -3.72 10.47 -195.88 -2.05 -5.77 16 28 C 0.09 0.73 7.69 84.83 0.65 1.38 16 29 S 0.23 1.30 23.16 -56.49 -1.31 -0.01 16 30 H 0.07 -0.36 7.96 -2.39 -0.02 -0.38 16 31 H 0.09 -0.74 7.96 -2.39 -0.02 -0.76 16 32 H 0.07 -0.39 7.96 -2.38 -0.02 -0.41 16 33 H 0.07 -0.39 7.96 -2.38 -0.02 -0.41 16 34 H 0.09 -0.75 7.96 -2.39 -0.02 -0.77 16 35 H 0.07 -0.38 7.96 -2.39 -0.02 -0.40 16 36 H 0.07 -0.41 7.96 -2.38 -0.02 -0.43 16 37 H 0.09 -0.76 7.96 -2.39 -0.02 -0.78 16 38 H 0.07 -0.40 7.96 -2.39 -0.02 -0.42 16 39 H 0.17 0.39 8.06 -2.91 -0.02 0.36 16 40 H 0.16 -0.93 8.06 -2.91 -0.02 -0.96 16 41 H 0.17 -1.43 4.88 -2.91 -0.01 -1.44 16 42 H 0.11 0.00 7.90 -2.39 -0.02 -0.02 16 43 H 0.39 -2.75 8.70 -74.06 -0.64 -3.40 16 44 H 0.13 0.67 8.06 -2.91 -0.02 0.65 16 45 H 0.25 -1.22 8.06 -2.91 -0.02 -1.24 16 Total: 0.00 -19.07 418.30 5.17 -13.90 By element: Atomic # 1 Polarization: -7.40 SS G_CDS: 1.14 Total: -6.26 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: 8.99 Total: 19.06 kcal Atomic # 7 Polarization: -6.86 SS G_CDS: -4.91 Total: -11.77 kcal Atomic # 8 Polarization: -1.70 SS G_CDS: -2.22 Total: -3.92 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.75 Total: -0.42 kcal Atomic # 14 Polarization: -13.31 SS G_CDS: 2.73 Total: -10.58 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.31 Total: -0.01 kcal Total: -19.07 5.17 -13.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_11680694_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.570 kcal (2) G-P(sol) polarization free energy of solvation -19.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -13.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds