Wall clock time and date at job start Thu Mar 4 2021 14:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86298 * 1 3 3 C 1.86302 * 109.47204 * 2 1 4 4 C 1.86308 * 109.47057 * 240.00048 * 2 1 3 5 5 C 1.89997 * 109.47369 * 120.00108 * 2 1 3 6 6 C 3.07402 * 109.47267 * 120.00249 * 2 1 3 7 7 C 4.50601 * 109.47165 * 120.00182 * 2 1 3 8 8 C 1.33577 * 124.39078 * 69.44848 * 7 6 5 9 9 C 1.44686 * 114.56571 * 180.02562 * 8 7 6 10 10 C 1.41839 * 130.32904 * 180.02562 * 9 8 7 11 11 O 1.35414 * 120.52518 * 359.97309 * 10 9 8 12 12 C 1.35936 * 118.00255 * 185.48889 * 11 10 9 13 13 C 1.38647 * 120.06364 * 261.57531 * 12 11 10 14 14 C 1.38220 * 119.96487 * 180.02562 * 13 12 11 15 15 C 1.38218 * 120.10162 * 0.02562 * 14 13 12 16 16 C 1.38308 * 120.12913 * 359.97438 * 15 14 13 17 17 C 1.50704 * 119.98101 * 180.02562 * 16 15 14 18 18 O 1.42900 * 109.46817 * 254.97557 * 17 16 15 19 19 Si 1.86302 * 109.47081 * 14.97764 * 17 16 15 20 20 H 1.48498 * 109.47183 * 60.00237 * 19 17 16 21 21 H 1.48502 * 109.46647 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47147 * 299.99536 * 19 17 16 23 23 C 1.38291 * 120.03104 * 0.02562 * 16 15 14 24 24 F 1.35095 * 120.04478 * 180.02562 * 23 16 15 25 25 N 1.32305 * 118.95243 * 180.24897 * 10 9 8 26 26 C 1.32091 * 121.22029 * 359.44193 * 25 10 9 27 27 N 1.31322 * 122.21443 * 0.59835 * 26 25 10 28 28 C 1.33809 * 121.03883 * 359.69150 * 27 26 25 29 29 S 1.75340 * 124.38646 * 249.44998 * 7 6 5 30 30 H 1.08999 * 109.47331 * 299.99852 * 1 2 3 31 31 H 1.08998 * 109.47131 * 60.00132 * 1 2 3 32 32 H 1.09003 * 109.46983 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47241 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.46968 * 299.99967 * 3 2 1 35 35 H 1.08999 * 109.46855 * 59.99857 * 3 2 1 36 36 H 1.08994 * 109.47117 * 299.99931 * 4 2 1 37 37 H 1.08998 * 109.46866 * 60.00241 * 4 2 1 38 38 H 1.09001 * 109.46613 * 179.97438 * 4 2 1 39 39 H 1.07994 * 122.71467 * 0.02562 * 8 7 6 40 40 H 1.07995 * 120.01573 * 0.02562 * 13 12 11 41 41 H 1.08000 * 119.94303 * 179.72286 * 14 13 12 42 42 H 1.07999 * 119.93944 * 179.97438 * 15 14 13 43 43 H 1.09000 * 109.46530 * 134.97858 * 17 16 15 44 44 H 0.96699 * 113.99798 * 60.00723 * 18 17 16 45 45 H 1.07998 * 118.89045 * 180.28787 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4840 1.7565 0.0000 4 6 2.4840 -0.8783 -1.5212 5 6 2.4964 -0.8957 1.5513 6 6 2.8877 -1.4492 2.5098 7 6 3.3650 -2.1243 3.6791 8 6 3.7870 -3.3914 3.6992 9 6 4.2235 -3.8595 4.9968 10 6 4.7273 -5.1243 5.3946 11 8 4.8614 -6.1258 4.4931 12 6 5.2408 -7.3488 4.9494 13 6 6.5673 -7.7423 4.8609 14 6 6.9507 -8.9865 5.3250 15 6 6.0136 -9.8395 5.8770 16 6 4.6892 -9.4511 5.9673 17 6 3.6703 -10.3835 6.5702 18 8 2.8690 -10.9495 5.5311 19 14 4.5444 -11.7460 7.4923 20 1 5.3772 -11.1579 8.5721 21 1 3.5403 -12.6645 8.0869 22 1 5.4123 -12.5015 6.5536 23 6 4.2997 -8.2075 5.5046 24 9 3.0063 -7.8275 5.5931 25 7 5.0591 -5.3119 6.6616 26 6 4.9392 -4.3431 7.5514 27 7 4.4778 -3.1550 7.2349 28 6 4.1105 -2.8693 5.9804 29 16 3.4711 -1.3945 5.2699 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 3.5740 1.7565 -0.0005 34 1 2.1207 2.2703 -0.8900 35 1 2.1206 2.2703 0.8900 36 1 2.1207 -1.9059 -1.5212 37 1 2.1207 -0.3644 -2.4111 38 1 3.5740 -0.8778 -1.5214 39 1 3.8013 -4.0159 2.8183 40 1 7.3005 -7.0771 4.4295 41 1 7.9833 -9.2945 5.2518 42 1 6.3160 -10.8113 6.2384 43 1 3.0333 -9.8290 7.2592 44 1 3.3713 -11.4582 4.8800 45 1 5.2255 -4.5361 8.5747 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_11948470_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:27:28 Heat of formation + Delta-G solvation = 3.806568 kcal Electronic energy + Delta-G solvation = -31039.447063 eV Core-core repulsion = 26574.977590 eV Total energy + Delta-G solvation = -4464.469473 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 402.078 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -50.23696 -42.81772 -41.20247 -39.68434 -37.96595 -37.57631 -34.67468 -34.07885 -32.68301 -31.53975 -30.50902 -29.44282 -28.27915 -28.27397 -27.12357 -26.80913 -26.05518 -24.03459 -23.22437 -23.00686 -21.18995 -20.46171 -19.16603 -18.64491 -18.42320 -17.71347 -17.64124 -17.20165 -17.07761 -16.82223 -16.71481 -16.05840 -16.01139 -15.86329 -15.61709 -15.40056 -15.30398 -14.72937 -14.47420 -14.36026 -14.15957 -14.11850 -13.87488 -13.82306 -13.49146 -13.38908 -13.15924 -13.14893 -13.02993 -12.97274 -12.82229 -12.47402 -12.41497 -12.18164 -12.13595 -12.10825 -11.74530 -11.73456 -11.50858 -10.84128 -10.80729 -10.67380 -10.55252 -10.21848 -10.07296 -9.93983 -9.40382 -1.16112 -0.57123 -0.46273 -0.38816 -0.14942 0.26974 0.38513 1.05313 1.33399 1.42226 1.45473 1.53781 1.59878 1.69972 1.90855 2.25011 2.30456 2.36673 2.44448 2.53033 2.60091 2.86594 2.96008 3.05216 3.21478 3.26447 3.50652 3.64707 3.75810 3.82222 4.03190 4.05367 4.23876 4.40882 4.45472 4.60144 4.69459 4.76382 4.78124 4.84990 4.85405 4.88308 4.90886 4.91175 4.93395 4.93494 5.08247 5.26989 5.41768 5.60589 5.69932 5.70545 5.88352 6.31819 6.59353 6.62295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.464 4.464 2 Si 1.207 2.793 3 C -0.462 4.462 4 C -0.462 4.462 5 C -0.339 4.339 6 C -0.180 4.180 7 C -0.089 4.089 8 C -0.069 4.069 9 C -0.199 4.199 10 C 0.409 3.591 11 O -0.235 6.235 12 C 0.028 3.972 13 C -0.078 4.078 14 C -0.094 4.094 15 C -0.085 4.085 16 C -0.148 4.148 17 C -0.097 4.097 18 O -0.554 6.554 19 Si 1.001 2.999 20 H -0.247 1.247 21 H -0.275 1.275 22 H -0.222 1.222 23 C 0.103 3.897 24 F -0.144 7.144 25 N -0.573 5.573 26 C 0.356 3.644 27 N -0.519 5.519 28 C 0.093 3.907 29 S 0.235 5.765 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.167 0.833 40 H 0.158 0.842 41 H 0.182 0.818 42 H 0.167 0.833 43 H 0.104 0.896 44 H 0.392 0.608 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.369 -1.450 -3.238 5.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.572 4.572 2 Si 1.388 2.612 3 C -0.570 4.570 4 C -0.570 4.570 5 C -0.373 4.373 6 C -0.182 4.182 7 C -0.204 4.204 8 C -0.099 4.099 9 C -0.214 4.214 10 C 0.215 3.785 11 O -0.136 6.136 12 C -0.015 4.015 13 C -0.096 4.096 14 C -0.112 4.112 15 C -0.102 4.102 16 C -0.149 4.149 17 C -0.205 4.205 18 O -0.361 6.361 19 Si 0.820 3.180 20 H -0.171 1.171 21 H -0.201 1.201 22 H -0.145 1.145 23 C 0.083 3.917 24 F -0.123 7.123 25 N -0.304 5.304 26 C 0.066 3.934 27 N -0.240 5.240 28 C -0.157 4.157 29 S 0.499 5.501 30 H 0.089 0.911 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.184 0.816 40 H 0.175 0.825 41 H 0.199 0.801 42 H 0.184 0.816 43 H 0.122 0.878 44 H 0.241 0.759 45 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 4.162 -0.567 -1.115 4.346 hybrid contribution -0.191 -1.064 -1.228 1.636 sum 3.971 -1.631 -2.343 4.890 Atomic orbital electron populations 1.26250 1.20445 1.04978 1.05515 0.76341 0.64855 0.63383 0.56592 1.26218 1.06736 1.18475 1.05566 1.26222 1.06731 1.08544 1.15525 1.37801 0.97617 0.98100 1.03811 1.19955 1.01973 1.01146 0.95132 1.19693 1.08117 0.96665 0.95954 1.20958 0.98151 0.94334 0.96437 1.19643 1.11343 0.94046 0.96354 1.20311 0.85819 0.85296 0.87073 1.84677 1.80680 1.16397 1.31856 1.18905 0.94077 0.83277 1.05247 1.21495 0.92130 0.98704 0.97292 1.21506 1.02083 0.91603 0.96019 1.21528 0.90438 1.01392 0.96885 1.20544 0.97380 0.93955 1.03049 1.25356 0.97201 1.02749 0.95199 1.86546 1.37133 1.71770 1.40698 0.85000 0.78095 0.75653 0.79231 1.17055 1.20072 1.14455 1.18071 0.78073 0.94998 1.00580 1.91477 1.35233 1.91567 1.94004 1.68111 1.24486 1.36861 1.00976 1.25560 0.86973 0.80956 0.99956 1.68153 1.16294 1.23254 1.16264 1.24188 0.99484 0.99104 0.92972 1.84344 1.63319 1.06270 0.96154 0.91137 0.89078 0.91245 0.91041 0.89061 0.91069 0.91167 0.89094 0.91044 0.81550 0.82473 0.80064 0.81562 0.87812 0.75857 0.73621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.46 2.42 8.65 113.37 0.98 3.40 16 2 Si 1.21 -7.89 14.26 68.60 0.98 -6.91 16 3 C -0.46 2.66 8.65 113.37 0.98 3.64 16 4 C -0.46 2.59 8.65 113.37 0.98 3.57 16 5 C -0.34 -1.14 12.14 74.32 0.90 -0.23 16 6 C -0.18 -1.52 13.64 30.01 0.41 -1.11 16 7 C -0.09 -0.82 6.15 22.46 0.14 -0.68 16 8 C -0.07 -0.62 10.19 22.86 0.23 -0.39 16 9 C -0.20 -2.14 6.08 -20.31 -0.12 -2.27 16 10 C 0.41 4.33 7.56 85.51 0.65 4.98 16 11 O -0.23 -2.32 9.80 -30.94 -0.30 -2.63 16 12 C 0.03 0.18 5.02 22.54 0.11 0.29 16 13 C -0.08 0.03 9.99 22.36 0.22 0.26 16 14 C -0.09 0.52 10.04 22.26 0.22 0.75 16 15 C -0.09 0.36 8.66 22.28 0.19 0.55 16 16 C -0.15 -0.28 5.26 -19.83 -0.10 -0.39 16 17 C -0.10 -0.10 2.45 71.24 0.17 0.07 16 18 O -0.55 -1.62 12.88 -148.98 -1.92 -3.54 16 19 Si 1.00 -3.78 25.49 68.60 1.75 -2.03 16 20 H -0.25 0.83 7.11 99.48 0.71 1.54 16 21 H -0.28 -0.20 7.11 99.48 0.71 0.51 16 22 H -0.22 1.74 6.73 99.48 0.67 2.41 16 23 C 0.10 0.82 7.23 22.46 0.16 0.98 16 24 F -0.14 -2.00 16.60 44.97 0.75 -1.26 16 25 N -0.57 -4.92 9.42 -311.71 -2.94 -7.86 16 26 C 0.36 1.96 12.26 180.94 2.22 4.18 16 27 N -0.52 -4.86 10.47 -195.87 -2.05 -6.91 16 28 C 0.09 0.97 7.69 84.83 0.65 1.62 16 29 S 0.23 1.80 23.16 -56.49 -1.31 0.49 16 30 H 0.07 -0.29 7.96 -2.39 -0.02 -0.31 16 31 H 0.09 -0.67 7.96 -2.39 -0.02 -0.69 16 32 H 0.07 -0.27 7.96 -2.39 -0.02 -0.29 16 33 H 0.07 -0.35 7.96 -2.39 -0.02 -0.37 16 34 H 0.09 -0.71 7.96 -2.39 -0.02 -0.73 16 35 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 36 H 0.07 -0.31 7.96 -2.39 -0.02 -0.33 16 37 H 0.09 -0.69 7.96 -2.39 -0.02 -0.71 16 38 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 39 H 0.17 1.05 8.06 -2.91 -0.02 1.03 16 40 H 0.16 -0.59 8.06 -2.91 -0.02 -0.61 16 41 H 0.18 -2.32 8.06 -2.91 -0.02 -2.34 16 42 H 0.17 -1.63 4.88 -2.91 -0.01 -1.64 16 43 H 0.10 0.33 7.90 -2.39 -0.02 0.31 16 44 H 0.39 -2.20 8.70 -74.06 -0.64 -2.85 16 45 H 0.25 -0.86 8.06 -2.91 -0.02 -0.88 16 Total: 0.00 -23.19 418.73 5.10 -18.09 By element: Atomic # 1 Polarization: -7.82 SS G_CDS: 1.14 Total: -6.67 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 9.01 Total: 19.22 kcal Atomic # 7 Polarization: -9.78 SS G_CDS: -4.99 Total: -14.77 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: -2.22 Total: -6.17 kcal Atomic # 9 Polarization: -2.00 SS G_CDS: 0.75 Total: -1.26 kcal Atomic # 14 Polarization: -11.66 SS G_CDS: 2.73 Total: -8.94 kcal Atomic # 16 Polarization: 1.80 SS G_CDS: -1.31 Total: 0.49 kcal Total: -23.19 5.10 -18.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_11948470_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.899 kcal (2) G-P(sol) polarization free energy of solvation -23.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds