Wall clock time and date at job start Thu Mar 4 2021 14:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42896 * 1 3 3 Si 1.86301 * 109.46974 * 2 1 4 4 C 1.50701 * 109.47417 * 120.00123 * 2 1 3 5 5 C 1.38604 * 120.72099 * 244.72454 * 4 2 1 6 6 N 1.32276 * 119.19463 * 179.71476 * 5 4 2 7 7 C 1.32487 * 120.74116 * 0.56805 * 6 5 4 8 8 N 1.38405 * 119.21595 * 179.72738 * 7 6 5 9 9 C 1.46497 * 120.00405 * 359.97438 * 8 7 6 10 10 C 1.52998 * 109.47586 * 180.02562 * 9 8 7 11 11 H 1.08997 * 112.84567 * 314.66524 * 10 9 8 12 12 C 1.53780 * 113.61550 * 85.86014 * 10 9 8 13 13 C 1.53954 * 87.01798 * 139.95305 * 12 10 9 14 14 H 1.09005 * 113.61457 * 89.20150 * 13 12 10 15 15 C 1.50700 * 113.66538 * 220.06798 * 13 12 10 16 16 C 1.38237 * 120.00372 * 37.28895 * 15 13 12 17 17 C 1.38230 * 119.99914 * 179.81134 * 16 15 13 18 18 C 1.38233 * 120.00452 * 0.41522 * 17 16 15 19 19 C 1.38238 * 119.99694 * 359.81599 * 18 17 16 20 20 C 1.38231 * 120.00048 * 359.97438 * 19 18 17 21 21 C 1.53778 * 87.11543 * 334.63728 * 13 12 10 22 22 N 1.32494 * 121.56736 * 359.70338 * 7 6 5 23 23 C 1.32272 * 120.73883 * 0.02562 * 22 7 6 24 24 H 0.96708 * 114.00101 * 299.99304 * 1 2 3 25 25 H 1.09002 * 109.46984 * 240.00143 * 2 1 3 26 26 H 1.48493 * 110.00101 * 300.00094 * 3 2 1 27 27 H 1.48502 * 109.99925 * 61.32089 * 3 2 1 28 28 H 1.08001 * 120.40126 * 0.02562 * 5 4 2 29 29 H 0.97004 * 120.00156 * 179.97438 * 8 7 6 30 30 H 1.09006 * 109.47119 * 300.00013 * 9 8 7 31 31 H 1.09001 * 109.47211 * 59.99849 * 9 8 7 32 32 H 1.08994 * 113.61570 * 254.53238 * 12 10 9 33 33 H 1.09003 * 113.61189 * 25.43650 * 12 10 9 34 34 H 1.08000 * 119.99394 * 359.97438 * 16 15 13 35 35 H 1.08006 * 119.99720 * 180.21145 * 17 16 15 36 36 H 1.07997 * 120.00286 * 179.79365 * 18 17 16 37 37 H 1.08000 * 120.00174 * 179.97438 * 19 18 17 38 38 H 1.08005 * 119.99858 * 179.97438 * 20 19 18 39 39 H 1.09004 * 113.61696 * 270.81588 * 21 13 12 40 40 H 1.08995 * 113.69211 * 139.91797 * 21 13 12 41 41 H 1.07995 * 120.40412 * 180.02562 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.6471 -0.0263 2.2004 6 7 3.0688 -0.6785 3.2712 7 6 2.8237 -1.9724 3.4162 8 7 3.2847 -2.6247 4.5465 9 6 4.0344 -1.8849 5.5648 10 6 4.4245 -2.8331 6.7004 11 1 3.6023 -3.4748 7.0171 12 6 5.7363 -3.5937 6.4446 13 6 6.0641 -3.3663 7.9316 14 1 5.6919 -4.1544 8.5863 15 6 7.5101 -3.0275 8.1872 16 6 8.2003 -2.2265 7.2967 17 6 9.5255 -1.9126 7.5333 18 6 10.1631 -2.4065 8.6560 19 6 9.4743 -3.2113 9.5441 20 6 8.1478 -3.5218 9.3098 21 6 5.1453 -2.1350 7.8657 22 7 2.1474 -2.6566 2.5052 23 6 1.6930 -2.0635 1.4138 24 1 -0.3934 0.4416 0.7652 25 1 1.7923 -0.5138 -0.8900 26 1 1.5614 2.4679 -1.2084 27 1 1.5878 2.4585 1.2243 28 1 2.8535 1.0276 2.0858 29 1 3.1113 -3.5718 4.6646 30 1 4.9351 -1.4635 5.1182 31 1 3.4140 -1.0803 5.9597 32 1 5.5897 -4.6419 6.1842 33 1 6.4143 -3.0783 5.7643 34 1 7.7033 -1.8440 6.4175 35 1 10.0638 -1.2840 6.8393 36 1 11.1994 -2.1639 8.8391 37 1 9.9725 -3.5976 10.4210 38 1 7.6098 -4.1509 10.0034 39 1 5.6613 -1.2201 7.5746 40 1 4.5217 -2.0061 8.7503 41 1 1.1420 -2.6263 0.6749 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_12130086_12175864.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:47:21 Heat of formation + Delta-G solvation = 83.946859 kcal Electronic energy + Delta-G solvation = -22556.958910 eV Core-core repulsion = 19211.558637 eV Total energy + Delta-G solvation = -3345.400273 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 298.142 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.09951 -41.09896 -39.12609 -38.19482 -36.51876 -34.74129 -32.98475 -31.91406 -31.70704 -28.79724 -26.66505 -26.28615 -25.88474 -24.43968 -23.52062 -23.07533 -21.79387 -20.25114 -19.32619 -18.69504 -18.18077 -17.77955 -16.79989 -16.59262 -16.19059 -16.15372 -15.98685 -15.73641 -15.67784 -15.34767 -14.68761 -14.61104 -14.46462 -14.21004 -14.01574 -13.97976 -13.36823 -13.18585 -13.06605 -12.67252 -12.37289 -12.26285 -12.01564 -11.92354 -11.73992 -11.51083 -11.48036 -11.24400 -11.05231 -10.69224 -10.05963 -9.81121 -9.53386 -9.10202 -4.90510 0.04886 0.13991 0.44873 0.50874 1.32295 1.60460 1.83865 1.98196 2.78855 2.85470 3.15531 3.43397 3.55293 3.60355 3.61647 3.67942 3.74460 3.87655 4.00071 4.06224 4.12790 4.19161 4.22382 4.28251 4.32338 4.50251 4.63721 4.64354 4.65793 4.74528 4.75953 4.83839 4.89204 4.94804 5.07968 5.13426 5.16315 5.22496 5.27089 5.48635 5.60399 5.65197 5.75027 5.79104 6.03832 6.13995 6.40351 6.49371 7.27150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.056 4.056 3 Si 0.759 3.241 4 C -0.285 4.285 5 C 0.192 3.808 6 N -0.579 5.579 7 C 0.550 3.450 8 N -0.690 5.690 9 C 0.153 3.847 10 C -0.114 4.114 11 H 0.106 0.894 12 C -0.125 4.125 13 C -0.073 4.073 14 H 0.105 0.895 15 C -0.079 4.079 16 C -0.127 4.127 17 C -0.131 4.131 18 C -0.139 4.139 19 C -0.131 4.131 20 C -0.131 4.131 21 C -0.114 4.114 22 N -0.591 5.591 23 C 0.213 3.787 24 H 0.385 0.615 25 H 0.132 0.868 26 H -0.299 1.299 27 H -0.279 1.279 28 H 0.186 0.814 29 H 0.418 0.582 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.245 0.411 1.010 2.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.355 6.355 2 C -0.167 4.167 3 Si 0.664 3.336 4 C -0.293 4.293 5 C 0.025 3.975 6 N -0.303 5.303 7 C 0.193 3.807 8 N -0.327 5.327 9 C 0.029 3.971 10 C -0.133 4.133 11 H 0.125 0.875 12 C -0.162 4.162 13 C -0.091 4.091 14 H 0.123 0.877 15 C -0.079 4.079 16 C -0.144 4.144 17 C -0.148 4.148 18 C -0.157 4.157 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.152 4.152 22 N -0.313 5.313 23 C 0.046 3.954 24 H 0.234 0.766 25 H 0.149 0.851 26 H -0.227 1.227 27 H -0.206 1.206 28 H 0.202 0.798 29 H 0.256 0.744 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.148 0.852 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.150 0.850 39 H 0.103 0.897 40 H 0.097 0.903 41 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.587 0.537 1.489 3.033 hybrid contribution -1.406 -0.110 -0.147 1.418 sum 1.181 0.427 1.342 1.838 Atomic orbital electron populations 1.86589 1.18540 1.80256 1.50102 1.24856 0.83184 1.11210 0.97419 0.94243 0.90225 0.72221 0.76875 1.21678 1.08623 0.97325 1.01716 1.23207 0.87812 1.00251 0.86216 1.67973 1.27979 1.08366 1.25944 1.19682 0.87528 0.85897 0.87574 1.44266 1.58265 1.12419 1.17733 1.21330 0.95208 0.93966 0.86571 1.22723 0.97697 0.97875 0.94991 0.87548 1.23188 0.96413 1.01159 0.95478 1.21543 0.90361 0.99160 0.98016 0.87722 1.19933 0.95913 0.97243 0.94784 1.21207 0.94722 0.98751 0.99767 1.21434 0.95288 1.00143 0.97979 1.21441 1.00822 0.98308 0.95127 1.21438 0.94979 0.98464 0.99988 1.21334 0.95176 1.00633 0.97775 1.22959 0.97198 0.97028 0.97977 1.68008 1.17446 1.40683 1.05196 1.23166 0.89115 0.91695 0.91464 0.76578 0.85058 1.22715 1.20572 0.79801 0.74351 0.91666 0.91991 0.90824 0.89803 0.85189 0.84881 0.84980 0.84901 0.85046 0.89655 0.90305 0.79982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.16 12.85 -148.98 -1.91 -2.08 16 2 C -0.06 0.17 2.83 71.24 0.20 0.37 16 3 Si 0.76 -3.05 29.94 68.60 2.05 -0.99 16 4 C -0.29 0.10 5.36 -19.69 -0.11 0.00 16 5 C 0.19 0.14 9.92 84.71 0.84 0.98 16 6 N -0.58 -2.95 9.59 -197.99 -1.90 -4.85 16 7 C 0.55 3.15 8.42 261.49 2.20 5.35 16 8 N -0.69 -0.88 5.70 -351.05 -2.00 -2.89 16 9 C 0.15 -0.23 5.47 86.38 0.47 0.24 16 10 C -0.11 0.55 3.75 -10.27 -0.04 0.51 16 11 H 0.11 -0.63 8.14 -2.39 -0.02 -0.65 16 12 C -0.13 0.46 7.02 31.18 0.22 0.68 16 13 C -0.07 0.21 3.98 -10.96 -0.04 0.16 16 14 H 0.10 -0.42 8.09 -2.38 -0.02 -0.44 16 15 C -0.08 -0.08 5.29 -19.86 -0.11 -0.18 16 16 C -0.13 -0.16 8.63 22.27 0.19 0.04 16 17 C -0.13 -0.22 10.05 22.27 0.22 0.01 16 18 C -0.14 -0.26 10.05 22.27 0.22 -0.04 16 19 C -0.13 -0.23 10.05 22.27 0.22 -0.01 16 20 C -0.13 -0.20 9.71 22.27 0.22 0.01 16 21 C -0.11 0.45 7.11 31.12 0.22 0.68 16 22 N -0.59 -3.65 10.46 -198.00 -2.07 -5.72 16 23 C 0.21 0.48 10.99 84.71 0.93 1.41 16 24 H 0.39 -1.79 8.70 -74.05 -0.64 -2.44 16 25 H 0.13 -0.69 7.96 -2.39 -0.02 -0.71 16 26 H -0.30 -1.17 7.11 99.48 0.71 -0.46 16 27 H -0.28 0.12 7.03 99.48 0.70 0.82 16 28 H 0.19 -0.81 5.01 -2.91 -0.01 -0.82 16 29 H 0.42 -0.36 8.59 -92.71 -0.80 -1.16 16 30 H 0.07 -0.02 7.87 -2.38 -0.02 -0.04 16 31 H 0.06 0.02 8.14 -2.39 -0.02 0.00 16 32 H 0.07 -0.27 8.14 -2.39 -0.02 -0.29 16 33 H 0.08 -0.21 6.08 -2.39 -0.01 -0.22 16 34 H 0.13 -0.18 6.65 -2.91 -0.02 -0.20 16 35 H 0.13 -0.22 8.06 -2.91 -0.02 -0.25 16 36 H 0.13 -0.19 8.06 -2.91 -0.02 -0.21 16 37 H 0.13 -0.21 8.06 -2.91 -0.02 -0.23 16 38 H 0.13 -0.22 8.06 -2.91 -0.02 -0.24 16 39 H 0.08 -0.26 7.69 -2.39 -0.02 -0.28 16 40 H 0.08 -0.36 8.14 -2.39 -0.02 -0.37 16 41 H 0.18 -0.29 8.06 -2.91 -0.02 -0.31 16 Total: 0.00 -14.54 340.81 -0.31 -14.85 By element: Atomic # 1 Polarization: -8.17 SS G_CDS: -0.35 Total: -8.52 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: 5.88 Total: 10.20 kcal Atomic # 7 Polarization: -7.49 SS G_CDS: -5.97 Total: -13.46 kcal Atomic # 8 Polarization: -0.16 SS G_CDS: -1.91 Total: -2.08 kcal Atomic # 14 Polarization: -3.05 SS G_CDS: 2.05 Total: -0.99 kcal Total: -14.54 -0.31 -14.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_12130086_12175864.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.795 kcal (2) G-P(sol) polarization free energy of solvation -14.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds