Wall clock time and date at job start Thu Mar 4 2021 14:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86303 * 109.46928 * 2 1 4 4 C 1.50693 * 109.47773 * 120.00148 * 2 1 3 5 5 C 1.33328 * 125.95024 * 64.99787 * 4 2 1 6 6 N 1.32126 * 114.58008 * 180.02562 * 5 4 2 7 7 C 1.29682 * 116.86346 * 0.02562 * 6 5 4 8 8 N 1.38616 * 124.94487 * 179.97438 * 7 6 5 9 9 C 1.46497 * 120.00332 * 0.02562 * 8 7 6 10 10 C 1.52990 * 109.47171 * 179.97438 * 9 8 7 11 11 H 1.09000 * 112.90908 * 43.75361 * 10 9 8 12 12 C 1.53786 * 113.61464 * 174.99989 * 10 9 8 13 13 C 1.53781 * 87.17350 * 140.02626 * 12 10 9 14 14 H 1.09003 * 113.61462 * 89.16045 * 13 12 10 15 15 C 1.50698 * 113.61793 * 219.97800 * 13 12 10 16 16 C 1.38239 * 119.99609 * 59.72284 * 15 13 12 17 17 C 1.38234 * 119.99832 * 179.79337 * 16 15 13 18 18 C 1.38244 * 119.99869 * 0.46122 * 17 16 15 19 19 C 1.38229 * 119.99956 * 359.77181 * 18 17 16 20 20 C 1.38229 * 120.00282 * 240.00600 * 15 13 12 21 21 C 1.53781 * 87.08070 * 334.52830 * 13 12 10 22 22 S 1.70964 * 110.10231 * 0.24005 * 7 6 5 23 23 H 0.96708 * 113.99414 * 299.99277 * 1 2 3 24 24 H 1.09003 * 109.47139 * 240.00752 * 2 1 3 25 25 H 1.48494 * 110.00001 * 178.68709 * 3 2 1 26 26 H 1.48503 * 109.99979 * 300.00247 * 3 2 1 27 27 H 1.07998 * 122.71238 * 0.02685 * 5 4 2 28 28 H 0.97003 * 119.99492 * 180.02562 * 8 7 6 29 29 H 1.09007 * 109.46596 * 60.00225 * 9 8 7 30 30 H 1.08994 * 109.47005 * 300.00535 * 9 8 7 31 31 H 1.09002 * 113.61357 * 25.43543 * 12 10 9 32 32 H 1.09002 * 113.61608 * 254.61705 * 12 10 9 33 33 H 1.08004 * 120.00241 * 0.02562 * 16 15 13 34 34 H 1.07994 * 120.00305 * 180.25823 * 17 16 15 35 35 H 1.07995 * 119.99715 * 179.79543 * 18 17 16 36 36 H 1.08001 * 120.00301 * 179.97438 * 19 18 17 37 37 H 1.08005 * 120.00151 * 359.97197 * 20 15 13 38 38 H 1.09005 * 113.61471 * 139.98321 * 21 13 12 39 39 H 1.08996 * 113.61178 * 270.79663 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9315 -0.7104 1.2303 5 6 1.7624 -2.0025 1.5120 6 7 2.2976 -2.3903 2.6561 7 6 2.9103 -1.4845 3.3532 8 7 3.5290 -1.7055 4.5737 9 6 3.5210 -3.0449 5.1671 10 6 4.2668 -3.0155 6.5026 11 1 4.0093 -2.1502 7.1134 12 6 4.2121 -4.3480 7.2683 13 6 5.6842 -4.1065 7.6416 14 1 5.8136 -3.5402 8.5639 15 6 6.5308 -5.3524 7.5964 16 6 6.6578 -6.0592 6.4152 17 6 7.4377 -7.1997 6.3726 18 6 8.0831 -7.6387 7.5137 19 6 7.9522 -6.9346 8.6960 20 6 7.1756 -5.7917 8.7374 21 6 5.7839 -3.2475 6.3699 22 16 2.8372 0.0235 2.5510 23 1 -0.3933 0.4417 0.7652 24 1 1.7923 -0.5137 -0.8901 25 1 3.5345 1.7704 0.0320 26 1 1.5613 2.4679 -1.2085 27 1 1.2309 -2.6778 0.8579 28 1 3.9673 -0.9733 5.0349 29 1 4.0136 -3.7444 4.4917 30 1 2.4917 -3.3630 5.3322 31 1 4.0613 -5.2152 6.6253 32 1 3.5366 -4.3328 8.1236 33 1 6.1506 -5.7183 5.5246 34 1 7.5403 -7.7496 5.4489 35 1 8.6897 -8.5316 7.4812 36 1 8.4560 -7.2778 9.5875 37 1 7.0731 -5.2418 9.6613 38 1 6.3773 -2.3424 6.4998 39 1 6.0643 -3.8135 5.4816 There are 52 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 52 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_12130086_15704118.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 14:47:27 Heat of formation + Delta-G solvation = 66.988878 kcal Electronic energy + Delta-G solvation = -20963.954738 eV Core-core repulsion = 17772.397269 eV Total energy + Delta-G solvation = -3191.557469 eV No. of doubly occupied orbitals = 52 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 303.103 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.28249 -40.58865 -39.14243 -37.91798 -36.37943 -32.48923 -31.79834 -31.28685 -28.98658 -26.80919 -26.33764 -25.07808 -24.01097 -23.56406 -22.02456 -20.79259 -20.32658 -19.58514 -18.13282 -17.90678 -16.98813 -16.83285 -16.52780 -16.10288 -16.01852 -15.77819 -15.69030 -15.30428 -14.89924 -14.71051 -14.48513 -14.25629 -14.00310 -13.96060 -13.52177 -13.19252 -12.86716 -12.74626 -12.45143 -12.31232 -12.09862 -12.00640 -11.61372 -11.55448 -11.33572 -11.06104 -10.76322 -10.20338 -10.13192 -9.81697 -9.56229 -8.71105 -5.12779 0.01100 0.06791 0.43255 0.50296 0.72299 1.28082 1.60615 1.92668 2.07410 2.14768 2.83377 3.42680 3.42997 3.45483 3.49878 3.79733 3.86827 3.96360 3.97160 4.04452 4.12011 4.13877 4.24181 4.37846 4.50058 4.56184 4.60031 4.65754 4.70838 4.72758 4.78020 4.83523 4.90833 5.02832 5.10239 5.13118 5.16311 5.34532 5.58058 5.64152 5.73095 5.84141 6.05802 6.10358 6.54613 7.04374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.537 6.537 2 C -0.010 4.010 3 Si 0.657 3.343 4 C -0.308 4.308 5 C 0.120 3.880 6 N -0.552 5.552 7 C 0.327 3.673 8 N -0.691 5.691 9 C 0.146 3.854 10 C -0.127 4.127 11 H 0.099 0.901 12 C -0.117 4.117 13 C -0.073 4.073 14 H 0.099 0.901 15 C -0.072 4.072 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.124 4.124 19 C -0.118 4.118 20 C -0.117 4.117 21 C -0.128 4.128 22 S 0.083 5.917 23 H 0.379 0.621 24 H 0.122 0.878 25 H -0.242 1.242 26 H -0.236 1.236 27 H 0.175 0.825 28 H 0.414 0.586 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.071 0.929 39 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.822 1.908 3.776 4.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.343 6.343 2 C -0.124 4.124 3 Si 0.557 3.443 4 C -0.431 4.431 5 C -0.031 4.031 6 N -0.278 5.278 7 C -0.044 4.044 8 N -0.331 5.331 9 C 0.020 3.980 10 C -0.146 4.146 11 H 0.117 0.883 12 C -0.155 4.155 13 C -0.091 4.091 14 H 0.117 0.883 15 C -0.072 4.072 16 C -0.135 4.135 17 C -0.136 4.136 18 C -0.142 4.142 19 C -0.136 4.136 20 C -0.135 4.135 21 C -0.166 4.166 22 S 0.332 5.668 23 H 0.227 0.773 24 H 0.139 0.861 25 H -0.166 1.166 26 H -0.160 1.160 27 H 0.192 0.808 28 H 0.252 0.748 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.139 0.861 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.140 0.860 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.737 2.481 3.294 4.474 hybrid contribution -0.098 -1.012 -0.392 1.090 sum 1.639 1.469 2.901 3.642 Atomic orbital electron populations 1.86515 1.16970 1.81700 1.49099 1.24109 0.84789 1.08903 0.94642 0.94983 0.81988 0.77978 0.89305 1.25551 1.15330 0.98274 1.03923 1.21329 0.96516 0.93158 0.92094 1.66488 1.18887 1.33634 1.08746 1.23754 0.95393 0.93157 0.92078 1.44063 1.59253 1.12386 1.17407 1.21421 1.00976 0.82860 0.92744 1.22863 0.96064 0.99655 0.95975 0.88281 1.22992 0.95676 0.96739 1.00092 1.21480 0.94516 0.93947 0.99200 0.88289 1.19699 0.97688 0.96247 0.93569 1.21014 0.99325 0.95523 0.97644 1.21183 0.97257 0.96651 0.98499 1.21199 0.99927 1.00032 0.93084 1.21189 0.98813 0.95495 0.98124 1.21080 0.97550 0.96940 0.97933 1.23252 0.95316 1.00072 0.97925 1.83914 1.56133 1.11365 1.15362 0.77300 0.86132 1.16617 1.15963 0.80786 0.74849 0.91269 0.91159 0.89330 0.90661 0.86108 0.86043 0.86088 0.86029 0.86128 0.91018 0.89347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.25 12.88 -35.23 -0.45 -0.71 16 2 C -0.01 0.00 2.99 36.00 0.11 0.11 16 3 Si 0.66 -0.31 31.07 -169.99 -5.28 -5.60 16 4 C -0.31 -0.31 5.73 -36.03 -0.21 -0.52 16 5 C 0.12 0.27 11.24 -19.14 -0.22 0.06 16 6 N -0.55 -1.80 10.14 -15.21 -0.15 -1.96 16 7 C 0.33 0.47 8.09 -87.68 -0.71 -0.24 16 8 N -0.69 0.61 5.71 -62.30 -0.36 0.25 16 9 C 0.15 -0.17 5.79 -4.05 -0.02 -0.19 16 10 C -0.13 0.35 3.76 -89.67 -0.34 0.01 16 11 H 0.10 -0.35 8.14 -51.93 -0.42 -0.77 16 12 C -0.12 0.24 7.10 -25.92 -0.18 0.06 16 13 C -0.07 0.11 3.98 -90.96 -0.36 -0.25 16 14 H 0.10 -0.21 8.09 -51.93 -0.42 -0.63 16 15 C -0.07 -0.02 5.29 -104.63 -0.55 -0.58 16 16 C -0.12 -0.06 8.60 -39.58 -0.34 -0.40 16 17 C -0.12 -0.09 10.05 -39.58 -0.40 -0.49 16 18 C -0.12 -0.10 10.05 -39.58 -0.40 -0.50 16 19 C -0.12 -0.08 10.05 -39.58 -0.40 -0.48 16 20 C -0.12 -0.07 9.71 -39.58 -0.38 -0.45 16 21 C -0.13 0.28 7.02 -25.78 -0.18 0.10 16 22 S 0.08 0.01 20.59 -107.50 -2.21 -2.21 16 23 H 0.38 -1.19 8.70 45.56 0.40 -0.79 16 24 H 0.12 0.02 7.96 -51.93 -0.41 -0.39 16 25 H -0.24 -0.44 7.11 56.52 0.40 -0.04 16 26 H -0.24 -0.50 7.11 56.52 0.40 -0.10 16 27 H 0.18 0.20 8.06 -52.49 -0.42 -0.23 16 28 H 0.41 -1.25 8.60 -40.82 -0.35 -1.60 16 29 H 0.07 0.00 7.85 -51.93 -0.41 -0.41 16 30 H 0.07 0.00 8.14 -51.93 -0.42 -0.43 16 31 H 0.09 -0.13 7.67 -51.93 -0.40 -0.53 16 32 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 33 H 0.12 -0.08 6.68 -52.48 -0.35 -0.43 16 34 H 0.12 -0.08 8.06 -52.49 -0.42 -0.51 16 35 H 0.12 -0.09 8.06 -52.49 -0.42 -0.51 16 36 H 0.12 -0.11 8.06 -52.49 -0.42 -0.53 16 37 H 0.12 -0.12 8.06 -52.48 -0.42 -0.54 16 38 H 0.07 -0.17 8.14 -51.93 -0.42 -0.59 16 39 H 0.09 -0.13 6.09 -51.93 -0.32 -0.45 16 LS Contribution 338.53 15.07 5.10 5.10 Total: 0.00 -5.74 338.53 -13.20 -18.94 By element: Atomic # 1 Polarization: -4.78 SS G_CDS: -5.26 Total: -10.05 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: -4.58 Total: -3.78 kcal Atomic # 7 Polarization: -1.20 SS G_CDS: -0.51 Total: -1.71 kcal Atomic # 8 Polarization: -0.25 SS G_CDS: -0.45 Total: -0.71 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: -5.28 Total: -5.60 kcal Atomic # 16 Polarization: 0.01 SS G_CDS: -2.21 Total: -2.21 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -5.74 -13.20 -18.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_12130086_15704118.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.927 kcal (2) G-P(sol) polarization free energy of solvation -5.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds