Wall clock time and date at job start Thu Mar 4 2021 12:30:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86300 * 1 3 3 C 1.86301 * 109.46904 * 2 1 4 4 C 1.86296 * 109.47391 * 239.99516 * 2 1 3 5 5 C 1.90003 * 109.46780 * 119.99657 * 2 1 3 6 6 C 3.07399 * 109.46777 * 119.99561 * 2 1 3 7 7 C 4.50598 * 109.46907 * 119.99682 * 2 1 3 8 8 C 1.33569 * 124.39351 * 50.70376 * 7 6 5 9 9 C 1.44684 * 114.57076 * 180.02562 * 8 7 6 10 10 C 1.41839 * 130.33409 * 179.97438 * 9 8 7 11 11 O 1.35418 * 120.52231 * 0.04585 * 10 9 8 12 12 C 1.35952 * 118.00088 * 174.92476 * 11 10 9 13 13 C 1.38680 * 120.05106 * 265.65916 * 12 11 10 14 14 C 1.38201 * 120.00968 * 179.97438 * 13 12 11 15 15 C 1.38215 * 120.11902 * 359.97288 * 14 13 12 16 16 C 1.50703 * 119.94691 * 180.02562 * 15 14 13 17 17 O 1.42902 * 109.47073 * 255.00025 * 16 15 14 18 18 Si 1.86301 * 109.46791 * 135.00511 * 16 15 14 19 19 H 1.48489 * 109.47583 * 59.99869 * 18 16 15 20 20 H 1.48501 * 109.46751 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.47051 * 299.99266 * 18 16 15 22 22 C 1.38495 * 120.10509 * 0.02787 * 15 14 13 23 23 F 1.35097 * 120.00816 * 180.02562 * 22 15 14 24 24 C 1.38508 * 119.98461 * 359.73943 * 22 15 14 25 25 F 1.35093 * 120.05803 * 180.25386 * 24 22 15 26 26 N 1.32309 * 118.95617 * 180.02562 * 10 9 8 27 27 C 1.32085 * 121.22025 * 359.97438 * 26 10 9 28 28 N 1.31327 * 122.21308 * 0.02562 * 27 26 10 29 29 C 1.33809 * 121.04312 * 359.97438 * 28 27 26 30 30 S 1.75353 * 124.38617 * 231.00295 * 7 6 5 31 31 H 1.09000 * 109.47451 * 300.00603 * 1 2 3 32 32 H 1.09006 * 109.46877 * 60.00137 * 1 2 3 33 33 H 1.09000 * 109.47243 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47056 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47310 * 299.99538 * 3 2 1 36 36 H 1.09002 * 109.47401 * 59.99978 * 3 2 1 37 37 H 1.09000 * 109.47117 * 300.00310 * 4 2 1 38 38 H 1.09006 * 109.46827 * 60.00316 * 4 2 1 39 39 H 1.08996 * 109.47193 * 179.97438 * 4 2 1 40 40 H 1.08006 * 122.71698 * 0.06015 * 8 7 6 41 41 H 1.07998 * 119.99619 * 359.95389 * 13 12 11 42 42 H 1.08005 * 119.93775 * 180.02562 * 14 13 12 43 43 H 1.08999 * 109.47328 * 15.00009 * 16 15 14 44 44 H 0.96699 * 114.00218 * 300.00569 * 17 16 15 45 45 H 1.08001 * 118.89639 * 179.97438 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.4839 1.7565 0.0000 4 6 2.4841 -0.8783 -1.5210 5 6 2.4962 -0.8956 1.5515 6 6 2.8875 -1.4489 2.5101 7 6 3.3648 -2.1240 3.6793 8 6 3.4485 -3.4513 3.8029 9 6 3.9608 -3.9057 5.0774 10 6 4.1848 -5.2203 5.5608 11 8 3.9089 -6.2949 4.7844 12 6 4.2406 -7.5257 5.2569 13 6 5.4549 -8.0988 4.9101 14 6 5.7914 -9.3498 5.3913 15 6 4.9197 -10.0320 6.2191 16 6 5.2909 -11.3957 6.7422 17 8 4.5482 -12.3939 6.0391 18 14 4.8948 -11.4924 8.5600 19 1 3.4418 -11.2630 8.7630 20 1 5.2599 -12.8365 9.0753 21 1 5.6666 -10.4552 9.2907 22 6 3.7058 -9.4643 6.5686 23 9 2.8555 -10.1326 7.3783 24 6 3.3662 -8.2087 6.0926 25 9 2.1847 -7.6513 6.4368 26 7 4.6679 -5.3799 6.7821 27 6 4.9427 -4.3416 7.5509 28 7 4.7536 -3.1050 7.1511 29 6 4.2687 -2.8404 5.9324 30 16 3.9083 -1.3153 5.1372 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3634 -1.0277 0.0005 34 1 3.5740 1.7565 0.0005 35 1 2.1207 2.2703 -0.8900 36 1 2.1206 2.2704 0.8900 37 1 2.1207 -1.9060 -1.5210 38 1 2.1208 -0.3645 -2.4111 39 1 3.5740 -0.8779 -1.5212 40 1 3.1578 -4.1304 3.0150 41 1 6.1375 -7.5675 4.2635 42 1 6.7376 -9.7948 5.1208 43 1 6.3574 -11.5642 6.5932 44 1 3.5893 -12.3056 6.1273 45 1 5.3354 -4.5153 8.5418 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_13025874_17567452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:30:52 Heat of formation + Delta-G solvation = -36.032869 kcal Electronic energy + Delta-G solvation = -33528.869765 eV Core-core repulsion = 28593.218749 eV Total energy + Delta-G solvation = -4935.651016 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 420.069 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -50.89191 -49.90258 -42.73575 -41.19957 -39.64385 -37.82096 -37.58651 -34.53785 -33.95877 -32.34524 -31.77147 -30.55189 -29.66958 -28.51798 -28.51285 -27.58278 -26.25289 -25.62374 -24.43857 -23.46385 -22.97347 -21.31983 -20.58534 -19.38630 -18.88768 -18.61354 -18.16338 -17.91443 -17.60473 -17.42242 -16.97679 -16.91306 -16.54326 -16.33128 -16.19110 -15.92958 -15.70051 -15.51672 -15.36901 -15.25715 -14.78640 -14.39740 -14.33876 -14.29673 -14.16492 -14.08499 -13.93606 -13.73889 -13.41092 -13.39844 -13.33262 -13.21278 -13.18962 -12.69435 -12.58238 -12.39076 -12.26748 -12.19775 -12.18161 -11.67978 -11.47798 -11.31983 -10.95517 -10.82155 -10.80818 -10.64999 -10.09621 -10.06962 -9.92636 -9.24737 -1.00889 -0.73740 -0.42421 -0.35838 -0.27930 0.42660 0.52942 0.98746 1.22078 1.39304 1.42418 1.46920 1.48468 1.59722 1.89501 2.03247 2.24073 2.30357 2.34068 2.40688 2.56144 2.72154 2.94351 3.02166 3.13821 3.18249 3.29729 3.36980 3.39118 3.59099 3.74355 3.97205 4.14068 4.24149 4.30957 4.56846 4.59712 4.61008 4.61964 4.62193 4.66110 4.66457 4.66721 4.68474 4.75468 4.76821 4.82522 5.18752 5.36181 5.42318 5.45585 5.46132 5.85994 6.29847 6.44553 6.73209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.453 4.453 2 Si 1.145 2.855 3 C -0.453 4.453 4 C -0.453 4.453 5 C -0.352 4.352 6 C -0.130 4.130 7 C -0.081 4.081 8 C -0.063 4.063 9 C -0.183 4.183 10 C 0.416 3.584 11 O -0.223 6.223 12 C 0.080 3.920 13 C -0.088 4.088 14 C -0.066 4.066 15 C -0.112 4.112 16 C -0.079 4.079 17 O -0.529 6.529 18 Si 0.930 3.070 19 H -0.229 1.229 20 H -0.248 1.248 21 H -0.247 1.247 22 C 0.069 3.931 23 F -0.111 7.111 24 C 0.086 3.914 25 F -0.114 7.114 26 N -0.568 5.568 27 C 0.358 3.642 28 N -0.502 5.502 29 C 0.107 3.893 30 S 0.225 5.775 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.161 0.839 41 H 0.153 0.847 42 H 0.157 0.843 43 H 0.130 0.870 44 H 0.378 0.622 45 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.968 1.248 -3.740 4.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.561 4.561 2 Si 1.331 2.669 3 C -0.561 4.561 4 C -0.561 4.561 5 C -0.390 4.390 6 C -0.131 4.131 7 C -0.196 4.196 8 C -0.093 4.093 9 C -0.198 4.198 10 C 0.222 3.778 11 O -0.125 6.125 12 C 0.036 3.964 13 C -0.106 4.106 14 C -0.084 4.084 15 C -0.114 4.114 16 C -0.189 4.189 17 O -0.335 6.335 18 Si 0.750 3.250 19 H -0.151 1.151 20 H -0.172 1.172 21 H -0.170 1.170 22 C 0.049 3.951 23 F -0.089 7.089 24 C 0.065 3.935 25 F -0.092 7.092 26 N -0.299 5.299 27 C 0.067 3.933 28 N -0.221 5.221 29 C -0.143 4.143 30 S 0.490 5.510 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.098 0.902 39 H 0.092 0.908 40 H 0.179 0.821 41 H 0.170 0.830 42 H 0.174 0.826 43 H 0.148 0.852 44 H 0.226 0.774 45 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.682 2.334 -1.781 3.977 hybrid contribution -1.104 -1.354 -0.803 1.923 sum 1.579 0.980 -2.584 3.183 Atomic orbital electron populations 1.26123 1.19790 1.05104 1.05099 0.77094 0.66127 0.64707 0.59001 1.26116 1.06798 1.18050 1.05125 1.26113 1.06783 1.08487 1.14677 1.36315 0.99433 0.99300 1.03946 1.19501 1.00105 0.99525 0.94006 1.19547 1.08342 0.95180 0.96568 1.20867 0.98783 0.94024 0.95665 1.19487 1.11376 0.91284 0.97643 1.20074 0.86281 0.84623 0.86818 1.84698 1.75726 1.11089 1.40977 1.18275 0.94454 0.84582 0.99067 1.21318 0.93594 0.96253 0.99446 1.20894 0.99933 0.93076 0.94529 1.20443 0.92747 0.98870 0.99317 1.24999 1.01214 0.83987 1.08692 1.86571 1.22568 1.49962 1.74351 0.86183 0.83061 0.82206 0.73546 1.15113 1.17157 1.16997 1.17340 0.90579 0.90654 0.96535 1.91630 1.69556 1.78570 1.69186 1.17771 0.84474 0.92469 0.98780 1.91579 1.42689 1.84612 1.90320 1.68028 1.20026 1.37428 1.04420 1.24817 0.89271 0.80812 0.98428 1.68107 1.16736 1.23950 1.13345 1.23978 0.98191 0.98343 0.93831 1.84588 1.63427 1.00043 1.02936 0.90810 0.90232 0.90810 0.90794 0.90206 0.90801 0.90806 0.90233 0.90807 0.82143 0.82974 0.82559 0.85223 0.77405 0.76965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 1.23 8.65 101.05 0.87 2.10 16 2 Si 1.15 -3.94 14.26 -169.99 -2.42 -6.36 16 3 C -0.45 1.29 8.65 101.05 0.87 2.16 16 4 C -0.45 1.30 8.65 101.05 0.87 2.18 16 5 C -0.35 -0.26 12.14 29.55 0.36 0.10 16 6 C -0.13 -0.35 13.64 -38.84 -0.53 -0.88 16 7 C -0.08 -0.22 6.15 -39.29 -0.24 -0.46 16 8 C -0.06 -0.15 10.19 -38.67 -0.39 -0.54 16 9 C -0.18 -0.59 6.08 -105.31 -0.64 -1.23 16 10 C 0.42 1.33 7.58 -15.97 -0.12 1.21 16 11 O -0.22 -0.60 9.80 -2.30 -0.02 -0.62 16 12 C 0.08 0.13 5.00 -39.17 -0.20 -0.07 16 13 C -0.09 0.10 9.98 -39.43 -0.39 -0.30 16 14 C -0.07 0.14 9.66 -39.60 -0.38 -0.24 16 15 C -0.11 0.08 4.78 -104.53 -0.50 -0.42 16 16 C -0.08 0.12 2.81 36.01 0.10 0.22 16 17 O -0.53 0.17 12.88 -35.23 -0.45 -0.28 16 18 Si 0.93 -0.30 26.09 -169.99 -4.43 -4.74 16 19 H -0.23 -0.18 5.29 56.52 0.30 0.12 16 20 H -0.25 -0.18 7.11 56.52 0.40 0.22 16 21 H -0.25 -0.11 7.11 56.52 0.40 0.29 16 22 C 0.07 0.09 6.62 -39.39 -0.26 -0.17 16 23 F -0.11 -0.21 12.51 2.25 0.03 -0.18 16 24 C 0.09 0.22 7.31 -39.24 -0.29 -0.06 16 25 F -0.11 -0.52 17.03 2.25 0.04 -0.48 16 26 N -0.57 -1.59 9.42 -14.16 -0.13 -1.72 16 27 C 0.36 0.57 12.26 -92.30 -1.13 -0.56 16 28 N -0.50 -1.64 10.47 -13.26 -0.14 -1.78 16 29 C 0.11 0.37 7.69 -16.02 -0.12 0.24 16 30 S 0.23 0.49 23.16 -107.50 -2.49 -2.00 16 31 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 32 H 0.08 -0.27 7.96 -51.93 -0.41 -0.68 16 33 H 0.07 -0.17 7.96 -51.93 -0.41 -0.58 16 34 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 35 H 0.08 -0.28 7.96 -51.93 -0.41 -0.69 16 36 H 0.07 -0.18 7.96 -51.93 -0.41 -0.60 16 37 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 38 H 0.08 -0.28 7.96 -51.93 -0.41 -0.69 16 39 H 0.07 -0.19 7.96 -51.93 -0.41 -0.60 16 40 H 0.16 0.12 8.06 -52.48 -0.42 -0.31 16 41 H 0.15 -0.46 8.06 -52.49 -0.42 -0.89 16 42 H 0.16 -0.78 8.00 -52.48 -0.42 -1.20 16 43 H 0.13 -0.46 7.77 -51.93 -0.40 -0.86 16 44 H 0.38 -1.01 8.42 45.56 0.38 -0.63 16 45 H 0.21 -0.47 8.06 -52.49 -0.42 -0.89 16 LS Contribution 423.00 15.07 6.37 6.37 Total: 0.00 -8.19 423.00 -10.10 -18.29 By element: Atomic # 1 Polarization: -5.46 SS G_CDS: -4.33 Total: -9.79 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -2.12 Total: 3.28 kcal Atomic # 7 Polarization: -3.23 SS G_CDS: -0.27 Total: -3.50 kcal Atomic # 8 Polarization: -0.42 SS G_CDS: -0.48 Total: -0.90 kcal Atomic # 9 Polarization: -0.73 SS G_CDS: 0.07 Total: -0.66 kcal Atomic # 14 Polarization: -4.24 SS G_CDS: -6.86 Total: -11.10 kcal Atomic # 16 Polarization: 0.49 SS G_CDS: -2.49 Total: -2.00 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -8.19 -10.10 -18.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_13025874_17567452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.740 kcal (2) G-P(sol) polarization free energy of solvation -8.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds