Wall clock time and date at job start Thu Mar 4 2021 15:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47324 * 2 1 4 4 C 1.50701 * 109.47297 * 119.99699 * 2 1 3 5 5 C 1.38248 * 119.96831 * 119.99945 * 4 2 1 6 6 C 1.38298 * 120.11487 * 179.97438 * 5 4 2 7 7 C 1.50703 * 119.97064 * 180.02562 * 6 5 4 8 8 O 1.42900 * 109.46820 * 64.97891 * 7 6 5 9 9 Si 1.86303 * 109.46961 * 184.97546 * 7 6 5 10 10 H 1.48492 * 109.47215 * 300.00524 * 9 7 6 11 11 H 1.48509 * 109.46886 * 60.00261 * 9 7 6 12 12 H 1.48500 * 109.47180 * 179.97438 * 9 7 6 13 13 C 1.38117 * 120.05667 * 359.97438 * 6 5 4 14 14 C 1.38772 * 119.94151 * 0.02562 * 13 6 5 15 15 O 1.35893 * 120.05761 * 180.02562 * 14 13 6 16 16 C 1.35424 * 118.00159 * 76.84788 * 15 14 13 17 17 C 1.41833 * 120.52206 * 175.15029 * 16 15 14 18 18 C 1.44684 * 130.33004 * 0.02562 * 17 16 15 19 19 C 1.33576 * 114.56248 * 180.02562 * 18 17 16 20 20 C 1.43206 * 124.38524 * 179.97438 * 19 18 17 21 21 C 9.83872 * 98.94529 * 136.20470 * 4 1 2 22 22 Si 9.48251 * 113.99576 * 147.14764 * 14 1 2 23 23 C 1.86299 * 109.46961 * 225.34952 * 22 21 20 24 24 C 1.86300 * 109.47282 * 345.34852 * 22 21 20 25 25 C 1.86298 * 109.47229 * 105.34953 * 22 21 20 26 26 S 1.75343 * 111.22717 * 0.02562 * 19 18 17 27 27 C 1.40030 * 117.53391 * 180.02562 * 17 16 15 28 28 N 1.33813 * 119.03685 * 0.02562 * 27 17 16 29 29 C 1.31323 * 121.03728 * 359.97438 * 28 27 17 30 30 N 1.32095 * 122.21063 * 0.02562 * 29 28 27 31 31 C 1.38154 * 119.97560 * 300.25637 * 4 2 1 32 32 H 1.08997 * 109.47130 * 300.00291 * 1 2 3 33 33 H 1.08997 * 109.47265 * 60.00130 * 1 2 3 34 34 H 1.08997 * 109.46847 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.47569 * 240.00015 * 2 1 3 36 36 H 1.08995 * 109.47312 * 180.02562 * 3 2 1 37 37 H 1.08997 * 109.46843 * 300.00128 * 3 2 1 38 38 H 1.08997 * 109.46785 * 59.99535 * 3 2 1 39 39 H 1.08007 * 119.94695 * 359.95924 * 5 4 2 40 40 H 1.08994 * 109.47347 * 304.97696 * 7 6 5 41 41 H 0.96701 * 113.99789 * 179.97438 * 8 7 6 42 42 H 1.07998 * 120.02952 * 179.97438 * 13 6 5 43 43 H 1.07998 * 122.72256 * 0.02562 * 18 17 16 44 44 H 1.08993 * 109.47462 * 60.00383 * 23 22 21 45 45 H 1.09005 * 109.47306 * 180.02562 * 23 22 21 46 46 H 1.09000 * 109.47190 * 299.99700 * 23 22 21 47 47 H 1.08998 * 109.47331 * 59.99961 * 24 22 21 48 48 H 1.08997 * 109.47098 * 179.97438 * 24 22 21 49 49 H 1.09001 * 109.47012 * 300.00265 * 24 22 21 50 50 H 1.08999 * 109.47279 * 59.99528 * 25 22 21 51 51 H 1.08997 * 109.47398 * 179.97438 * 25 22 21 52 52 H 1.09006 * 109.47016 * 300.00355 * 25 22 21 53 53 H 1.08001 * 118.89322 * 179.72581 * 29 28 27 54 54 H 1.08003 * 120.02579 * 0.02562 * 31 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 6 2.8271 -1.8343 1.1029 6 6 3.2902 -2.4882 2.2301 7 6 4.1569 -3.7128 2.0873 8 8 5.3960 -3.3506 1.4745 9 14 4.4858 -4.4406 3.7704 10 1 5.1815 -3.4376 4.6160 11 1 3.1980 -4.8170 4.4072 12 1 5.3393 -5.6476 3.6297 13 6 2.9601 -2.0193 3.4866 14 6 2.1624 -0.8913 3.6173 15 8 1.8365 -0.4276 4.8524 16 6 2.7776 0.2600 5.5422 17 6 2.4640 0.8557 6.7905 18 6 1.2236 0.8717 7.5352 19 6 1.2792 1.5362 8.6925 20 6 0.1763 1.6847 9.5938 21 6 -0.7335 1.8023 10.3320 22 14 -2.1959 1.9998 11.5272 23 6 -2.0600 0.7358 12.8890 24 6 -2.1696 3.7110 12.2633 25 6 -3.7928 1.7463 10.6018 26 16 2.8773 2.2045 8.9646 27 6 3.4842 1.5524 7.4498 28 7 4.6933 1.6252 6.8812 29 6 4.9321 1.0554 5.7224 30 7 4.0036 0.3874 5.0617 31 6 1.6939 -0.2409 2.4850 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5138 -0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6767 1.9563 -0.8900 38 1 1.6766 1.9563 0.8899 39 1 3.0866 -2.2026 0.1213 40 1 3.6462 -4.4490 1.4666 41 1 6.0052 -4.0914 1.3514 42 1 3.3216 -2.5306 4.3665 43 1 0.3254 0.3857 7.1838 44 1 -1.1257 0.8841 13.4305 45 1 -2.8996 0.8489 13.5748 46 1 -2.0754 -0.2654 12.4583 47 1 -2.2491 4.4506 11.4665 48 1 -3.0093 3.8245 12.9489 49 1 -1.2353 3.8593 12.8047 50 1 -3.8082 0.7452 10.1710 51 1 -4.6322 1.8593 11.2878 52 1 -3.8722 2.4859 9.8049 53 1 5.9195 1.1397 5.2930 54 1 1.0692 0.6345 2.5841 RHF calculation, no. of doubly occupied orbitals= 73 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_13973554_17567452.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 15:03:59 Heat of formation + Delta-G solvation = 34.505731 kcal Electronic energy + Delta-G solvation = -34770.848581 eV Core-core repulsion = 30310.551442 eV Total energy + Delta-G solvation = -4460.297139 eV No. of doubly occupied orbitals = 73 Molecular weight (most abundant/longest-lived isotopes) = 426.135 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -42.86223 -41.44401 -39.80658 -37.95185 -37.93008 -36.12919 -34.64672 -34.02215 -32.23560 -31.18180 -30.46388 -29.44134 -28.27710 -28.27391 -28.03190 -27.03080 -26.77655 -26.02137 -24.32513 -23.50507 -23.00710 -21.11924 -20.68532 -20.06271 -18.57643 -18.38755 -17.96950 -17.84412 -17.51559 -17.09106 -16.91285 -16.55800 -15.96310 -15.77129 -15.59523 -15.44633 -15.24890 -15.08187 -14.72527 -14.52095 -14.43664 -14.34230 -14.14629 -14.11775 -13.87165 -13.82265 -13.50754 -13.39549 -13.15823 -13.14873 -13.11387 -12.97085 -12.94967 -12.78872 -12.67862 -12.44690 -12.38503 -12.23363 -12.13031 -12.07162 -11.98552 -11.84358 -11.71204 -11.69642 -11.38745 -10.80403 -10.80167 -10.66744 -10.42465 -10.07544 -9.90927 -9.85036 -9.38617 -1.15543 -0.53178 -0.44348 -0.18316 0.04596 0.28889 0.38979 1.04690 1.31433 1.34041 1.39117 1.48087 1.60323 1.70017 1.80106 2.25475 2.35952 2.44564 2.48160 2.53017 2.63637 2.94532 3.06163 3.22102 3.32654 3.46080 3.64818 3.74038 3.80149 3.96704 4.07904 4.12174 4.18284 4.22841 4.26174 4.39987 4.46377 4.52359 4.61826 4.74095 4.75802 4.79492 4.85174 4.85425 4.88309 4.90994 4.91213 4.92337 4.93526 4.95313 5.01019 5.10997 5.21092 5.26032 5.31593 5.34082 5.50878 5.51539 5.60708 5.70153 5.70530 6.00068 6.32063 6.61406 6.78351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.053 4.053 3 C -0.145 4.145 4 C -0.060 4.060 5 C -0.077 4.077 6 C -0.066 4.066 7 C -0.066 4.066 8 O -0.556 6.556 9 Si 0.953 3.047 10 H -0.283 1.283 11 H -0.265 1.265 12 H -0.241 1.241 13 C -0.130 4.130 14 C 0.072 3.928 15 O -0.238 6.238 16 C 0.410 3.590 17 C -0.199 4.199 18 C -0.067 4.067 19 C -0.088 4.088 20 C -0.180 4.180 21 C -0.339 4.339 22 Si 1.209 2.791 23 C -0.464 4.464 24 C -0.463 4.463 25 C -0.463 4.463 26 S 0.233 5.767 27 C 0.092 3.908 28 N -0.519 5.519 29 C 0.355 3.645 30 N -0.574 5.574 31 C -0.105 4.105 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.049 0.951 39 H 0.153 0.847 40 H 0.110 0.890 41 H 0.400 0.600 42 H 0.115 0.885 43 H 0.169 0.831 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.069 0.931 47 H 0.070 0.930 48 H 0.090 0.910 49 H 0.070 0.930 50 H 0.070 0.930 51 H 0.090 0.910 52 H 0.070 0.930 53 H 0.243 0.757 54 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.887 -1.601 -1.348 4.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.071 4.071 3 C -0.202 4.202 4 C -0.060 4.060 5 C -0.095 4.095 6 C -0.066 4.066 7 C -0.178 4.178 8 O -0.365 6.365 9 Si 0.780 3.220 10 H -0.208 1.208 11 H -0.190 1.190 12 H -0.165 1.165 13 C -0.149 4.149 14 C 0.030 3.970 15 O -0.140 6.140 16 C 0.216 3.784 17 C -0.213 4.213 18 C -0.097 4.097 19 C -0.204 4.204 20 C -0.182 4.182 21 C -0.374 4.374 22 Si 1.390 2.610 23 C -0.571 4.571 24 C -0.571 4.571 25 C -0.570 4.570 26 S 0.497 5.503 27 C -0.158 4.158 28 N -0.240 5.240 29 C 0.065 3.935 30 N -0.305 5.305 31 C -0.124 4.124 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.077 0.923 35 H 0.115 0.885 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.068 0.932 39 H 0.170 0.830 40 H 0.128 0.872 41 H 0.251 0.749 42 H 0.132 0.868 43 H 0.187 0.813 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.109 0.891 49 H 0.089 0.911 50 H 0.089 0.911 51 H 0.109 0.891 52 H 0.089 0.911 53 H 0.259 0.741 54 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.592 -0.521 0.252 2.656 hybrid contribution -0.459 -1.303 -1.221 1.844 sum -3.051 -1.824 -0.970 3.684 Atomic orbital electron populations 1.21878 0.93483 1.02383 1.02523 1.20204 0.96505 0.96039 0.94393 1.21867 1.01077 0.94924 1.02380 1.19983 0.96406 0.95364 0.94257 1.21263 0.95056 0.93945 0.99226 1.19274 0.97889 0.97393 0.92077 1.24489 0.87241 0.97567 1.08473 1.86468 1.27009 1.40053 1.82960 0.85664 0.80594 0.78964 0.76803 1.20838 1.18984 1.16464 1.21104 0.98863 0.96965 0.97945 1.18482 1.01366 0.94990 0.82125 1.84616 1.35931 1.64966 1.28466 1.20272 0.86658 0.84967 0.86469 1.19641 0.96918 1.07842 0.96933 1.20966 0.97259 0.99255 0.92237 1.19675 0.96598 1.06460 0.97619 1.20062 0.96013 1.03410 0.98730 1.37910 1.02834 0.96267 1.00367 0.76305 0.57697 0.66440 0.60600 1.26244 1.05529 1.12003 1.13366 1.26233 1.05469 1.17830 1.07564 1.26225 1.16503 1.05133 1.09175 1.84356 0.99696 1.53365 1.12883 1.24197 0.92737 0.98215 1.00670 1.68160 1.18846 1.23813 1.13189 1.25495 0.98735 0.84459 0.84859 1.68159 1.00951 1.23835 1.37598 1.21073 1.00773 0.99821 0.90694 0.92905 0.91029 0.92262 0.88498 0.92903 0.90922 0.93196 0.82967 0.87190 0.74884 0.86769 0.81326 0.91140 0.89106 0.91175 0.91097 0.89085 0.91093 0.91109 0.89122 0.91089 0.74084 0.84620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.35 9.00 71.98 0.65 1.00 16 2 C -0.05 0.08 3.09 -11.54 -0.04 0.05 16 3 C -0.15 0.14 9.01 71.98 0.65 0.79 16 4 C -0.06 -0.14 4.78 -19.88 -0.10 -0.23 16 5 C -0.08 -0.15 9.31 22.29 0.21 0.06 16 6 C -0.07 -0.27 5.38 -19.88 -0.11 -0.38 16 7 C -0.07 0.05 2.79 71.24 0.20 0.24 16 8 O -0.56 0.34 12.81 -148.98 -1.91 -1.57 16 9 Si 0.95 1.75 25.14 68.60 1.72 3.47 16 10 H -0.28 -2.18 7.04 99.48 0.70 -1.48 16 11 H -0.27 -1.12 7.11 99.48 0.71 -0.41 16 12 H -0.24 0.04 7.11 99.48 0.71 0.75 16 13 C -0.13 -1.03 8.21 22.37 0.18 -0.85 16 14 C 0.07 0.62 5.18 22.52 0.12 0.74 16 15 O -0.24 -2.50 9.94 -30.56 -0.30 -2.80 16 16 C 0.41 4.58 7.52 85.51 0.64 5.23 16 17 C -0.20 -2.11 6.08 -20.31 -0.12 -2.24 16 18 C -0.07 -0.57 10.19 22.86 0.23 -0.34 16 19 C -0.09 -0.77 6.15 22.46 0.14 -0.63 16 20 C -0.18 -1.44 13.66 29.98 0.41 -1.03 16 21 C -0.34 -1.00 12.16 74.28 0.90 -0.10 16 22 Si 1.21 -8.25 14.25 68.60 0.98 -7.27 16 23 C -0.46 2.62 8.65 113.37 0.98 3.60 16 24 C -0.46 2.70 8.65 113.37 0.98 3.68 16 25 C -0.46 2.71 8.65 113.37 0.98 3.69 16 26 S 0.23 1.76 23.16 -56.49 -1.31 0.46 16 27 C 0.09 0.98 7.69 84.83 0.65 1.63 16 28 N -0.52 -5.27 10.47 -195.86 -2.05 -7.32 16 29 C 0.36 2.53 12.26 180.93 2.22 4.75 16 30 N -0.57 -5.93 9.18 -311.71 -2.86 -8.79 16 31 C -0.11 -0.55 8.65 22.37 0.19 -0.36 16 32 H 0.05 -0.07 7.37 -2.39 -0.02 -0.09 16 33 H 0.07 -0.29 8.14 -2.39 -0.02 -0.31 16 34 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 35 H 0.10 -0.38 7.87 -2.39 -0.02 -0.39 16 36 H 0.05 0.03 8.14 -2.39 -0.02 0.01 16 37 H 0.07 -0.21 8.14 -2.39 -0.02 -0.23 16 38 H 0.05 0.02 7.40 -2.39 -0.02 0.00 16 39 H 0.15 -0.33 7.94 -2.91 -0.02 -0.36 16 40 H 0.11 -0.71 7.96 -2.39 -0.02 -0.73 16 41 H 0.40 -3.92 8.74 -74.06 -0.65 -4.56 16 42 H 0.11 1.01 4.86 -2.91 -0.01 1.00 16 43 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 44 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 45 H 0.09 -0.70 7.96 -2.38 -0.02 -0.72 16 46 H 0.07 -0.32 7.96 -2.39 -0.02 -0.34 16 47 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 48 H 0.09 -0.71 7.96 -2.39 -0.02 -0.73 16 49 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 50 H 0.07 -0.34 7.96 -2.39 -0.02 -0.36 16 51 H 0.09 -0.71 7.96 -2.39 -0.02 -0.73 16 52 H 0.07 -0.35 7.96 -2.38 -0.02 -0.36 16 53 H 0.24 -0.25 8.06 -2.91 -0.02 -0.28 16 54 H 0.14 0.49 7.10 -2.91 -0.02 0.47 16 Total: 0.00 -20.00 472.89 5.29 -14.71 By element: Atomic # 1 Polarization: -11.21 SS G_CDS: 1.04 Total: -10.17 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 9.98 Total: 19.28 kcal Atomic # 7 Polarization: -11.20 SS G_CDS: -4.91 Total: -16.11 kcal Atomic # 8 Polarization: -2.16 SS G_CDS: -2.21 Total: -4.37 kcal Atomic # 14 Polarization: -6.50 SS G_CDS: 2.70 Total: -3.80 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -1.31 Total: 0.46 kcal Total: -20.00 5.29 -14.71 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_13973554_17567452.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.218 kcal (2) G-P(sol) polarization free energy of solvation -19.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.712 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds