Wall clock time and date at job start Thu Mar 4 2021 12:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47071 * 2 1 4 4 C 1.52995 * 109.47157 * 239.99892 * 2 1 3 5 5 O 1.45202 * 109.47039 * 119.99498 * 2 1 3 6 6 C 1.34641 * 116.99839 * 60.00288 * 5 2 1 7 7 O 1.21511 * 120.00195 * 0.02562 * 6 5 2 8 8 N 1.34779 * 120.00092 * 179.97438 * 6 5 2 9 9 C 1.46500 * 120.00157 * 179.97438 * 8 6 5 10 10 C 1.52997 * 109.47028 * 180.02562 * 9 8 6 11 11 F 1.39904 * 112.91005 * 48.74857 * 10 9 8 12 12 C 1.53784 * 113.61330 * 179.97438 * 10 9 8 13 13 C 1.53787 * 87.07923 * 139.97966 * 12 10 9 14 14 H 1.08998 * 113.61103 * 89.12089 * 13 12 10 15 15 N 1.46499 * 113.61131 * 219.93470 * 13 12 10 16 16 C 1.38619 * 119.99569 * 205.00410 * 15 13 12 17 17 N 1.29688 * 124.94912 * 0.02562 * 16 15 13 18 18 C 1.32123 * 116.86449 * 179.97438 * 17 16 15 19 19 C 1.33330 * 114.57809 * 0.02562 * 18 17 16 20 20 C 1.50697 * 125.94953 * 179.97438 * 19 18 17 21 21 O 1.42896 * 109.47355 * 65.00188 * 20 19 18 22 22 Si 1.86305 * 109.47148 * 184.99954 * 20 19 18 23 23 S 1.70969 * 124.94344 * 179.72250 * 16 15 13 24 24 C 1.53778 * 87.08035 * 334.56830 * 13 12 10 25 25 H 1.09004 * 109.47211 * 300.00101 * 1 2 3 26 26 H 1.08990 * 109.47448 * 60.00281 * 1 2 3 27 27 H 1.08997 * 109.46856 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46950 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47029 * 299.99732 * 3 2 1 30 30 H 1.08994 * 109.47298 * 59.99794 * 3 2 1 31 31 H 1.09007 * 109.46812 * 299.99416 * 4 2 1 32 32 H 1.08996 * 109.47517 * 59.99662 * 4 2 1 33 33 H 1.09001 * 109.46947 * 180.02562 * 4 2 1 34 34 H 0.96999 * 119.99872 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.47037 * 60.00029 * 9 8 6 36 36 H 1.08997 * 109.47129 * 300.00403 * 9 8 6 37 37 H 1.09004 * 113.61451 * 25.43452 * 12 10 9 38 38 H 1.08994 * 113.61477 * 254.52754 * 12 10 9 39 39 H 0.96993 * 120.00646 * 25.00150 * 15 13 12 40 40 H 1.07991 * 122.70968 * 179.97438 * 18 17 16 41 41 H 1.08997 * 109.47025 * 304.99871 * 20 19 18 42 42 H 0.96698 * 114.00550 * 180.02562 * 21 20 19 43 43 H 1.48496 * 109.99993 * 178.68320 * 22 20 19 44 44 H 1.48502 * 109.99842 * 300.00290 * 22 20 19 45 45 H 1.08999 * 113.61111 * 139.98327 * 24 13 12 46 46 H 1.08999 * 113.61280 * 270.79710 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 8 2.0140 -0.6844 1.1856 6 6 1.6522 -1.9722 1.3385 7 8 0.9517 -2.5097 0.5037 8 7 2.0680 -2.6656 2.4168 9 6 1.6739 -4.0668 2.5834 10 6 2.2741 -4.6146 3.8797 11 9 2.0571 -3.7752 4.9777 12 6 1.9178 -6.0861 4.1498 13 6 3.3647 -6.2647 4.6394 14 1 3.4941 -6.0616 5.7024 15 7 3.9725 -7.5312 4.2240 16 6 5.0093 -8.0780 4.9641 17 7 5.5142 -7.5521 6.0367 18 6 6.5011 -8.2115 6.6173 19 6 6.8452 -9.3456 6.0065 20 6 7.9318 -10.2927 6.4460 21 8 7.5831 -10.8651 7.7080 22 14 8.1238 -11.6473 5.1814 23 16 5.8036 -9.5475 4.6000 24 6 3.7338 -5.0764 3.7358 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 -1.7490 -1.2491 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7216 -1.2489 34 1 2.6275 -2.2367 3.0830 35 1 2.0397 -4.6500 1.7383 36 1 0.5871 -4.1355 2.6291 37 1 1.6892 -6.6528 3.2472 38 1 1.1722 -6.2179 4.9338 39 1 3.6496 -7.9872 3.4312 40 1 6.9900 -7.8598 7.5136 41 1 8.8715 -9.7485 6.5410 42 1 8.2391 -11.4861 8.0530 43 1 9.2140 -12.5702 5.5874 44 1 6.8493 -12.3967 5.0425 45 1 4.4543 -4.3932 4.1855 46 1 4.0031 -5.3672 2.7204 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15734574_15704118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:28:16 Heat of formation + Delta-G solvation = -76.692697 kcal Electronic energy + Delta-G solvation = -29571.351695 eV Core-core repulsion = 25119.385019 eV Total energy + Delta-G solvation = -4451.966676 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 360.135 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -48.90289 -41.83522 -40.87920 -39.77775 -38.45312 -37.91913 -36.15522 -35.23497 -34.58044 -31.45552 -29.25723 -28.37348 -28.31171 -27.10586 -26.63193 -25.05110 -23.78455 -22.85412 -21.49331 -20.91011 -20.62660 -19.46192 -19.32158 -18.59215 -17.88637 -17.63819 -17.43509 -17.12361 -16.97256 -16.47659 -16.14049 -15.93680 -15.74401 -15.65922 -15.48420 -15.41100 -15.15344 -14.66193 -14.55861 -14.44324 -14.09260 -13.96146 -13.58885 -13.37068 -13.12610 -13.07301 -12.94402 -12.92037 -12.88166 -12.72106 -12.49516 -12.48426 -12.37401 -12.36224 -11.79531 -11.47070 -11.41008 -11.17996 -11.12794 -10.71948 -10.33731 -10.29320 -10.22053 -8.76040 -5.03711 -0.10568 0.01991 0.64164 1.07549 1.23598 1.53118 1.69605 1.88190 1.94444 2.14932 2.90281 3.00740 3.14866 3.23792 3.42796 3.54131 3.56988 3.69475 3.72956 3.78526 3.93397 3.95915 4.21930 4.34452 4.46333 4.47367 4.56398 4.57534 4.60532 4.61019 4.71715 4.73929 4.75892 4.80757 4.84254 4.86739 4.88993 4.95600 5.04132 5.17754 5.23348 5.26458 5.32376 5.53062 5.79436 6.15128 6.26313 6.58705 6.99336 7.25014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.126 3.874 3 C -0.139 4.139 4 C -0.179 4.179 5 O -0.371 6.371 6 C 0.647 3.353 7 O -0.589 6.589 8 N -0.703 5.703 9 C 0.135 3.865 10 C 0.086 3.914 11 F -0.196 7.196 12 C -0.144 4.144 13 C 0.141 3.859 14 H 0.101 0.899 15 N -0.670 5.670 16 C 0.315 3.685 17 N -0.577 5.577 18 C 0.102 3.898 19 C -0.270 4.270 20 C -0.027 4.027 21 O -0.557 6.557 22 Si 0.718 3.282 23 S 0.118 5.882 24 C -0.159 4.159 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.415 0.585 35 H 0.107 0.893 36 H 0.081 0.919 37 H 0.137 0.863 38 H 0.095 0.905 39 H 0.429 0.571 40 H 0.179 0.821 41 H 0.107 0.893 42 H 0.397 0.603 43 H -0.257 1.257 44 H -0.282 1.282 45 H 0.080 0.920 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.899 -0.416 -3.801 4.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.090 3.910 3 C -0.196 4.196 4 C -0.236 4.236 5 O -0.285 6.285 6 C 0.400 3.600 7 O -0.480 6.480 8 N -0.363 5.363 9 C 0.012 3.988 10 C 0.067 3.933 11 F -0.177 7.177 12 C -0.183 4.183 13 C 0.033 3.967 14 H 0.119 0.881 15 N -0.310 5.310 16 C -0.056 4.056 17 N -0.303 5.303 18 C -0.049 4.049 19 C -0.393 4.393 20 C -0.139 4.139 21 O -0.368 6.368 22 Si 0.620 3.380 23 S 0.367 5.633 24 C -0.199 4.199 25 H 0.079 0.921 26 H 0.106 0.894 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.251 0.749 35 H 0.125 0.875 36 H 0.099 0.901 37 H 0.156 0.844 38 H 0.113 0.887 39 H 0.269 0.731 40 H 0.196 0.804 41 H 0.125 0.875 42 H 0.248 0.752 43 H -0.181 1.181 44 H -0.209 1.209 45 H 0.099 0.901 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 1.618 -1.197 -5.001 5.391 hybrid contribution 0.562 0.081 2.303 2.371 sum 2.180 -1.116 -2.698 3.644 Atomic orbital electron populations 1.22478 0.94017 1.03772 1.03493 1.22383 0.94491 0.92581 0.81531 1.21899 1.02480 0.90963 1.04215 1.22469 1.01676 1.02323 0.97156 1.86322 1.71526 1.23255 1.47414 1.18224 0.78661 0.80829 0.82263 1.90912 1.42030 1.70946 1.44130 1.44548 1.55534 1.12722 1.23541 1.21851 1.01092 0.79501 0.96371 1.21854 0.98788 0.89831 0.82827 1.92885 1.95767 1.73265 1.55753 1.24007 0.96810 0.92416 1.05067 1.22395 0.92510 0.82198 0.99559 0.88074 1.43963 1.33588 1.24268 1.29176 1.23944 0.94121 0.94464 0.93059 1.66466 1.16461 1.36166 1.11172 1.21460 0.92746 0.91011 0.99689 1.24629 1.08723 1.02969 1.02981 1.23945 0.96407 1.01467 0.92095 1.86572 1.51609 1.63714 1.34873 0.94462 0.79354 0.78827 0.85349 1.83858 1.30760 1.20483 1.28177 1.24221 0.94581 0.97866 1.03220 0.92145 0.89354 0.91627 0.91165 0.88212 0.91360 0.91529 0.89426 0.91877 0.74896 0.87507 0.90082 0.84446 0.88656 0.73080 0.80396 0.87526 0.75214 1.18131 1.20880 0.90131 0.85859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.54 8.37 71.98 0.60 0.06 16 2 C 0.13 0.34 1.13 -10.79 -0.01 0.33 16 3 C -0.14 0.27 8.85 71.98 0.64 0.91 16 4 C -0.18 -0.41 8.37 71.98 0.60 0.20 16 5 O -0.37 -2.09 9.94 -55.50 -0.55 -2.64 16 6 C 0.65 3.95 8.06 129.79 1.05 4.99 16 7 O -0.59 -6.09 11.88 19.80 0.24 -5.85 16 8 N -0.70 -0.34 5.47 -590.85 -3.23 -3.57 16 9 C 0.13 -0.48 5.37 86.38 0.46 -0.01 16 10 C 0.09 -0.41 1.67 -10.27 -0.02 -0.43 16 11 F -0.20 -0.27 16.80 44.97 0.76 0.48 16 12 C -0.14 1.12 7.29 31.12 0.23 1.35 16 13 C 0.14 -0.52 4.33 45.52 0.20 -0.32 16 14 H 0.10 0.20 7.66 -2.39 -0.02 0.18 16 15 N -0.67 2.59 5.52 -327.88 -1.81 0.79 16 16 C 0.31 0.74 8.09 179.32 1.45 2.19 16 17 N -0.58 -3.98 9.83 -202.02 -1.99 -5.96 16 18 C 0.10 0.57 11.24 83.54 0.94 1.51 16 19 C -0.27 -0.90 5.76 24.57 0.14 -0.75 16 20 C -0.03 0.01 2.98 71.24 0.21 0.22 16 21 O -0.56 -1.18 12.85 -148.98 -1.92 -3.09 16 22 Si 0.72 -1.17 31.07 68.60 2.13 0.96 16 23 S 0.12 0.09 20.59 -56.49 -1.16 -1.08 16 24 C -0.16 0.88 7.32 31.12 0.23 1.11 16 25 H 0.06 0.17 8.14 -2.39 -0.02 0.15 16 26 H 0.09 -0.05 8.14 -2.39 -0.02 -0.07 16 27 H 0.06 0.52 5.88 -2.39 -0.01 0.50 16 28 H 0.07 -0.15 8.14 -2.38 -0.02 -0.17 16 29 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 30 H 0.07 -0.12 8.14 -2.39 -0.02 -0.14 16 31 H 0.07 0.46 5.88 -2.38 -0.01 0.45 16 32 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 33 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 34 H 0.41 -0.59 8.30 -92.71 -0.77 -1.36 16 35 H 0.11 -0.64 7.95 -2.39 -0.02 -0.66 16 36 H 0.08 -0.18 8.14 -2.39 -0.02 -0.20 16 37 H 0.14 -1.81 8.08 -2.39 -0.02 -1.83 16 38 H 0.09 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.43 -4.11 8.85 -92.71 -0.82 -4.93 16 40 H 0.18 0.58 8.06 -2.92 -0.02 0.55 16 41 H 0.11 -0.54 7.96 -2.39 -0.02 -0.56 16 42 H 0.40 -2.56 8.74 -74.06 -0.65 -3.21 16 43 H -0.26 -0.22 7.11 99.48 0.71 0.49 16 44 H -0.28 -1.56 7.11 99.48 0.71 -0.86 16 45 H 0.08 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.12 -1.07 7.97 -2.39 -0.02 -1.09 16 Total: 0.00 -20.87 393.73 -1.98 -22.85 By element: Atomic # 1 Polarization: -13.07 SS G_CDS: -1.16 Total: -14.23 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 6.72 Total: 11.34 kcal Atomic # 7 Polarization: -1.72 SS G_CDS: -7.03 Total: -8.75 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -2.23 Total: -11.58 kcal Atomic # 9 Polarization: -0.27 SS G_CDS: 0.76 Total: 0.48 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: 2.13 Total: 0.96 kcal Atomic # 16 Polarization: 0.09 SS G_CDS: -1.16 Total: -1.08 kcal Total: -20.87 -1.98 -22.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15734574_15704118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.839 kcal (2) G-P(sol) polarization free energy of solvation -20.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds