Wall clock time and date at job start Thu Mar 4 2021 12:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33329 * 125.94929 * 2 1 4 4 C 1.50698 * 122.71203 * 359.96576 * 3 2 1 5 5 O 1.42902 * 109.47070 * 113.25150 * 4 3 2 6 6 Si 1.86298 * 109.47166 * 233.25186 * 4 3 2 7 7 N 1.32128 * 114.57979 * 179.69480 * 3 2 1 8 8 C 1.29685 * 116.86596 * 0.27162 * 7 3 2 9 9 N 1.38603 * 124.95241 * 180.02562 * 8 7 3 10 10 C 1.46502 * 120.00261 * 180.02562 * 9 8 7 11 11 H 1.08997 * 112.85080 * 23.79398 * 10 9 8 12 12 C 1.53780 * 113.61718 * 154.99869 * 10 9 8 13 13 C 1.53774 * 87.08203 * 139.97764 * 12 10 9 14 14 F 1.39901 * 113.61761 * 89.11786 * 13 12 10 15 15 C 1.53004 * 113.61390 * 219.93392 * 13 12 10 16 16 N 1.46497 * 109.47440 * 185.00125 * 15 13 12 17 17 C 1.34772 * 120.00429 * 180.02562 * 16 15 13 18 18 O 1.21517 * 119.99555 * 359.97438 * 17 16 15 19 19 O 1.34637 * 120.00396 * 179.97438 * 17 16 15 20 20 C 1.45195 * 116.99927 * 179.97438 * 19 17 16 21 21 C 1.52994 * 109.47340 * 60.00230 * 20 19 17 22 22 C 1.53008 * 109.46913 * 180.02562 * 20 19 17 23 23 C 1.53001 * 109.47522 * 299.99959 * 20 19 17 24 24 C 1.53778 * 87.08422 * 334.56311 * 13 12 10 25 25 S 1.70971 * 110.10020 * 359.97438 * 8 7 3 26 26 H 1.09001 * 109.46651 * 84.86079 * 1 2 3 27 27 H 1.09001 * 109.46679 * 204.85425 * 1 2 3 28 28 H 1.09000 * 109.47158 * 324.85963 * 1 2 3 29 29 H 1.08995 * 109.46958 * 353.25408 * 4 3 2 30 30 H 0.96701 * 114.00287 * 60.00304 * 5 4 3 31 31 H 1.48498 * 109.99992 * 58.67825 * 6 4 3 32 32 H 1.48500 * 110.00009 * 179.97438 * 6 4 3 33 33 H 0.96999 * 119.99612 * 359.97438 * 9 8 7 34 34 H 1.08998 * 113.60840 * 254.52793 * 12 10 9 35 35 H 1.08999 * 113.61138 * 25.42575 * 12 10 9 36 36 H 1.08998 * 109.46819 * 304.99748 * 15 13 12 37 37 H 1.09003 * 109.47044 * 64.99760 * 15 13 12 38 38 H 0.97008 * 119.99981 * 359.97438 * 16 15 13 39 39 H 1.09000 * 109.47319 * 59.99605 * 21 20 19 40 40 H 1.09001 * 109.47300 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47124 * 299.99484 * 21 20 19 42 42 H 1.08996 * 109.46822 * 59.99721 * 22 20 19 43 43 H 1.08996 * 109.46880 * 180.02562 * 22 20 19 44 44 H 1.09000 * 109.46915 * 299.99886 * 22 20 19 45 45 H 1.08996 * 109.46695 * 60.00082 * 23 20 19 46 46 H 1.08998 * 109.47442 * 180.02562 * 23 20 19 47 47 H 1.09005 * 109.46755 * 300.00196 * 23 20 19 48 48 H 1.08993 * 113.61948 * 270.88533 * 24 13 12 49 49 H 1.09001 * 113.61639 * 139.97704 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7414 2.4830 -0.0008 5 8 2.0628 3.1207 1.2370 6 14 2.4949 3.4433 -1.4081 7 7 3.5851 0.8189 0.0064 8 6 3.9316 -0.4308 0.0063 9 7 5.2384 -0.8925 0.0130 10 6 5.5066 -2.3327 0.0116 11 1 4.6829 -2.9162 -0.3997 12 6 6.8782 -2.7034 -0.5767 13 6 6.9898 -3.7479 0.5463 14 9 6.4534 -4.9948 0.2074 15 6 8.3911 -3.8490 1.1523 16 7 8.4255 -4.9456 2.1231 17 6 9.5653 -5.2225 2.7869 18 8 10.5646 -4.5628 2.5798 19 8 9.5967 -6.2300 3.6794 20 6 10.8582 -6.4716 4.3565 21 6 11.2671 -5.2198 5.1352 22 6 10.7007 -7.6462 5.3244 23 6 11.9364 -6.8042 3.3231 24 6 6.0283 -2.8634 1.3574 25 16 2.5414 -1.4260 -0.0018 26 1 -0.3633 0.0921 -1.0236 27 1 -0.3633 -0.9325 0.4320 28 1 -0.3633 0.8404 0.5915 29 1 0.6587 2.4500 -0.1220 30 1 3.0118 3.1852 1.4115 31 1 2.1947 2.7729 -2.6987 32 1 1.9617 4.8293 -1.4202 33 1 5.9755 -0.2619 0.0178 34 1 6.8220 -3.1391 -1.5742 35 1 7.6151 -1.9036 -0.5039 36 1 9.1160 -4.0411 0.3613 37 1 8.6389 -2.9128 1.6527 38 1 7.6277 -5.4720 2.2887 39 1 10.4990 -4.9828 5.8715 40 1 12.2138 -5.4013 5.6439 41 1 11.3794 -4.3834 4.4454 42 1 10.4097 -8.5379 4.7693 43 1 11.6476 -7.8272 5.8330 44 1 9.9326 -7.4097 6.0607 45 1 12.0486 -5.9677 2.6333 46 1 12.8833 -6.9860 3.8314 47 1 11.6451 -7.6961 2.7683 48 1 6.5328 -2.1074 1.9589 49 1 5.2859 -3.4283 1.9213 There are 67 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 67 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15734574_15704122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:28:20 Heat of formation + Delta-G solvation = -83.124479 kcal Electronic energy + Delta-G solvation = -31784.730954 eV Core-core repulsion = 27176.947756 eV Total energy + Delta-G solvation = -4607.783198 eV No. of doubly occupied orbitals = 67 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 374.151 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -48.92558 -41.83301 -41.10164 -40.04299 -38.47689 -37.56247 -36.18674 -35.34540 -34.69595 -32.83521 -29.49826 -28.68208 -28.37559 -28.31295 -27.12022 -25.84580 -24.78381 -23.87161 -22.83789 -21.57648 -21.03798 -20.24664 -19.43803 -19.08054 -17.98315 -17.84850 -17.59053 -17.43259 -17.07453 -16.98538 -16.54305 -16.34756 -15.90978 -15.74481 -15.58067 -15.46062 -15.33340 -15.11567 -14.76889 -14.46689 -14.25878 -14.19200 -14.14479 -14.00374 -13.58564 -13.54475 -13.37374 -13.12933 -13.07364 -12.98267 -12.93016 -12.88292 -12.68513 -12.50611 -12.45999 -12.36805 -11.98471 -11.73728 -11.51254 -11.41278 -11.16655 -11.04476 -10.70684 -10.46925 -10.33367 -10.05809 -8.67788 -4.93743 -0.07773 0.13121 0.69191 1.07400 1.24852 1.61521 1.69716 1.79626 1.87108 1.95753 2.88554 2.94751 3.13549 3.21622 3.39663 3.44720 3.53812 3.65217 3.72739 3.78287 3.93162 3.98160 4.07784 4.15481 4.28685 4.40816 4.43961 4.53479 4.56849 4.57698 4.60656 4.65156 4.73206 4.75741 4.79163 4.82985 4.85786 4.86541 4.86882 4.89184 4.99477 5.08892 5.17768 5.20703 5.26207 5.32212 5.53354 5.60236 6.26533 6.34367 6.63947 6.87216 7.25336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.266 4.266 3 C 0.060 3.940 4 C -0.037 4.037 5 O -0.549 6.549 6 Si 0.778 3.222 7 N -0.551 5.551 8 C 0.312 3.688 9 N -0.669 5.669 10 C 0.128 3.872 11 H 0.109 0.891 12 C -0.140 4.140 13 C 0.088 3.912 14 F -0.193 7.193 15 C 0.133 3.867 16 N -0.703 5.703 17 C 0.646 3.354 18 O -0.590 6.590 19 O -0.370 6.370 20 C 0.127 3.873 21 C -0.179 4.179 22 C -0.139 4.139 23 C -0.180 4.180 24 C -0.164 4.164 25 S 0.113 5.887 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.081 0.919 29 H 0.121 0.879 30 H 0.393 0.607 31 H -0.297 1.297 32 H -0.282 1.282 33 H 0.423 0.577 34 H 0.102 0.898 35 H 0.136 0.864 36 H 0.083 0.917 37 H 0.104 0.896 38 H 0.416 0.584 39 H 0.062 0.938 40 H 0.086 0.914 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.087 0.913 47 H 0.060 0.940 48 H 0.123 0.877 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.869 -2.575 0.612 3.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.389 4.389 3 C -0.071 4.071 4 C -0.150 4.150 5 O -0.356 6.356 6 Si 0.683 3.317 7 N -0.278 5.278 8 C -0.060 4.060 9 N -0.309 5.309 10 C 0.022 3.978 11 H 0.127 0.873 12 C -0.179 4.179 13 C 0.068 3.932 14 F -0.173 7.173 15 C 0.010 3.990 16 N -0.364 5.364 17 C 0.400 3.600 18 O -0.480 6.480 19 O -0.285 6.285 20 C 0.091 3.909 21 C -0.237 4.237 22 C -0.196 4.196 23 C -0.238 4.238 24 C -0.203 4.203 25 S 0.362 5.638 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.139 0.861 30 H 0.243 0.757 31 H -0.224 1.224 32 H -0.209 1.209 33 H 0.264 0.736 34 H 0.120 0.880 35 H 0.154 0.846 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.252 0.748 39 H 0.081 0.919 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.087 0.913 43 H 0.117 0.883 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.141 0.859 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.894 -2.715 -0.140 3.313 hybrid contribution -0.833 0.220 0.161 0.876 sum 1.061 -2.495 0.021 2.711 Atomic orbital electron populations 1.20257 0.86042 1.03797 1.03236 1.25451 1.02177 0.93776 1.17452 1.20212 0.87330 0.97444 1.02089 1.24816 1.03329 0.89831 0.96985 1.86438 1.31257 1.79677 1.38229 0.92978 0.90336 0.75544 0.72798 1.65968 1.16883 1.17090 1.27822 1.23542 0.92785 0.91483 0.98170 1.43880 1.01121 1.06765 1.79159 1.22623 0.98528 0.79411 0.97243 0.87310 1.23972 0.96640 0.98240 0.99035 1.21830 0.92479 0.80248 0.98625 1.92890 1.87348 1.43794 1.93264 1.21874 0.95437 0.90447 0.91258 1.44533 1.11662 1.37105 1.43053 1.18241 0.83878 0.79401 0.78531 1.90918 1.34322 1.53613 1.69183 1.86316 1.40403 1.49478 1.52296 1.22373 0.79666 0.97025 0.91867 1.22470 1.02958 0.97699 1.00540 1.21899 1.04370 0.95440 0.97858 1.22479 0.99079 1.02459 0.99733 1.24315 0.98986 0.99248 0.97754 1.83879 0.96301 1.09660 1.73920 0.90221 0.90464 0.90080 0.86128 0.75699 1.22408 1.20888 0.73637 0.87976 0.84570 0.89894 0.87810 0.74797 0.91927 0.89470 0.91530 0.91290 0.88261 0.91196 0.91604 0.89414 0.92073 0.85910 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 0.02 9.71 71.24 0.69 0.71 16 2 C -0.27 -0.94 6.57 24.57 0.16 -0.78 16 3 C 0.06 0.26 5.19 41.40 0.21 0.48 16 4 C -0.04 -0.11 2.83 71.24 0.20 0.09 16 5 O -0.55 -2.18 12.88 -148.98 -1.92 -4.10 16 6 Si 0.78 1.80 32.62 68.60 2.24 4.03 16 7 N -0.55 -1.81 9.77 -189.86 -1.85 -3.67 16 8 C 0.31 0.18 8.24 179.32 1.48 1.65 16 9 N -0.67 3.89 5.51 -327.89 -1.81 2.08 16 10 C 0.13 -1.04 4.21 45.52 0.19 -0.85 16 11 H 0.11 -0.70 7.06 -2.39 -0.02 -0.71 16 12 C -0.14 1.53 7.29 31.12 0.23 1.76 16 13 C 0.09 -0.69 1.74 -10.27 -0.02 -0.70 16 14 F -0.19 0.52 16.58 44.97 0.75 1.27 16 15 C 0.13 -0.71 5.43 86.38 0.47 -0.24 16 16 N -0.70 0.74 5.45 -590.85 -3.22 -2.48 16 17 C 0.65 3.28 8.06 129.79 1.05 4.33 16 18 O -0.59 -5.62 11.88 19.79 0.24 -5.38 16 19 O -0.37 -1.76 9.94 -55.47 -0.55 -2.31 16 20 C 0.13 0.27 1.13 -10.79 -0.01 0.25 16 21 C -0.18 -0.35 8.37 71.98 0.60 0.26 16 22 C -0.14 0.35 8.85 71.98 0.64 0.99 16 23 C -0.18 -0.42 8.37 71.98 0.60 0.18 16 24 C -0.16 1.47 7.33 31.12 0.23 1.69 16 25 S 0.11 0.08 21.69 -56.49 -1.23 -1.14 16 26 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 27 H 0.08 -0.15 8.14 -2.39 -0.02 -0.17 16 28 H 0.08 -0.06 7.18 -2.39 -0.02 -0.07 16 29 H 0.12 0.24 6.34 -2.39 -0.02 0.22 16 30 H 0.39 -0.72 8.70 -74.06 -0.64 -1.37 16 31 H -0.30 -2.44 7.11 99.48 0.71 -1.73 16 32 H -0.28 -2.00 7.11 99.48 0.71 -1.29 16 33 H 0.42 -3.69 8.85 -92.71 -0.82 -4.51 16 34 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 35 H 0.14 -2.03 8.08 -2.39 -0.02 -2.05 16 36 H 0.08 -0.34 8.14 -2.39 -0.02 -0.36 16 37 H 0.10 -0.73 7.85 -2.39 -0.02 -0.75 16 38 H 0.42 -1.36 8.14 -92.70 -0.75 -2.11 16 39 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 40 H 0.09 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.07 0.44 5.88 -2.39 -0.01 0.43 16 42 H 0.07 -0.17 8.14 -2.39 -0.02 -0.19 16 43 H 0.10 -0.58 8.14 -2.39 -0.02 -0.60 16 44 H 0.07 -0.19 8.14 -2.39 -0.02 -0.21 16 45 H 0.07 0.47 5.88 -2.39 -0.01 0.46 16 46 H 0.09 -0.09 8.14 -2.39 -0.02 -0.11 16 47 H 0.06 0.12 8.14 -2.38 -0.02 0.10 16 48 H 0.12 -1.31 7.90 -2.39 -0.02 -1.33 16 49 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 Total: 0.00 -18.46 413.40 -1.81 -20.28 By element: Atomic # 1 Polarization: -17.22 SS G_CDS: -1.17 Total: -18.40 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 6.72 Total: 9.82 kcal Atomic # 7 Polarization: 2.82 SS G_CDS: -6.88 Total: -4.07 kcal Atomic # 8 Polarization: -9.55 SS G_CDS: -2.23 Total: -11.79 kcal Atomic # 9 Polarization: 0.52 SS G_CDS: 0.75 Total: 1.27 kcal Atomic # 14 Polarization: 1.80 SS G_CDS: 2.24 Total: 4.03 kcal Atomic # 16 Polarization: 0.08 SS G_CDS: -1.23 Total: -1.14 kcal Total: -18.46 -1.81 -20.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15734574_15704122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.849 kcal (2) G-P(sol) polarization free energy of solvation -18.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds