Wall clock time and date at job start Thu Mar 4 2021 12:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42906 * 1 3 3 Si 1.86296 * 109.47032 * 2 1 4 4 H 1.48496 * 109.47405 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47219 * 299.99909 * 3 2 1 6 6 H 1.48505 * 109.47163 * 59.99618 * 3 2 1 7 7 C 1.50694 * 109.46792 * 119.99877 * 2 1 3 8 8 C 1.38023 * 120.33441 * 244.99953 * 7 2 1 9 9 N 1.31974 * 120.85666 * 180.02562 * 8 7 2 10 10 C 1.32398 * 121.62437 * 0.02562 * 9 8 7 11 11 N 1.38996 * 119.70888 * 179.97438 * 10 9 8 12 12 C 1.46498 * 120.00300 * 179.97438 * 11 10 9 13 13 C 1.52572 * 108.90606 * 277.83389 * 12 11 10 14 14 C 1.54362 * 109.19479 * 161.48329 * 13 12 11 15 15 Si 1.85201 * 107.06520 * 56.71146 * 14 13 12 16 16 C 1.87774 * 111.38043 * 81.20489 * 15 14 13 17 17 C 1.56390 * 98.96323 * 98.19789 * 16 15 14 18 18 C 1.53779 * 109.79001 * 39.37252 * 17 16 15 19 19 C 1.55696 * 111.38959 * 312.19180 * 18 17 16 20 20 C 1.85203 * 110.01728 * 317.20448 * 15 14 13 21 21 C 1.52560 * 108.90893 * 155.00107 * 12 11 10 22 22 C 1.39136 * 120.58424 * 359.97438 * 10 9 8 23 23 C 1.38294 * 119.10285 * 0.02562 * 22 10 9 24 24 H 0.96696 * 114.00022 * 300.00615 * 1 2 3 25 25 H 1.08994 * 109.47245 * 240.00236 * 2 1 3 26 26 H 1.08002 * 119.57370 * 0.02562 * 8 7 2 27 27 H 0.97005 * 120.00162 * 359.97438 * 11 10 9 28 28 H 1.09002 * 108.88082 * 36.37202 * 12 11 10 29 29 H 1.09002 * 109.51578 * 281.39673 * 13 12 11 30 30 H 1.08997 * 109.51727 * 41.56489 * 13 12 11 31 31 H 1.09000 * 109.93270 * 297.32090 * 14 13 12 32 32 H 1.08998 * 110.00308 * 176.14419 * 14 13 12 33 33 H 1.09005 * 111.49348 * 215.64264 * 16 15 14 34 34 H 1.08999 * 111.49381 * 340.76014 * 16 15 14 35 35 H 1.08995 * 109.42005 * 279.27196 * 17 16 15 36 36 H 1.09002 * 109.41602 * 159.46408 * 17 16 15 37 37 H 1.08999 * 109.10675 * 191.68620 * 18 17 16 38 38 H 1.09000 * 109.10782 * 72.70167 * 18 17 16 39 39 H 1.09001 * 111.13983 * 270.08228 * 19 18 17 40 40 H 1.09004 * 111.17820 * 145.89394 * 19 18 17 41 41 H 1.09004 * 109.93242 * 283.40397 * 20 15 14 42 42 H 1.09000 * 110.00623 * 162.22406 * 20 15 14 43 43 H 1.09002 * 109.51705 * 318.43140 * 21 12 11 44 44 H 1.08998 * 109.51975 * 78.53887 * 21 12 11 45 45 H 1.08004 * 120.45058 * 180.02562 * 22 10 9 46 46 H 1.08001 * 120.75312 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 3.5350 1.7565 0.0006 5 1 1.5550 2.4565 -1.2125 6 1 1.5549 2.4565 1.2125 7 6 1.9313 -0.7104 1.2305 8 6 2.6383 -0.0201 2.1941 9 7 3.0833 -0.6320 3.2754 10 6 2.8723 -1.9231 3.4789 11 7 3.3596 -2.5274 4.6319 12 6 3.1294 -3.9554 4.8639 13 6 1.7327 -4.1424 5.4488 14 6 1.2984 -5.6123 5.2660 15 14 2.5872 -6.6649 6.0791 16 6 2.3218 -6.7600 7.9356 17 6 1.5780 -8.1339 8.0054 18 6 2.2116 -9.1201 7.0099 19 6 2.4001 -8.4693 5.6081 20 6 4.2771 -6.0268 5.6706 21 6 4.2209 -4.4887 5.7867 22 6 2.1671 -2.6804 2.5488 23 6 1.6884 -2.0666 1.4058 24 1 -0.3933 0.4418 0.7650 25 1 1.7924 -0.5138 -0.8900 26 1 2.8298 1.0346 2.0616 27 1 3.8522 -2.0035 5.2831 28 1 3.1849 -4.4811 3.9106 29 1 1.7466 -3.8961 6.5106 30 1 1.0307 -3.4883 4.9316 31 1 1.2378 -5.8526 4.2045 32 1 0.3308 -5.7770 5.7398 33 1 3.2694 -6.7909 8.4734 34 1 1.6905 -5.9456 8.2910 35 1 0.5272 -7.9903 7.7541 36 1 1.6565 -8.5376 9.0148 37 1 1.5668 -9.9937 6.9138 38 1 3.1830 -9.4361 7.3900 39 1 1.5213 -8.6232 4.9818 40 1 3.2993 -8.8431 5.1181 41 1 4.5468 -6.3132 4.6540 42 1 5.0069 -6.4263 6.3749 43 1 5.1825 -4.0661 5.4955 44 1 3.9968 -4.2083 6.8159 45 1 1.9959 -3.7334 2.7172 46 1 1.1380 -2.6290 0.6661 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15739292_13915762.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:29:58 Heat of formation + Delta-G solvation = -37.029778 kcal Electronic energy + Delta-G solvation = -23153.959450 eV Core-core repulsion = 19973.210846 eV Total energy + Delta-G solvation = -3180.748603 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 306.163 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.47019 -39.02549 -37.62835 -36.14400 -34.59743 -33.31006 -32.09604 -31.19149 -29.67287 -27.27130 -25.61422 -24.91605 -24.58030 -23.43159 -22.57648 -21.50450 -20.82166 -18.69329 -18.50990 -17.61341 -16.66032 -16.32063 -16.24061 -15.95208 -15.84448 -15.61530 -15.52029 -15.17527 -14.85116 -14.68517 -14.18116 -14.01870 -13.69419 -13.49215 -13.36523 -13.21239 -12.97920 -12.77102 -12.47455 -12.32708 -12.19773 -12.16030 -12.11197 -11.96971 -11.91474 -11.74287 -11.35554 -11.12019 -10.74123 -10.40623 -10.34189 -10.29708 -10.22405 -10.17164 -8.67969 0.22200 0.41959 1.21857 1.46797 1.53788 1.79926 1.93410 1.94495 1.95661 2.14355 2.69262 2.83710 3.55535 3.61254 3.74538 3.81904 3.99734 4.03826 4.10879 4.13819 4.15347 4.18307 4.34077 4.40014 4.41282 4.52773 4.62290 4.65917 4.67777 4.69830 4.78202 4.80090 4.86999 5.02473 5.10756 5.13560 5.18579 5.21595 5.23111 5.27302 5.32108 5.37192 5.44616 5.48772 5.54650 5.56812 5.60282 6.06238 6.56695 6.73486 7.15329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.059 4.059 3 Si 0.973 3.027 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.237 4.237 8 C 0.132 3.868 9 N -0.569 5.569 10 C 0.395 3.605 11 N -0.718 5.718 12 C 0.144 3.856 13 C -0.123 4.123 14 C -0.414 4.414 15 Si 1.057 2.943 16 C -0.420 4.420 17 C -0.127 4.127 18 C -0.124 4.124 19 C -0.423 4.423 20 C -0.412 4.412 21 C -0.116 4.116 22 C -0.243 4.243 23 C -0.008 4.008 24 H 0.387 0.613 25 H 0.125 0.875 26 H 0.154 0.846 27 H 0.405 0.595 28 H 0.086 0.914 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.088 0.912 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.150 0.850 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.145 -2.652 0.763 2.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.360 6.360 2 C -0.171 4.171 3 Si 0.798 3.202 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.243 4.243 8 C -0.025 4.025 9 N -0.287 5.287 10 C 0.159 3.841 11 N -0.349 5.349 12 C 0.040 3.960 13 C -0.162 4.162 14 C -0.500 4.500 15 Si 1.247 2.753 16 C -0.505 4.505 17 C -0.165 4.165 18 C -0.162 4.162 19 C -0.508 4.508 20 C -0.498 4.498 21 C -0.153 4.153 22 C -0.267 4.267 23 C -0.034 4.034 24 H 0.236 0.764 25 H 0.143 0.857 26 H 0.171 0.829 27 H 0.241 0.759 28 H 0.104 0.896 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.168 0.832 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 0.975 -1.841 0.843 2.247 hybrid contribution -0.503 -0.434 0.404 0.778 sum 0.472 -2.274 1.247 2.637 Atomic orbital electron populations 1.86474 1.17637 1.81865 1.50010 1.24696 0.84642 1.09985 0.97737 0.85359 0.79565 0.75202 0.80064 1.18454 1.19622 1.17786 1.21042 1.06772 0.96414 1.00064 1.22439 0.92325 0.99483 0.88240 1.67135 1.27000 1.10064 1.24498 1.18666 0.89583 0.88282 0.87590 1.44825 1.59998 1.09880 1.20225 1.21249 0.95050 0.79320 1.00413 1.21811 0.95518 0.97011 1.01849 1.26285 1.12157 1.03143 1.08458 0.78788 0.65701 0.64908 0.65914 1.26850 1.03525 0.98568 1.21533 1.22070 0.99959 0.95127 0.99349 1.21890 1.00990 0.98772 0.94551 1.26692 1.04731 1.21008 0.98344 1.26245 1.18556 0.98536 1.06469 1.21553 0.97899 0.96031 0.99862 1.21722 1.06249 1.02147 0.96600 1.21436 0.92912 0.93398 0.95618 0.76416 0.85712 0.82904 0.75924 0.89561 0.90854 0.92523 0.89564 0.89883 0.90355 0.90296 0.91660 0.92356 0.92543 0.92072 0.90380 0.90040 0.89687 0.89298 0.91200 0.90087 0.83242 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.20 12.84 -148.98 -1.91 -2.11 16 2 C -0.06 0.05 2.82 71.23 0.20 0.25 16 3 Si 0.97 -0.42 25.16 68.60 1.73 1.30 16 4 H -0.26 -0.33 7.11 99.48 0.71 0.37 16 5 H -0.27 -0.70 7.11 99.48 0.71 0.00 16 6 H -0.25 0.02 7.04 99.48 0.70 0.72 16 7 C -0.24 -0.48 5.36 -19.76 -0.11 -0.59 16 8 C 0.13 0.64 9.84 84.62 0.83 1.48 16 9 N -0.57 -4.44 10.39 -193.27 -2.01 -6.45 16 10 C 0.40 1.85 7.45 133.07 0.99 2.84 16 11 N -0.72 -0.35 5.20 -325.92 -1.70 -2.05 16 12 C 0.14 -0.53 1.72 44.70 0.08 -0.46 16 13 C -0.12 0.46 4.95 30.91 0.15 0.62 16 14 C -0.41 2.47 4.96 72.44 0.36 2.82 16 15 Si 1.06 -7.66 10.57 68.60 0.72 -6.94 16 16 C -0.42 1.62 5.95 73.16 0.43 2.06 16 17 C -0.13 0.22 5.97 32.04 0.19 0.41 16 18 C -0.12 0.20 6.10 31.79 0.19 0.39 16 19 C -0.42 1.69 5.84 72.91 0.43 2.11 16 20 C -0.41 2.78 4.95 72.44 0.36 3.13 16 21 C -0.12 0.63 5.11 30.91 0.16 0.79 16 22 C -0.24 -0.45 8.65 22.50 0.19 -0.26 16 23 C -0.01 -0.01 9.84 22.44 0.22 0.21 16 24 H 0.39 -2.08 8.70 -74.06 -0.64 -2.72 16 25 H 0.13 -0.36 7.96 -2.39 -0.02 -0.38 16 26 H 0.15 0.33 4.87 -2.91 -0.01 0.31 16 27 H 0.40 -0.06 8.70 -92.70 -0.81 -0.86 16 28 H 0.09 -0.37 6.19 -2.39 -0.01 -0.39 16 29 H 0.07 -0.32 7.76 -2.39 -0.02 -0.34 16 30 H 0.06 -0.02 7.44 -2.39 -0.02 -0.04 16 31 H 0.09 -0.60 7.97 -2.39 -0.02 -0.62 16 32 H 0.08 -0.45 7.97 -2.39 -0.02 -0.47 16 33 H 0.08 -0.29 8.04 -2.38 -0.02 -0.31 16 34 H 0.08 -0.31 8.04 -2.39 -0.02 -0.33 16 35 H 0.06 -0.15 8.14 -2.39 -0.02 -0.17 16 36 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 37 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 38 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 39 H 0.08 -0.31 8.03 -2.39 -0.02 -0.33 16 40 H 0.08 -0.36 8.03 -2.38 -0.02 -0.38 16 41 H 0.08 -0.60 7.97 -2.39 -0.02 -0.62 16 42 H 0.09 -0.61 7.97 -2.39 -0.02 -0.63 16 43 H 0.07 -0.28 8.13 -2.39 -0.02 -0.30 16 44 H 0.08 -0.55 7.76 -2.39 -0.02 -0.57 16 45 H 0.15 -0.30 6.09 -2.91 -0.02 -0.32 16 46 H 0.15 -0.34 8.06 -2.91 -0.02 -0.36 16 Total: 0.00 -11.20 353.17 1.79 -9.41 By element: Atomic # 1 Polarization: -9.25 SS G_CDS: 0.27 Total: -8.98 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: 4.69 Total: 15.81 kcal Atomic # 7 Polarization: -4.80 SS G_CDS: -3.70 Total: -8.50 kcal Atomic # 8 Polarization: -0.20 SS G_CDS: -1.91 Total: -2.11 kcal Atomic # 14 Polarization: -8.08 SS G_CDS: 2.45 Total: -5.63 kcal Total: -11.20 1.79 -9.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739292_13915762.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.618 kcal (2) G-P(sol) polarization free energy of solvation -11.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds