Wall clock time and date at job start Thu Mar 4 2021 12:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86302 * 109.47135 * 2 1 4 4 H 1.48502 * 109.46888 * 300.00598 * 3 2 1 5 5 H 1.48496 * 109.47095 * 60.00334 * 3 2 1 6 6 H 1.48499 * 109.46929 * 180.02562 * 3 2 1 7 7 C 1.50699 * 109.46552 * 240.00259 * 2 1 3 8 8 C 1.33332 * 125.95188 * 299.99408 * 7 2 1 9 9 N 1.32124 * 114.57899 * 180.02562 * 8 7 2 10 10 C 1.29685 * 116.86386 * 0.02562 * 9 8 7 11 11 N 1.38620 * 124.94853 * 179.97438 * 10 9 8 12 12 C 1.46498 * 119.99673 * 0.30417 * 11 10 9 13 13 C 1.52567 * 108.90347 * 277.55321 * 12 11 10 14 14 C 1.54363 * 109.19528 * 161.48426 * 13 12 11 15 15 Si 1.85210 * 107.06223 * 56.71671 * 14 13 12 16 16 C 1.87761 * 111.38453 * 81.20026 * 15 14 13 17 17 C 1.56396 * 98.96210 * 98.20043 * 16 15 14 18 18 C 1.53768 * 109.79008 * 39.36811 * 17 16 15 19 19 C 1.55688 * 111.39726 * 312.19805 * 18 17 16 20 20 C 1.85207 * 110.01409 * 317.19812 * 15 14 13 21 21 C 1.52571 * 108.90701 * 154.72271 * 12 11 10 22 22 S 1.70968 * 110.10419 * 0.24267 * 10 9 8 23 23 H 0.96695 * 114.00497 * 59.99580 * 1 2 3 24 24 H 1.08999 * 109.47299 * 120.00389 * 2 1 3 25 25 H 1.07996 * 122.71223 * 0.03203 * 8 7 2 26 26 H 0.97001 * 119.99882 * 180.02562 * 11 10 9 27 27 H 1.08998 * 108.88885 * 36.08945 * 12 11 10 28 28 H 1.09005 * 109.51616 * 281.39754 * 13 12 11 29 29 H 1.08994 * 109.51891 * 41.57255 * 13 12 11 30 30 H 1.08993 * 109.94082 * 297.32471 * 14 13 12 31 31 H 1.09001 * 110.00321 * 176.13584 * 14 13 12 32 32 H 1.09000 * 111.49826 * 215.63852 * 16 15 14 33 33 H 1.09007 * 111.49556 * 340.76623 * 16 15 14 34 34 H 1.09004 * 109.41863 * 279.26967 * 17 16 15 35 35 H 1.09004 * 109.41949 * 159.46720 * 17 16 15 36 36 H 1.09005 * 109.10966 * 191.68293 * 18 17 16 37 37 H 1.09001 * 109.10135 * 72.70504 * 18 17 16 38 38 H 1.08999 * 111.14150 * 270.08171 * 19 18 17 39 39 H 1.08996 * 111.18368 * 145.88853 * 19 18 17 40 40 H 1.08996 * 109.93472 * 283.40715 * 20 15 14 41 41 H 1.09000 * 110.00535 * 162.22559 * 20 15 14 42 42 H 1.09002 * 109.51267 * 318.42837 * 21 12 11 43 43 H 1.08998 * 109.51186 * 78.59131 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5549 2.4565 -1.2125 5 1 1.5551 2.4565 1.2125 6 1 3.5350 1.7564 -0.0006 7 6 1.9312 -0.7104 -1.2305 8 6 1.6833 -1.9788 -1.5581 9 7 2.2382 -2.3724 -2.6907 10 6 2.9435 -1.4945 -3.3339 11 7 3.5977 -1.7262 -4.5339 12 6 3.5145 -3.0427 -5.1712 13 6 4.5419 -3.9690 -4.5279 14 6 4.1673 -5.4345 -4.8361 15 14 4.0778 -5.5964 -6.6789 16 6 5.7842 -5.8169 -7.4305 17 6 5.7814 -7.3728 -7.5891 18 6 4.3921 -7.8469 -8.0468 19 6 3.2620 -7.2046 -7.1899 20 6 3.2056 -4.1314 -7.4024 21 6 3.7385 -2.8806 -6.6716 22 16 2.9551 -0.0120 -2.4825 23 1 -0.3934 0.4417 -0.7649 24 1 1.7924 -0.5139 0.8899 25 1 1.0779 -2.6318 -0.9470 26 1 4.1071 -1.0154 -4.9536 27 1 2.5183 -3.4528 -5.0051 28 1 5.5307 -3.7531 -4.9326 29 1 4.5472 -3.8138 -3.4490 30 1 3.1993 -5.6714 -4.3947 31 1 4.9300 -6.1054 -4.4407 32 1 5.8631 -5.3171 -8.3959 33 1 6.5671 -5.4864 -6.7477 34 1 6.0252 -7.8350 -6.6325 35 1 6.5258 -7.6628 -8.3307 36 1 4.3370 -8.9317 -7.9546 37 1 4.2476 -7.5719 -9.0916 38 1 3.0288 -7.8206 -6.3214 39 1 2.3702 -7.0202 -7.7888 40 1 2.1310 -4.2239 -7.2455 41 1 3.4205 -4.0586 -8.4685 42 1 3.2066 -1.9976 -7.0259 43 1 4.8044 -2.7690 -6.8706 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_15739292_15704118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:30:11 Heat of formation + Delta-G solvation = -38.574919 kcal Electronic energy + Delta-G solvation = -21638.707312 eV Core-core repulsion = 18547.043953 eV Total energy + Delta-G solvation = -3091.663359 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 312.119 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.77208 -38.90338 -37.65751 -36.22271 -34.47197 -32.18990 -31.16283 -29.77880 -27.53005 -26.11896 -24.87283 -24.16051 -23.62234 -22.01973 -21.01435 -20.58068 -19.58001 -18.21085 -17.07874 -16.61816 -16.32865 -16.20018 -15.99052 -15.95522 -15.64046 -15.41427 -15.15150 -14.96278 -14.29857 -14.27760 -13.81659 -13.47718 -13.33239 -13.18656 -12.91678 -12.78770 -12.57537 -12.34141 -12.31938 -12.30032 -12.20442 -12.01977 -11.89031 -11.85394 -11.42126 -11.16374 -10.68520 -10.41893 -10.35278 -10.30745 -10.17416 -10.11156 -8.69348 0.01996 0.05478 0.71152 1.15614 1.40530 1.49345 1.65823 1.75601 1.81642 1.90390 2.09313 2.17224 2.56734 3.46496 3.64618 3.70481 3.97856 3.98383 4.06083 4.08839 4.13101 4.26019 4.35129 4.38927 4.56894 4.58465 4.59833 4.62424 4.69828 4.76639 4.81436 4.99447 5.02950 5.06542 5.11100 5.13632 5.15788 5.24613 5.28678 5.32184 5.40346 5.46490 5.48807 5.89432 6.10324 6.52485 7.06581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.022 4.022 3 Si 0.900 3.100 4 H -0.238 1.238 5 H -0.231 1.231 6 H -0.237 1.237 7 C -0.309 4.309 8 C 0.123 3.877 9 N -0.549 5.549 10 C 0.333 3.667 11 N -0.691 5.691 12 C 0.149 3.851 13 C -0.116 4.116 14 C -0.404 4.404 15 Si 0.990 3.010 16 C -0.404 4.404 17 C -0.122 4.122 18 C -0.119 4.119 19 C -0.408 4.408 20 C -0.405 4.405 21 C -0.118 4.118 22 S 0.065 5.935 23 H 0.377 0.623 24 H 0.124 0.876 25 H 0.177 0.823 26 H 0.412 0.588 27 H 0.092 0.908 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.077 0.923 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.072 0.928 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.415 1.001 -2.184 2.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.161 1.161 5 H -0.154 1.154 6 H -0.160 1.160 7 C -0.431 4.431 8 C -0.028 4.028 9 N -0.274 5.274 10 C -0.038 4.038 11 N -0.329 5.329 12 C 0.043 3.957 13 C -0.155 4.155 14 C -0.491 4.491 15 Si 1.185 2.815 16 C -0.491 4.491 17 C -0.159 4.159 18 C -0.156 4.156 19 C -0.494 4.494 20 C -0.492 4.492 21 C -0.156 4.156 22 S 0.314 5.686 23 H 0.224 0.776 24 H 0.142 0.858 25 H 0.194 0.806 26 H 0.250 0.750 27 H 0.110 0.890 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.099 0.901 41 H 0.103 0.897 42 H 0.091 0.909 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.178 1.856 -2.066 3.530 hybrid contribution -0.394 -0.605 -0.283 0.776 sum 1.784 1.251 -2.349 3.204 Atomic orbital electron populations 1.86521 1.17011 1.81563 1.48992 1.24037 0.84647 1.09342 0.95548 0.86250 0.81916 0.76181 0.83571 1.16128 1.15383 1.16007 1.25546 1.13393 0.99419 1.04783 1.21352 0.96896 0.92874 0.91697 1.66517 1.17128 1.33356 1.10375 1.23650 0.94837 0.92975 0.92334 1.44301 1.54324 1.14851 1.19450 1.21179 1.01410 0.81825 0.91318 1.21698 0.98190 0.93801 1.01829 1.26142 1.04985 0.98123 1.19876 0.79778 0.67845 0.66720 0.67173 1.26658 1.17198 0.98371 1.06846 1.22022 0.97149 0.95083 1.01665 1.21839 0.93305 1.00742 0.99732 1.26498 1.02375 1.16282 1.04280 1.26138 1.07473 1.10195 1.05347 1.21591 1.02040 0.99285 0.92671 1.84089 1.51842 1.14699 1.17971 0.77580 0.85839 0.80562 0.75045 0.88978 0.91749 0.91072 0.89977 0.90173 0.90375 0.90390 0.91840 0.91697 0.91943 0.92033 0.90380 0.90309 0.90068 0.89726 0.90910 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.20 12.87 -35.23 -0.45 -0.66 16 2 C -0.02 0.00 2.99 36.00 0.11 0.11 16 3 Si 0.90 -0.09 26.34 -169.99 -4.48 -4.57 16 4 H -0.24 -0.06 7.11 56.52 0.40 0.34 16 5 H -0.23 -0.18 7.11 56.52 0.40 0.23 16 6 H -0.24 -0.14 7.11 56.52 0.40 0.26 16 7 C -0.31 -0.35 5.74 -36.02 -0.21 -0.55 16 8 C 0.12 0.25 11.22 -19.14 -0.21 0.04 16 9 N -0.55 -1.70 9.91 -15.20 -0.15 -1.85 16 10 C 0.33 0.56 7.84 -87.67 -0.69 -0.13 16 11 N -0.69 0.29 5.19 -56.22 -0.29 -0.01 16 12 C 0.15 -0.10 2.09 -68.37 -0.14 -0.25 16 13 C -0.12 0.05 5.24 -26.24 -0.14 -0.09 16 14 C -0.40 0.41 4.96 37.87 0.19 0.60 16 15 Si 0.99 -2.38 10.56 -169.99 -1.80 -4.18 16 16 C -0.40 0.57 5.95 38.98 0.23 0.80 16 17 C -0.12 0.07 5.97 -24.51 -0.15 -0.08 16 18 C -0.12 0.05 6.10 -24.90 -0.15 -0.10 16 19 C -0.41 0.40 5.84 38.59 0.23 0.63 16 20 C -0.40 0.91 4.95 37.87 0.19 1.09 16 21 C -0.12 0.26 5.11 -26.24 -0.13 0.13 16 22 S 0.06 0.06 20.57 -107.50 -2.21 -2.15 16 23 H 0.38 -0.95 8.70 45.56 0.40 -0.55 16 24 H 0.12 -0.14 7.96 -51.93 -0.41 -0.55 16 25 H 0.18 0.13 8.06 -52.49 -0.42 -0.29 16 26 H 0.41 -1.05 8.70 -40.82 -0.36 -1.41 16 27 H 0.09 0.08 7.46 -51.93 -0.39 -0.31 16 28 H 0.06 -0.09 7.76 -51.93 -0.40 -0.50 16 29 H 0.07 0.12 7.92 -51.93 -0.41 -0.29 16 30 H 0.08 -0.03 7.97 -51.93 -0.41 -0.44 16 31 H 0.08 -0.08 7.97 -51.93 -0.41 -0.49 16 32 H 0.08 -0.12 8.04 -51.93 -0.42 -0.53 16 33 H 0.08 -0.12 8.04 -51.93 -0.42 -0.53 16 34 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 35 H 0.06 -0.03 8.14 -51.93 -0.42 -0.45 16 36 H 0.06 -0.01 8.14 -51.93 -0.42 -0.43 16 37 H 0.06 -0.04 8.14 -51.93 -0.42 -0.46 16 38 H 0.08 -0.06 8.03 -51.93 -0.42 -0.48 16 39 H 0.08 -0.09 8.03 -51.93 -0.42 -0.51 16 40 H 0.08 -0.16 7.97 -51.93 -0.41 -0.57 16 41 H 0.08 -0.21 7.97 -51.93 -0.41 -0.63 16 42 H 0.07 -0.15 8.13 -51.93 -0.42 -0.58 16 43 H 0.07 -0.23 7.76 -51.93 -0.40 -0.63 16 LS Contribution 349.80 15.07 5.27 5.27 Total: 0.00 -4.60 349.80 -11.62 -16.22 By element: Atomic # 1 Polarization: -3.65 SS G_CDS: -6.63 Total: -10.29 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -0.88 Total: 2.20 kcal Atomic # 7 Polarization: -1.41 SS G_CDS: -0.44 Total: -1.85 kcal Atomic # 8 Polarization: -0.20 SS G_CDS: -0.45 Total: -0.66 kcal Atomic # 14 Polarization: -2.47 SS G_CDS: -6.27 Total: -8.74 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.21 Total: -2.15 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -4.60 -11.62 -16.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739292_15704118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.354 kcal (2) G-P(sol) polarization free energy of solvation -4.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds