Wall clock time and date at job start Thu Mar 4 2021 12:30:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86302 * 109.47135 * 2 1 4 4 H 1.48502 * 109.46888 * 300.00598 * 3 2 1 5 5 H 1.48496 * 109.47095 * 60.00334 * 3 2 1 6 6 H 1.48499 * 109.46929 * 180.02562 * 3 2 1 7 7 C 1.50699 * 109.46552 * 240.00259 * 2 1 3 8 8 C 1.33332 * 125.95188 * 299.99408 * 7 2 1 9 9 N 1.32124 * 114.57899 * 180.02562 * 8 7 2 10 10 C 1.29685 * 116.86386 * 0.02562 * 9 8 7 11 11 N 1.38620 * 124.94853 * 179.97438 * 10 9 8 12 12 C 1.46498 * 119.99673 * 0.30417 * 11 10 9 13 13 C 1.52567 * 108.90347 * 277.55321 * 12 11 10 14 14 C 1.54363 * 109.19528 * 161.48426 * 13 12 11 15 15 Si 1.85210 * 107.06223 * 56.71671 * 14 13 12 16 16 C 1.87761 * 111.38453 * 81.20026 * 15 14 13 17 17 C 1.56396 * 98.96210 * 98.20043 * 16 15 14 18 18 C 1.53768 * 109.79008 * 39.36811 * 17 16 15 19 19 C 1.55688 * 111.39726 * 312.19805 * 18 17 16 20 20 C 1.85207 * 110.01409 * 317.19812 * 15 14 13 21 21 C 1.52571 * 108.90701 * 154.72271 * 12 11 10 22 22 S 1.70968 * 110.10419 * 0.24267 * 10 9 8 23 23 H 0.96695 * 114.00497 * 59.99580 * 1 2 3 24 24 H 1.08999 * 109.47299 * 120.00389 * 2 1 3 25 25 H 1.07996 * 122.71223 * 0.03203 * 8 7 2 26 26 H 0.97001 * 119.99882 * 180.02562 * 11 10 9 27 27 H 1.08998 * 108.88885 * 36.08945 * 12 11 10 28 28 H 1.09005 * 109.51616 * 281.39754 * 13 12 11 29 29 H 1.08994 * 109.51891 * 41.57255 * 13 12 11 30 30 H 1.08993 * 109.94082 * 297.32471 * 14 13 12 31 31 H 1.09001 * 110.00321 * 176.13584 * 14 13 12 32 32 H 1.09000 * 111.49826 * 215.63852 * 16 15 14 33 33 H 1.09007 * 111.49556 * 340.76623 * 16 15 14 34 34 H 1.09004 * 109.41863 * 279.26967 * 17 16 15 35 35 H 1.09004 * 109.41949 * 159.46720 * 17 16 15 36 36 H 1.09005 * 109.10966 * 191.68293 * 18 17 16 37 37 H 1.09001 * 109.10135 * 72.70504 * 18 17 16 38 38 H 1.08999 * 111.14150 * 270.08171 * 19 18 17 39 39 H 1.08996 * 111.18368 * 145.88853 * 19 18 17 40 40 H 1.08996 * 109.93472 * 283.40715 * 20 15 14 41 41 H 1.09000 * 110.00535 * 162.22559 * 20 15 14 42 42 H 1.09002 * 109.51267 * 318.42837 * 21 12 11 43 43 H 1.08998 * 109.51186 * 78.59131 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5549 2.4565 -1.2125 5 1 1.5551 2.4565 1.2125 6 1 3.5350 1.7564 -0.0006 7 6 1.9312 -0.7104 -1.2305 8 6 1.6833 -1.9788 -1.5581 9 7 2.2382 -2.3724 -2.6907 10 6 2.9435 -1.4945 -3.3339 11 7 3.5977 -1.7262 -4.5339 12 6 3.5145 -3.0427 -5.1712 13 6 4.5419 -3.9690 -4.5279 14 6 4.1673 -5.4345 -4.8361 15 14 4.0778 -5.5964 -6.6789 16 6 5.7842 -5.8169 -7.4305 17 6 5.7814 -7.3728 -7.5891 18 6 4.3921 -7.8469 -8.0468 19 6 3.2620 -7.2046 -7.1899 20 6 3.2056 -4.1314 -7.4024 21 6 3.7385 -2.8806 -6.6716 22 16 2.9551 -0.0120 -2.4825 23 1 -0.3934 0.4417 -0.7649 24 1 1.7924 -0.5139 0.8899 25 1 1.0779 -2.6318 -0.9470 26 1 4.1071 -1.0154 -4.9536 27 1 2.5183 -3.4528 -5.0051 28 1 5.5307 -3.7531 -4.9326 29 1 4.5472 -3.8138 -3.4490 30 1 3.1993 -5.6714 -4.3947 31 1 4.9300 -6.1054 -4.4407 32 1 5.8631 -5.3171 -8.3959 33 1 6.5671 -5.4864 -6.7477 34 1 6.0252 -7.8350 -6.6325 35 1 6.5258 -7.6628 -8.3307 36 1 4.3370 -8.9317 -7.9546 37 1 4.2476 -7.5719 -9.0916 38 1 3.0288 -7.8206 -6.3214 39 1 2.3702 -7.0202 -7.7888 40 1 2.1310 -4.2239 -7.2455 41 1 3.4205 -4.0586 -8.4685 42 1 3.2066 -1.9976 -7.0259 43 1 4.8044 -2.7690 -6.8706 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15739292_15704118.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:30:11 Heat of formation + Delta-G solvation = -30.505333 kcal Electronic energy + Delta-G solvation = -21638.357388 eV Core-core repulsion = 18547.043953 eV Total energy + Delta-G solvation = -3091.313436 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 312.119 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.84254 -38.87761 -37.66095 -36.14891 -34.44699 -32.07959 -31.20682 -29.68070 -27.50575 -26.13485 -24.80942 -24.18137 -23.50623 -21.96797 -20.96600 -20.61581 -19.60336 -18.24022 -17.07750 -16.63090 -16.33386 -16.14378 -15.99443 -15.88584 -15.58802 -15.40561 -15.20151 -14.91546 -14.33146 -14.18820 -13.73395 -13.37777 -13.24499 -13.09891 -12.85782 -12.79760 -12.49828 -12.38558 -12.35352 -12.20156 -12.11626 -11.94984 -11.89563 -11.75165 -11.35651 -11.17626 -10.73069 -10.33053 -10.30580 -10.20398 -10.19064 -10.16267 -8.73359 -0.06076 -0.00973 0.64042 1.14773 1.39797 1.47975 1.79994 1.88104 1.92415 1.96543 1.98447 2.20372 2.68059 3.51987 3.67159 3.75956 3.96422 4.06690 4.13837 4.15285 4.23426 4.33934 4.41326 4.52172 4.61770 4.65494 4.66714 4.70285 4.71513 4.80364 4.86457 5.08939 5.11122 5.13211 5.16721 5.21136 5.24199 5.29613 5.36608 5.45079 5.46688 5.54528 5.58173 5.86977 6.18300 6.66515 7.02052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.019 4.019 3 Si 0.926 3.074 4 H -0.242 1.242 5 H -0.243 1.243 6 H -0.246 1.246 7 C -0.308 4.308 8 C 0.108 3.892 9 N -0.574 5.574 10 C 0.324 3.676 11 N -0.684 5.684 12 C 0.151 3.849 13 C -0.114 4.114 14 C -0.417 4.417 15 Si 1.053 2.947 16 C -0.411 4.411 17 C -0.128 4.128 18 C -0.123 4.123 19 C -0.425 4.425 20 C -0.409 4.409 21 C -0.115 4.115 22 S 0.075 5.925 23 H 0.388 0.612 24 H 0.133 0.867 25 H 0.183 0.817 26 H 0.423 0.577 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.045 0.955 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.064 0.936 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.094 0.906 42 H 0.076 0.924 43 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.790 1.729 -2.934 3.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.133 4.133 3 Si 0.748 3.252 4 H -0.165 1.165 5 H -0.166 1.166 6 H -0.170 1.170 7 C -0.431 4.431 8 C -0.042 4.042 9 N -0.301 5.301 10 C -0.047 4.047 11 N -0.323 5.323 12 C 0.045 3.955 13 C -0.153 4.153 14 C -0.502 4.502 15 Si 1.244 2.756 16 C -0.497 4.497 17 C -0.165 4.165 18 C -0.161 4.161 19 C -0.510 4.510 20 C -0.496 4.496 21 C -0.153 4.153 22 S 0.324 5.676 23 H 0.237 0.763 24 H 0.151 0.849 25 H 0.199 0.801 26 H 0.262 0.738 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.097 0.903 41 H 0.113 0.887 42 H 0.095 0.905 43 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 2.556 2.578 -2.823 4.599 hybrid contribution -0.519 -0.862 -0.030 1.007 sum 2.037 1.716 -2.853 3.903 Atomic orbital electron populations 1.86492 1.17195 1.81868 1.49866 1.24101 0.84504 1.09310 0.95391 0.85885 0.80946 0.75688 0.82661 1.16542 1.16609 1.16982 1.25709 1.13076 0.99224 1.05082 1.21503 0.97416 0.93473 0.91838 1.66514 1.18102 1.34330 1.11113 1.23852 0.94828 0.93176 0.92855 1.44380 1.53849 1.15342 1.18768 1.21176 1.00355 0.81559 0.92444 1.21676 0.99077 0.94231 1.00335 1.26345 1.04312 0.97776 1.21782 0.78835 0.66528 0.65359 0.64893 1.26762 1.17974 0.97573 1.07399 1.22073 0.96911 0.95968 1.01576 1.21884 0.93683 1.00467 1.00051 1.26698 1.02553 1.17576 1.04173 1.26186 1.07369 1.10067 1.05985 1.21601 1.03215 0.99440 0.91087 1.83984 1.51746 1.14132 1.17733 0.76251 0.84940 0.80055 0.73795 0.90767 0.90306 0.93585 0.91076 0.90335 0.89775 0.90052 0.91908 0.91957 0.92626 0.91756 0.90911 0.90103 0.90315 0.88685 0.90548 0.89236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.38 12.87 -148.98 -1.92 -2.30 16 2 C -0.02 0.00 2.99 71.24 0.21 0.22 16 3 Si 0.93 -0.21 26.34 68.60 1.81 1.60 16 4 H -0.24 -0.07 7.11 99.48 0.71 0.64 16 5 H -0.24 -0.40 7.11 99.48 0.71 0.31 16 6 H -0.25 -0.30 7.11 99.48 0.71 0.41 16 7 C -0.31 -0.80 5.74 24.58 0.14 -0.66 16 8 C 0.11 0.54 11.22 83.54 0.94 1.48 16 9 N -0.57 -4.19 9.91 -202.01 -2.00 -6.20 16 10 C 0.32 1.28 7.84 179.32 1.41 2.68 16 11 N -0.68 0.53 5.19 -331.77 -1.72 -1.19 16 12 C 0.15 -0.20 2.09 44.71 0.09 -0.10 16 13 C -0.11 0.05 5.24 30.91 0.16 0.21 16 14 C -0.42 0.57 4.96 72.44 0.36 0.93 16 15 Si 1.05 -5.40 10.56 68.60 0.72 -4.68 16 16 C -0.41 1.51 5.95 73.17 0.43 1.95 16 17 C -0.13 0.14 5.97 32.04 0.19 0.33 16 18 C -0.12 0.06 6.10 31.78 0.19 0.26 16 19 C -0.43 0.70 5.84 72.91 0.43 1.12 16 20 C -0.41 2.26 4.95 72.44 0.36 2.61 16 21 C -0.12 0.64 5.11 30.91 0.16 0.80 16 22 S 0.07 0.15 20.57 -56.49 -1.16 -1.01 16 23 H 0.39 -1.98 8.70 -74.06 -0.64 -2.62 16 24 H 0.13 -0.30 7.96 -2.39 -0.02 -0.32 16 25 H 0.18 0.48 8.06 -2.91 -0.02 0.46 16 26 H 0.42 -2.39 8.70 -92.71 -0.81 -3.20 16 27 H 0.07 0.20 7.46 -2.39 -0.02 0.18 16 28 H 0.08 -0.28 7.76 -2.38 -0.02 -0.30 16 29 H 0.05 0.22 7.92 -2.39 -0.02 0.20 16 30 H 0.07 0.06 7.97 -2.39 -0.02 0.04 16 31 H 0.08 -0.10 7.97 -2.39 -0.02 -0.12 16 32 H 0.08 -0.38 8.04 -2.39 -0.02 -0.40 16 33 H 0.08 -0.33 8.04 -2.38 -0.02 -0.35 16 34 H 0.06 -0.08 8.14 -2.38 -0.02 -0.10 16 35 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 36 H 0.05 0.03 8.14 -2.38 -0.02 0.01 16 37 H 0.06 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.07 -0.05 8.03 -2.39 -0.02 -0.07 16 39 H 0.08 -0.17 8.03 -2.39 -0.02 -0.19 16 40 H 0.08 -0.35 7.97 -2.39 -0.02 -0.37 16 41 H 0.09 -0.66 7.97 -2.39 -0.02 -0.68 16 42 H 0.08 -0.43 8.13 -2.39 -0.02 -0.45 16 43 H 0.09 -0.76 7.76 -2.39 -0.02 -0.78 16 Total: 0.00 -10.93 349.80 1.11 -9.82 By element: Atomic # 1 Polarization: -8.17 SS G_CDS: 0.30 Total: -7.87 kcal Atomic # 6 Polarization: 6.76 SS G_CDS: 5.07 Total: 11.84 kcal Atomic # 7 Polarization: -3.67 SS G_CDS: -3.72 Total: -7.39 kcal Atomic # 8 Polarization: -0.38 SS G_CDS: -1.92 Total: -2.30 kcal Atomic # 14 Polarization: -5.61 SS G_CDS: 2.53 Total: -3.08 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -1.16 Total: -1.01 kcal Total: -10.93 1.11 -9.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739292_15704118.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.686 kcal (2) G-P(sol) polarization free energy of solvation -10.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds