Wall clock time and date at job start Thu Mar 4 2021 12:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33327 * 125.95264 * 2 1 4 4 C 1.50697 * 122.71183 * 359.97360 * 3 2 1 5 5 O 1.42897 * 109.46989 * 330.00064 * 4 3 2 6 6 Si 1.86295 * 109.47380 * 209.99895 * 4 3 2 7 7 H 1.48503 * 109.47135 * 60.00122 * 6 4 3 8 8 H 1.48505 * 109.47291 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47541 * 300.00403 * 6 4 3 10 10 N 1.32121 * 114.57961 * 179.97438 * 3 2 1 11 11 C 1.29685 * 116.86754 * 0.02562 * 10 3 2 12 12 N 1.38614 * 124.94941 * 179.97438 * 11 10 3 13 13 C 1.46499 * 119.99813 * 179.72084 * 12 11 10 14 14 C 1.52576 * 108.90972 * 278.10835 * 13 12 11 15 15 C 1.54348 * 109.19867 * 161.48462 * 14 13 12 16 16 Si 1.85205 * 107.06756 * 56.71494 * 15 14 13 17 17 C 1.87766 * 111.38061 * 81.20009 * 16 15 14 18 18 C 1.56399 * 98.96075 * 98.20617 * 17 16 15 19 19 C 1.53767 * 109.78910 * 39.36782 * 18 17 16 20 20 C 1.55690 * 111.39645 * 312.19232 * 19 18 17 21 21 C 1.85207 * 110.01248 * 317.20323 * 16 15 14 22 22 C 1.52565 * 108.90778 * 155.27695 * 13 12 11 23 23 S 1.70961 * 110.10182 * 0.24066 * 11 10 3 24 24 H 1.09000 * 109.46752 * 90.00363 * 1 2 3 25 25 H 1.08997 * 109.47552 * 210.00039 * 1 2 3 26 26 H 1.08995 * 109.47319 * 330.00556 * 1 2 3 27 27 H 1.09004 * 109.46891 * 89.99841 * 4 3 2 28 28 H 0.96706 * 114.00272 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00338 * 0.02562 * 12 11 10 30 30 H 1.08999 * 108.88885 * 36.64765 * 13 12 11 31 31 H 1.09003 * 109.51287 * 281.40352 * 14 13 12 32 32 H 1.09004 * 109.51181 * 41.56260 * 14 13 12 33 33 H 1.09000 * 109.93877 * 297.32346 * 15 14 13 34 34 H 1.09009 * 109.93822 * 176.10436 * 15 14 13 35 35 H 1.09005 * 111.49856 * 215.64185 * 17 16 15 36 36 H 1.09005 * 111.49913 * 340.76344 * 17 16 15 37 37 H 1.09000 * 109.41549 * 279.26387 * 18 17 16 38 38 H 1.09002 * 109.41626 * 159.46903 * 18 17 16 39 39 H 1.09005 * 109.10078 * 191.68494 * 19 18 17 40 40 H 1.08994 * 109.10755 * 72.70877 * 19 18 17 41 41 H 1.08992 * 111.14903 * 270.08712 * 20 19 18 42 42 H 1.08998 * 111.17818 * 145.89143 * 20 19 18 43 43 H 1.09002 * 109.93766 * 283.40163 * 21 16 15 44 44 H 1.09009 * 110.00303 * 162.22194 * 21 16 15 45 45 H 1.09000 * 109.51456 * 318.42712 * 22 13 12 46 46 H 1.09008 * 109.51755 * 78.59519 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7415 2.4830 -0.0006 5 8 0.4816 2.5019 -0.6747 6 14 2.9327 3.6147 -0.8786 7 1 3.1133 3.1533 -2.2785 8 1 2.3926 4.9980 -0.8786 9 1 4.2420 3.5949 -0.1782 10 7 3.5850 0.8187 0.0005 11 6 3.9315 -0.4310 0.0005 12 7 5.2384 -0.8926 0.0005 13 6 5.5065 -2.3329 0.0066 14 6 5.3991 -2.8498 1.4381 15 6 5.2135 -4.3818 1.4120 16 14 6.6483 -5.0874 0.4773 17 6 8.1696 -5.2352 1.5679 18 6 8.0519 -6.7481 1.9465 19 6 7.5863 -7.5560 0.7238 20 6 6.3629 -6.8856 0.0324 21 6 6.9922 -4.0611 -1.0255 22 6 6.8849 -2.5818 -0.5982 23 16 2.5413 -1.4261 -0.0071 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6089 2.8217 1.0270 28 1 0.0690 3.3757 -0.7129 29 1 5.9756 -0.2621 0.0009 30 1 4.7566 -2.8340 -0.6055 31 1 6.3098 -2.6025 1.9838 32 1 4.5427 -2.3873 1.9289 33 1 4.2808 -4.6347 0.9076 34 1 5.2044 -4.7726 2.4296 35 1 9.0832 -5.0333 1.0086 36 1 8.0940 -4.5961 2.4478 37 1 7.3294 -6.8643 2.7543 38 1 9.0238 -7.1160 2.2753 39 1 7.3088 -8.5602 1.0445 40 1 8.4061 -7.6258 0.0090 41 1 5.4255 -7.2504 0.4519 42 1 6.3913 -7.0328 -1.0472 43 1 6.2568 -4.2783 -1.8002 44 1 7.9956 -4.2687 -1.3972 45 1 7.0218 -1.9404 -1.4688 46 1 7.6531 -2.3602 0.1428 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_15739292_15704122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:30:22 Heat of formation + Delta-G solvation = -40.773788 kcal Electronic energy + Delta-G solvation = -23726.332080 eV Core-core repulsion = 20479.035751 eV Total energy + Delta-G solvation = -3247.296328 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.88691 -39.23558 -37.52783 -36.26153 -34.63989 -32.36038 -32.29131 -29.82152 -29.28654 -26.84402 -25.41369 -24.84084 -24.19257 -23.43057 -22.07000 -21.02878 -20.04127 -19.23725 -18.14293 -17.20957 -16.81746 -16.35052 -16.22584 -16.01911 -15.71549 -15.55340 -15.48674 -15.12072 -14.60191 -14.32527 -14.06278 -13.79168 -13.69597 -13.55547 -13.43260 -13.26948 -13.19945 -12.95258 -12.80870 -12.59720 -12.39375 -12.27159 -12.20184 -12.06512 -11.97013 -11.94106 -11.51791 -11.45610 -11.05998 -10.48413 -10.45896 -10.41561 -10.36523 -10.20240 -9.84868 -8.48166 0.17526 0.30169 0.91914 1.31002 1.58892 1.65108 1.68221 1.71905 1.75704 1.95770 2.02296 2.28369 2.49968 3.16891 3.49593 3.81244 3.93056 4.02496 4.04056 4.05202 4.11770 4.27494 4.29828 4.31474 4.44690 4.47338 4.51154 4.54354 4.57030 4.59094 4.64654 4.93327 4.95873 4.98160 5.00239 5.03150 5.05261 5.08258 5.11006 5.17850 5.24906 5.26708 5.29572 5.42171 5.43500 5.46484 5.71381 6.37862 6.61378 7.05490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.229 4.229 3 C 0.101 3.899 4 C -0.046 4.046 5 O -0.543 6.543 6 Si 0.979 3.021 7 H -0.257 1.257 8 H -0.265 1.265 9 H -0.246 1.246 10 N -0.551 5.551 11 C 0.322 3.678 12 N -0.693 5.693 13 C 0.142 3.858 14 C -0.127 4.127 15 C -0.407 4.407 16 Si 0.988 3.012 17 C -0.404 4.404 18 C -0.122 4.122 19 C -0.119 4.119 20 C -0.407 4.407 21 C -0.406 4.406 22 C -0.115 4.115 23 S 0.098 5.902 24 H 0.072 0.928 25 H 0.055 0.945 26 H 0.087 0.913 27 H 0.082 0.918 28 H 0.382 0.618 29 H 0.411 0.589 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.061 0.939 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 -1.555 0.785 1.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.352 4.352 3 C -0.028 4.028 4 C -0.159 4.159 5 O -0.349 6.349 6 Si 0.801 3.199 7 H -0.181 1.181 8 H -0.190 1.190 9 H -0.169 1.169 10 N -0.278 5.278 11 C -0.050 4.050 12 N -0.333 5.333 13 C 0.037 3.963 14 C -0.166 4.166 15 C -0.494 4.494 16 Si 1.183 2.817 17 C -0.490 4.490 18 C -0.159 4.159 19 C -0.156 4.156 20 C -0.494 4.494 21 C -0.493 4.493 22 C -0.153 4.153 23 S 0.347 5.653 24 H 0.090 0.910 25 H 0.074 0.926 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.230 0.770 29 H 0.249 0.751 30 H 0.100 0.900 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.103 0.897 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.100 0.900 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.353 -2.489 0.261 2.846 hybrid contribution -0.262 1.208 0.382 1.293 sum 1.091 -1.282 0.643 1.802 Atomic orbital electron populations 1.20088 0.86397 1.02344 1.02750 1.25117 1.01401 0.92593 1.16050 1.18783 0.86489 0.95065 1.02486 1.23968 0.92862 0.97691 1.01369 1.86487 1.33803 1.35469 1.79131 0.85194 0.78836 0.75489 0.80421 1.18085 1.19027 1.16930 1.65826 1.17087 1.16980 1.27929 1.23177 0.91936 0.91230 0.98620 1.44146 1.01671 1.07037 1.80417 1.21291 0.98918 0.78909 0.97209 1.21861 1.03320 0.95612 0.95804 1.26176 1.14029 0.99714 1.09482 0.79792 0.67856 0.66963 0.67074 1.26655 1.14110 0.98331 1.09939 1.22024 1.01594 0.94290 0.98028 1.21839 0.97272 0.99582 0.96949 1.26491 1.00206 1.19158 1.03514 1.26168 1.06099 1.02606 1.14427 1.21538 0.94784 0.97523 1.01416 1.83956 0.96531 1.10599 1.74230 0.90973 0.92589 0.89492 0.90034 0.76975 0.75061 0.89954 0.90819 0.91003 0.90013 0.89663 0.90310 0.90336 0.91820 0.91654 0.91902 0.92001 0.90350 0.90259 0.90016 0.89479 0.90509 0.90536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.08 8.96 36.00 0.32 0.24 16 2 C -0.23 -0.77 6.50 -36.03 -0.23 -1.01 16 3 C 0.10 0.41 5.95 -84.18 -0.50 -0.09 16 4 C -0.05 -0.07 2.81 36.00 0.10 0.03 16 5 O -0.54 -0.13 9.86 -35.23 -0.35 -0.48 16 6 Si 0.98 1.97 27.37 -169.99 -4.65 -2.68 16 7 H -0.26 -1.10 7.11 56.52 0.40 -0.70 16 8 H -0.27 -0.31 7.11 56.52 0.40 0.09 16 9 H -0.25 -0.91 7.11 56.52 0.40 -0.50 16 10 N -0.55 -2.59 8.95 -11.36 -0.10 -2.70 16 11 C 0.32 0.98 7.98 -87.68 -0.70 0.28 16 12 N -0.69 -0.37 5.19 -56.22 -0.29 -0.67 16 13 C 0.14 -0.18 1.90 -68.37 -0.13 -0.31 16 14 C -0.13 0.18 5.24 -26.24 -0.14 0.05 16 15 C -0.41 0.95 4.96 37.86 0.19 1.14 16 16 Si 0.99 -3.14 10.56 -169.99 -1.80 -4.93 16 17 C -0.40 0.77 5.95 38.99 0.23 1.00 16 18 C -0.12 0.13 5.97 -24.50 -0.15 -0.02 16 19 C -0.12 0.11 6.10 -24.90 -0.15 -0.04 16 20 C -0.41 0.71 5.84 38.59 0.23 0.93 16 21 C -0.41 1.15 4.95 37.87 0.19 1.34 16 22 C -0.11 0.28 5.11 -26.25 -0.13 0.14 16 23 S 0.10 0.21 21.56 -107.50 -2.32 -2.10 16 24 H 0.07 0.11 8.14 -51.93 -0.42 -0.31 16 25 H 0.06 0.03 8.14 -51.93 -0.42 -0.39 16 26 H 0.09 0.09 6.62 -51.93 -0.34 -0.25 16 27 H 0.08 -0.02 7.96 -51.93 -0.41 -0.44 16 28 H 0.38 -1.64 8.74 45.56 0.40 -1.24 16 29 H 0.41 -0.13 8.70 -40.82 -0.36 -0.49 16 30 H 0.08 -0.08 6.97 -51.93 -0.36 -0.45 16 31 H 0.07 -0.16 7.76 -51.93 -0.40 -0.56 16 32 H 0.07 0.00 7.66 -51.93 -0.40 -0.39 16 33 H 0.08 -0.19 7.97 -51.93 -0.41 -0.61 16 34 H 0.08 -0.20 7.97 -51.92 -0.41 -0.61 16 35 H 0.08 -0.15 8.04 -51.93 -0.42 -0.57 16 36 H 0.08 -0.16 8.04 -51.93 -0.42 -0.57 16 37 H 0.06 -0.08 8.14 -51.93 -0.42 -0.51 16 38 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 39 H 0.06 -0.04 8.14 -51.93 -0.42 -0.47 16 40 H 0.06 -0.06 8.14 -51.93 -0.42 -0.49 16 41 H 0.08 -0.13 8.03 -51.93 -0.42 -0.55 16 42 H 0.08 -0.15 8.03 -51.93 -0.42 -0.56 16 43 H 0.08 -0.23 7.97 -51.93 -0.41 -0.64 16 44 H 0.09 -0.26 7.97 -51.92 -0.41 -0.67 16 45 H 0.08 -0.15 8.13 -51.93 -0.42 -0.57 16 46 H 0.08 -0.25 7.76 -51.92 -0.40 -0.66 16 LS Contribution 366.21 15.07 5.52 5.52 Total: 0.00 -5.70 366.21 -12.22 -17.93 By element: Atomic # 1 Polarization: -6.22 SS G_CDS: -7.36 Total: -13.58 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: -0.88 Total: 3.69 kcal Atomic # 7 Polarization: -2.97 SS G_CDS: -0.39 Total: -3.36 kcal Atomic # 8 Polarization: -0.13 SS G_CDS: -0.35 Total: -0.48 kcal Atomic # 14 Polarization: -1.17 SS G_CDS: -6.45 Total: -7.62 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.32 Total: -2.10 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -5.70 -12.22 -17.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739292_15704122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.847 kcal (2) G-P(sol) polarization free energy of solvation -5.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds