Wall clock time and date at job start Thu Mar 4 2021 12:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33327 * 125.95264 * 2 1 4 4 C 1.50697 * 122.71183 * 359.97360 * 3 2 1 5 5 O 1.42897 * 109.46989 * 330.00064 * 4 3 2 6 6 Si 1.86295 * 109.47380 * 209.99895 * 4 3 2 7 7 H 1.48503 * 109.47135 * 60.00122 * 6 4 3 8 8 H 1.48505 * 109.47291 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47541 * 300.00403 * 6 4 3 10 10 N 1.32121 * 114.57961 * 179.97438 * 3 2 1 11 11 C 1.29685 * 116.86754 * 0.02562 * 10 3 2 12 12 N 1.38614 * 124.94941 * 179.97438 * 11 10 3 13 13 C 1.46499 * 119.99813 * 179.72084 * 12 11 10 14 14 C 1.52576 * 108.90972 * 278.10835 * 13 12 11 15 15 C 1.54348 * 109.19867 * 161.48462 * 14 13 12 16 16 Si 1.85205 * 107.06756 * 56.71494 * 15 14 13 17 17 C 1.87766 * 111.38061 * 81.20009 * 16 15 14 18 18 C 1.56399 * 98.96075 * 98.20617 * 17 16 15 19 19 C 1.53767 * 109.78910 * 39.36782 * 18 17 16 20 20 C 1.55690 * 111.39645 * 312.19232 * 19 18 17 21 21 C 1.85207 * 110.01248 * 317.20323 * 16 15 14 22 22 C 1.52565 * 108.90778 * 155.27695 * 13 12 11 23 23 S 1.70961 * 110.10182 * 0.24066 * 11 10 3 24 24 H 1.09000 * 109.46752 * 90.00363 * 1 2 3 25 25 H 1.08997 * 109.47552 * 210.00039 * 1 2 3 26 26 H 1.08995 * 109.47319 * 330.00556 * 1 2 3 27 27 H 1.09004 * 109.46891 * 89.99841 * 4 3 2 28 28 H 0.96706 * 114.00272 * 179.97438 * 5 4 3 29 29 H 0.97001 * 120.00338 * 0.02562 * 12 11 10 30 30 H 1.08999 * 108.88885 * 36.64765 * 13 12 11 31 31 H 1.09003 * 109.51287 * 281.40352 * 14 13 12 32 32 H 1.09004 * 109.51181 * 41.56260 * 14 13 12 33 33 H 1.09000 * 109.93877 * 297.32346 * 15 14 13 34 34 H 1.09009 * 109.93822 * 176.10436 * 15 14 13 35 35 H 1.09005 * 111.49856 * 215.64185 * 17 16 15 36 36 H 1.09005 * 111.49913 * 340.76344 * 17 16 15 37 37 H 1.09000 * 109.41549 * 279.26387 * 18 17 16 38 38 H 1.09002 * 109.41626 * 159.46903 * 18 17 16 39 39 H 1.09005 * 109.10078 * 191.68494 * 19 18 17 40 40 H 1.08994 * 109.10755 * 72.70877 * 19 18 17 41 41 H 1.08992 * 111.14903 * 270.08712 * 20 19 18 42 42 H 1.08998 * 111.17818 * 145.89143 * 20 19 18 43 43 H 1.09002 * 109.93766 * 283.40163 * 21 16 15 44 44 H 1.09009 * 110.00303 * 162.22194 * 21 16 15 45 45 H 1.09000 * 109.51456 * 318.42712 * 22 13 12 46 46 H 1.09008 * 109.51755 * 78.59519 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0793 0.0000 4 6 1.7415 2.4830 -0.0006 5 8 0.4816 2.5019 -0.6747 6 14 2.9327 3.6147 -0.8786 7 1 3.1133 3.1533 -2.2785 8 1 2.3926 4.9980 -0.8786 9 1 4.2420 3.5949 -0.1782 10 7 3.5850 0.8187 0.0005 11 6 3.9315 -0.4310 0.0005 12 7 5.2384 -0.8926 0.0005 13 6 5.5065 -2.3329 0.0066 14 6 5.3991 -2.8498 1.4381 15 6 5.2135 -4.3818 1.4120 16 14 6.6483 -5.0874 0.4773 17 6 8.1696 -5.2352 1.5679 18 6 8.0519 -6.7481 1.9465 19 6 7.5863 -7.5560 0.7238 20 6 6.3629 -6.8856 0.0324 21 6 6.9922 -4.0611 -1.0255 22 6 6.8849 -2.5818 -0.5982 23 16 2.5413 -1.4261 -0.0071 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3634 0.8900 0.5137 27 1 1.6089 2.8217 1.0270 28 1 0.0690 3.3757 -0.7129 29 1 5.9756 -0.2621 0.0009 30 1 4.7566 -2.8340 -0.6055 31 1 6.3098 -2.6025 1.9838 32 1 4.5427 -2.3873 1.9289 33 1 4.2808 -4.6347 0.9076 34 1 5.2044 -4.7726 2.4296 35 1 9.0832 -5.0333 1.0086 36 1 8.0940 -4.5961 2.4478 37 1 7.3294 -6.8643 2.7543 38 1 9.0238 -7.1160 2.2753 39 1 7.3088 -8.5602 1.0445 40 1 8.4061 -7.6258 0.0090 41 1 5.4255 -7.2504 0.4519 42 1 6.3913 -7.0328 -1.0472 43 1 6.2568 -4.2783 -1.8002 44 1 7.9956 -4.2687 -1.3972 45 1 7.0218 -1.9404 -1.4688 46 1 7.6531 -2.3602 0.1428 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15739292_15704122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:30:21 Heat of formation + Delta-G solvation = -32.640097 kcal Electronic energy + Delta-G solvation = -23725.979376 eV Core-core repulsion = 20479.035751 eV Total energy + Delta-G solvation = -3246.943625 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.03464 -39.19561 -37.54069 -36.14352 -34.65072 -32.43772 -32.12379 -29.67371 -29.36315 -26.76325 -25.52513 -24.74230 -24.18414 -23.34209 -21.98671 -20.93192 -20.12192 -19.33789 -18.16898 -17.31720 -16.79346 -16.43938 -16.15336 -15.91534 -15.69072 -15.61900 -15.47033 -15.07217 -14.68413 -14.18942 -14.02928 -13.87614 -13.65477 -13.47722 -13.40257 -13.21303 -13.05776 -12.92178 -12.81154 -12.50544 -12.33887 -12.23146 -12.17315 -12.12225 -11.94652 -11.87303 -11.59563 -11.34990 -11.11762 -10.61188 -10.37910 -10.30792 -10.20541 -10.19379 -9.98007 -8.60478 -0.00246 0.15294 0.75519 1.17077 1.47355 1.55289 1.77364 1.82371 1.89506 1.91800 1.98329 2.11571 2.67525 3.16624 3.62678 3.92776 3.98735 4.06003 4.15681 4.16385 4.19332 4.29193 4.39452 4.41583 4.44765 4.49591 4.55884 4.67235 4.70267 4.71888 4.80259 4.89497 4.92966 5.10693 5.13213 5.14185 5.15329 5.18073 5.21186 5.23270 5.36567 5.38029 5.42123 5.46089 5.55594 5.57654 5.69439 6.32812 6.85375 6.90343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 C -0.247 4.247 3 C 0.080 3.920 4 C -0.039 4.039 5 O -0.551 6.551 6 Si 1.008 2.992 7 H -0.295 1.295 8 H -0.247 1.247 9 H -0.274 1.274 10 N -0.580 5.580 11 C 0.311 3.689 12 N -0.687 5.687 13 C 0.140 3.860 14 C -0.126 4.126 15 C -0.416 4.416 16 Si 1.053 2.947 17 C -0.416 4.416 18 C -0.128 4.128 19 C -0.124 4.124 20 C -0.423 4.423 21 C -0.412 4.412 22 C -0.114 4.114 23 S 0.114 5.886 24 H 0.070 0.930 25 H 0.063 0.937 26 H 0.092 0.908 27 H 0.102 0.898 28 H 0.402 0.598 29 H 0.414 0.586 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.056 0.944 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.056 0.944 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.093 0.907 45 H 0.073 0.927 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.070 -1.454 0.961 1.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.370 4.370 3 C -0.049 4.049 4 C -0.152 4.152 5 O -0.360 6.360 6 Si 0.834 3.166 7 H -0.221 1.221 8 H -0.171 1.171 9 H -0.199 1.199 10 N -0.308 5.308 11 C -0.060 4.060 12 N -0.327 5.327 13 C 0.036 3.964 14 C -0.165 4.165 15 C -0.502 4.502 16 Si 1.243 2.757 17 C -0.501 4.501 18 C -0.165 4.165 19 C -0.162 4.162 20 C -0.508 4.508 21 C -0.498 4.498 22 C -0.152 4.152 23 S 0.363 5.637 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.119 0.881 28 H 0.253 0.747 29 H 0.253 0.747 30 H 0.099 0.901 31 H 0.101 0.899 32 H 0.075 0.925 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.099 0.901 43 H 0.102 0.898 44 H 0.112 0.888 45 H 0.092 0.908 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.026 -2.380 0.449 2.630 hybrid contribution -0.113 1.129 0.306 1.175 sum 0.912 -1.251 0.754 1.722 Atomic orbital electron populations 1.20098 0.85306 1.02997 1.02764 1.25436 1.02365 0.92898 1.16253 1.19226 0.86538 0.96448 1.02675 1.23859 0.92987 0.96069 1.02302 1.86448 1.33114 1.37392 1.79020 0.84824 0.77739 0.76440 0.77595 1.22080 1.17098 1.19935 1.65881 1.17774 1.17885 1.29254 1.23475 0.92987 0.91279 0.98300 1.44332 1.00987 1.07886 1.79501 1.21445 0.99660 0.77836 0.97486 1.21852 1.03101 0.96099 0.95487 1.26314 1.14823 0.99066 1.09957 0.78842 0.66023 0.65055 0.65753 1.26810 1.15142 0.97600 1.10553 1.22071 1.01350 0.95028 0.98061 1.21886 0.97705 0.99457 0.97122 1.26680 0.99750 1.20742 1.03595 1.26251 1.06602 1.02217 1.14779 1.21554 0.94231 0.97804 1.01583 1.83779 0.95880 1.09996 1.74077 0.91183 0.91812 0.88951 0.88063 0.74662 0.74729 0.90147 0.89937 0.92548 0.89886 0.89465 0.90171 0.90102 0.91656 0.92249 0.92557 0.92013 0.90446 0.90067 0.89824 0.88845 0.90818 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.15 8.96 71.23 0.64 0.49 16 2 C -0.25 -1.76 6.50 24.57 0.16 -1.60 16 3 C 0.08 0.70 5.95 41.40 0.25 0.95 16 4 C -0.04 -0.11 2.81 71.24 0.20 0.09 16 5 O -0.55 0.08 9.86 -148.98 -1.47 -1.39 16 6 Si 1.01 4.76 27.37 68.60 1.88 6.64 16 7 H -0.29 -3.16 7.11 99.48 0.71 -2.45 16 8 H -0.25 -0.34 7.11 99.48 0.71 0.37 16 9 H -0.27 -2.50 7.11 99.48 0.71 -1.79 16 10 N -0.58 -6.10 8.95 -189.86 -1.70 -7.80 16 11 C 0.31 2.16 7.98 179.32 1.43 3.59 16 12 N -0.69 -1.11 5.19 -331.77 -1.72 -2.83 16 13 C 0.14 -0.36 1.90 44.71 0.09 -0.28 16 14 C -0.13 0.38 5.24 30.91 0.16 0.55 16 15 C -0.42 2.10 4.96 72.44 0.36 2.46 16 16 Si 1.05 -7.31 10.56 68.60 0.72 -6.59 16 17 C -0.42 1.78 5.95 73.17 0.44 2.22 16 18 C -0.13 0.25 5.97 32.04 0.19 0.44 16 19 C -0.12 0.20 6.10 31.78 0.19 0.39 16 20 C -0.42 1.53 5.84 72.91 0.43 1.95 16 21 C -0.41 2.70 4.95 72.44 0.36 3.06 16 22 C -0.11 0.62 5.11 30.91 0.16 0.78 16 23 S 0.11 0.56 21.56 -56.49 -1.22 -0.66 16 24 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 25 H 0.06 0.05 8.14 -2.39 -0.02 0.03 16 26 H 0.09 0.14 6.62 -2.39 -0.02 0.12 16 27 H 0.10 -0.13 7.96 -2.38 -0.02 -0.15 16 28 H 0.40 -3.94 8.74 -74.05 -0.65 -4.59 16 29 H 0.41 0.00 8.70 -92.71 -0.81 -0.81 16 30 H 0.08 -0.17 6.97 -2.39 -0.02 -0.18 16 31 H 0.08 -0.40 7.76 -2.39 -0.02 -0.42 16 32 H 0.06 0.03 7.66 -2.38 -0.02 0.01 16 33 H 0.08 -0.42 7.97 -2.39 -0.02 -0.44 16 34 H 0.09 -0.45 7.97 -2.38 -0.02 -0.47 16 35 H 0.08 -0.35 8.04 -2.38 -0.02 -0.37 16 36 H 0.08 -0.37 8.04 -2.38 -0.02 -0.39 16 37 H 0.06 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.06 -0.06 8.14 -2.39 -0.02 -0.08 16 39 H 0.06 -0.04 8.14 -2.38 -0.02 -0.06 16 40 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 41 H 0.08 -0.26 8.03 -2.39 -0.02 -0.28 16 42 H 0.08 -0.32 8.03 -2.39 -0.02 -0.34 16 43 H 0.08 -0.54 7.97 -2.39 -0.02 -0.56 16 44 H 0.09 -0.67 7.97 -2.38 -0.02 -0.69 16 45 H 0.07 -0.32 8.13 -2.39 -0.02 -0.34 16 46 H 0.09 -0.68 7.76 -2.38 -0.02 -0.70 16 Total: 0.00 -14.05 366.21 1.81 -12.23 By element: Atomic # 1 Polarization: -14.98 SS G_CDS: 0.27 Total: -14.70 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 5.04 Total: 15.10 kcal Atomic # 7 Polarization: -7.21 SS G_CDS: -3.42 Total: -10.63 kcal Atomic # 8 Polarization: 0.08 SS G_CDS: -1.47 Total: -1.39 kcal Atomic # 14 Polarization: -2.55 SS G_CDS: 2.60 Total: 0.05 kcal Atomic # 16 Polarization: 0.56 SS G_CDS: -1.22 Total: -0.66 kcal Total: -14.05 1.81 -12.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739292_15704122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.406 kcal (2) G-P(sol) polarization free energy of solvation -14.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds