Wall clock time and date at job start Thu Mar 4 2021 12:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42894 * 1 3 3 Si 1.86295 * 109.47531 * 2 1 4 4 H 1.48499 * 109.46901 * 299.99853 * 3 2 1 5 5 H 1.48505 * 109.47225 * 59.99655 * 3 2 1 6 6 H 1.48496 * 109.47700 * 179.97438 * 3 2 1 7 7 C 1.50698 * 109.47113 * 239.99455 * 2 1 3 8 8 C 1.38859 * 120.33261 * 300.02683 * 7 2 1 9 9 C 1.38478 * 118.48631 * 179.97438 * 8 7 2 10 10 F 1.35107 * 120.46998 * 180.02562 * 9 8 7 11 11 C 1.39303 * 119.06227 * 359.97438 * 9 8 7 12 12 N 1.39143 * 119.72119 * 180.02562 * 11 9 8 13 13 C 1.46492 * 120.00234 * 179.97438 * 12 11 9 14 14 C 1.52571 * 108.90962 * 277.82942 * 13 12 11 15 15 C 1.54358 * 109.19855 * 161.48043 * 14 13 12 16 16 Si 1.85203 * 107.06095 * 56.71787 * 15 14 13 17 17 C 1.87772 * 111.38248 * 81.20180 * 16 15 14 18 18 C 1.56400 * 98.95907 * 98.20147 * 17 16 15 19 19 C 1.53775 * 109.79299 * 39.36990 * 18 17 16 20 20 C 1.55688 * 111.39197 * 312.19217 * 19 18 17 21 21 C 1.85213 * 110.01806 * 317.19974 * 16 15 14 22 22 C 1.52575 * 108.90795 * 154.99976 * 13 12 11 23 23 N 1.32365 * 120.56290 * 359.97438 * 11 9 8 24 24 C 1.31977 * 121.64587 * 0.02562 * 23 11 9 25 25 H 0.96710 * 113.99920 * 59.99836 * 1 2 3 26 26 H 1.09006 * 109.46651 * 119.99923 * 2 1 3 27 27 H 1.08000 * 120.75170 * 359.95269 * 8 7 2 28 28 H 0.97007 * 119.99793 * 359.97438 * 12 11 9 29 29 H 1.09005 * 108.88509 * 36.36954 * 13 12 11 30 30 H 1.08994 * 109.51872 * 281.40147 * 14 13 12 31 31 H 1.09007 * 109.51086 * 41.56673 * 14 13 12 32 32 H 1.08997 * 109.93509 * 297.33257 * 15 14 13 33 33 H 1.08997 * 109.93533 * 176.10616 * 15 14 13 34 34 H 1.08995 * 111.49335 * 215.64009 * 17 16 15 35 35 H 1.08998 * 111.49390 * 340.75857 * 17 16 15 36 36 H 1.09002 * 109.41476 * 279.26801 * 18 17 16 37 37 H 1.09000 * 109.41787 * 159.46602 * 18 17 16 38 38 H 1.08996 * 109.10028 * 191.68623 * 19 18 17 39 39 H 1.08995 * 109.10286 * 72.70252 * 19 18 17 40 40 H 1.08998 * 111.14784 * 270.08296 * 20 19 18 41 41 H 1.09003 * 111.17938 * 145.89062 * 20 19 18 42 42 H 1.09000 * 109.93323 * 283.41024 * 21 16 15 43 43 H 1.09003 * 110.00313 * 162.22371 * 21 16 15 44 44 H 1.09000 * 109.51168 * 318.43065 * 22 13 12 45 45 H 1.08992 * 109.51605 * 78.54175 * 22 13 12 46 46 H 1.08004 * 119.55148 * 180.27203 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 1.5551 2.4564 -1.2125 5 1 1.5550 2.4565 1.2125 6 1 3.5350 1.7564 0.0006 7 6 1.9313 -0.7105 -1.2304 8 6 1.5996 -2.0397 -1.4571 9 6 2.0815 -2.6549 -2.6003 10 9 1.7832 -3.9466 -2.8608 11 6 2.8775 -1.9229 -3.4784 12 7 3.3686 -2.5273 -4.6315 13 6 4.2058 -1.7630 -5.5594 14 6 3.3049 -0.9345 -6.4704 15 6 4.1356 0.1963 -7.1136 16 14 5.5484 -0.6057 -8.0028 17 6 5.0208 -1.2503 -9.6857 18 6 5.5239 -0.0625 -10.5701 19 6 6.8791 0.4401 -10.0451 20 6 6.8485 0.6486 -8.5025 21 6 6.2705 -1.9548 -6.9593 22 6 5.0882 -2.7314 -6.3414 23 7 3.1697 -0.6568 -3.2258 24 6 2.7240 -0.0458 -2.1442 25 1 -0.3933 0.4418 -0.7651 26 1 1.7922 -0.5139 0.8901 27 1 0.9801 -2.5814 -0.7576 28 1 3.1567 -3.4548 -4.8208 29 1 4.8425 -1.0888 -4.9867 30 1 2.8915 -1.5724 -7.2516 31 1 2.4935 -0.5024 -5.8846 32 1 4.5145 0.8649 -6.3407 33 1 3.5204 0.7538 -7.8199 34 1 5.5328 -2.1794 -9.9359 35 1 3.9387 -1.3646 -9.7482 36 1 4.7975 0.7494 -10.5337 37 1 5.6372 -0.4003 -11.6002 38 1 7.1198 1.3870 -10.5283 39 1 7.6500 -0.2900 -10.2912 40 1 6.5357 1.6614 -8.2487 41 1 7.8140 0.4140 -8.0542 42 1 6.8860 -1.5245 -6.1693 43 1 6.8716 -2.6225 -7.5765 44 1 5.4692 -3.5005 -5.6694 45 1 4.5036 -3.1977 -7.1343 46 1 2.9796 0.9896 -1.9738 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15739292_17656566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:33:23 Heat of formation + Delta-G solvation = -80.513889 kcal Electronic energy + Delta-G solvation = -25665.290789 eV Core-core repulsion = 22013.202597 eV Total energy + Delta-G solvation = -3652.088191 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 324.154 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.94595 -41.46237 -39.01231 -37.65449 -36.14858 -34.74691 -33.18701 -32.05777 -31.21860 -29.67958 -27.36042 -26.00091 -24.93316 -24.32369 -23.55350 -22.80460 -21.61684 -20.85240 -19.31541 -18.50869 -18.33406 -17.65144 -17.00943 -16.47809 -16.11078 -16.07764 -15.95449 -15.83151 -15.69137 -15.52709 -15.16643 -14.71007 -14.62983 -14.19741 -14.09238 -13.71367 -13.51905 -13.36419 -13.21980 -12.95406 -12.83145 -12.55438 -12.49485 -12.19560 -12.11393 -12.10544 -12.00020 -11.92338 -11.74559 -11.35816 -11.25786 -10.73194 -10.60902 -10.39412 -10.30313 -10.21341 -10.16960 -8.75169 -0.09759 0.12270 1.19812 1.50451 1.54889 1.79700 1.92997 1.95595 1.95791 2.03526 2.54123 2.68536 3.03255 3.27323 3.49147 3.68770 3.77938 3.84297 3.99984 4.09884 4.13899 4.15520 4.23709 4.35237 4.41401 4.45972 4.52792 4.54927 4.66510 4.69229 4.70582 4.75339 4.85454 4.87313 4.99149 5.10605 5.13317 5.16668 5.21224 5.22437 5.30659 5.35301 5.37416 5.46960 5.49684 5.55264 5.59150 6.00211 6.21305 6.72313 6.97232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.553 6.553 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.249 1.249 5 H -0.271 1.271 6 H -0.252 1.252 7 C -0.206 4.206 8 C -0.036 4.036 9 C -0.038 4.038 10 F -0.140 7.140 11 C 0.381 3.619 12 N -0.713 5.713 13 C 0.147 3.853 14 C -0.114 4.114 15 C -0.413 4.413 16 Si 1.052 2.948 17 C -0.415 4.415 18 C -0.127 4.127 19 C -0.123 4.123 20 C -0.422 4.422 21 C -0.410 4.410 22 C -0.117 4.117 23 N -0.525 5.525 24 C 0.133 3.867 25 H 0.389 0.611 26 H 0.129 0.871 27 H 0.160 0.840 28 H 0.415 0.585 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.083 0.917 46 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.047 0.673 -0.852 1.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.175 4.175 3 Si 0.797 3.203 4 H -0.172 1.172 5 H -0.196 1.196 6 H -0.176 1.176 7 C -0.212 4.212 8 C -0.062 4.062 9 C -0.064 4.064 10 F -0.119 7.119 11 C 0.142 3.858 12 N -0.345 5.345 13 C 0.043 3.957 14 C -0.152 4.152 15 C -0.499 4.499 16 Si 1.243 2.757 17 C -0.500 4.500 18 C -0.165 4.165 19 C -0.161 4.161 20 C -0.507 4.507 21 C -0.497 4.497 22 C -0.155 4.155 23 N -0.242 5.242 24 C -0.024 4.024 25 H 0.238 0.762 26 H 0.146 0.854 27 H 0.177 0.823 28 H 0.253 0.747 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.099 0.901 43 H 0.109 0.891 44 H 0.089 0.911 45 H 0.101 0.899 46 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 2.062 1.702 -1.010 2.858 hybrid contribution -0.908 -1.148 -0.171 1.474 sum 1.154 0.554 -1.181 1.741 Atomic orbital electron populations 1.86494 1.17456 1.81885 1.50115 1.24828 0.84831 1.10485 0.97313 0.85346 0.79997 0.74371 0.80553 1.17216 1.19629 1.17562 1.20993 1.04481 0.95043 1.00670 1.21426 0.95897 0.94507 0.94384 1.18159 1.07741 0.80888 0.99646 1.91468 1.92313 1.34037 1.94101 1.18599 0.90330 0.89227 0.87645 1.44866 1.54681 1.14826 1.20138 1.21116 0.91188 0.93356 0.90048 1.21669 0.98155 0.96943 0.98480 1.26293 1.12966 1.03238 1.07413 0.78850 0.65420 0.65950 0.65476 1.26789 1.04506 1.00910 1.17799 1.22070 0.96664 0.97768 0.99963 1.21883 0.97557 1.01042 0.95621 1.26667 1.12962 1.11625 0.99445 1.26219 1.02005 1.12241 1.09214 1.21591 0.96285 0.97722 0.99894 1.67346 1.26860 1.07678 1.22352 1.22672 0.92001 0.99856 0.87885 0.76187 0.85368 0.82273 0.74717 0.90051 0.90985 0.93207 0.90399 0.90200 0.90099 0.90216 0.91752 0.92104 0.92489 0.91912 0.90591 0.90084 0.90132 0.89074 0.91143 0.89853 0.81365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.81 12.78 -148.98 -1.90 -1.09 16 2 C -0.06 0.19 2.83 71.24 0.20 0.40 16 3 Si 0.97 -3.20 25.10 68.60 1.72 -1.48 16 4 H -0.25 0.81 7.11 99.48 0.71 1.51 16 5 H -0.27 -0.11 7.11 99.48 0.71 0.60 16 6 H -0.25 0.63 7.11 99.48 0.71 1.34 16 7 C -0.21 0.03 5.40 -19.76 -0.11 -0.08 16 8 C -0.04 -0.06 9.75 22.48 0.22 0.16 16 9 C -0.04 -0.16 7.35 22.58 0.17 0.00 16 10 F -0.14 -0.77 16.65 44.97 0.75 -0.02 16 11 C 0.38 1.73 7.25 133.07 0.96 2.69 16 12 N -0.71 -0.94 5.18 -325.66 -1.69 -2.63 16 13 C 0.15 -0.08 1.97 44.71 0.09 0.01 16 14 C -0.11 0.05 5.24 30.91 0.16 0.21 16 15 C -0.41 0.94 4.96 72.44 0.36 1.30 16 16 Si 1.05 -5.33 10.57 68.60 0.72 -4.61 16 17 C -0.41 1.24 5.95 73.17 0.44 1.67 16 18 C -0.13 0.12 5.97 32.04 0.19 0.31 16 19 C -0.12 0.08 6.10 31.78 0.19 0.28 16 20 C -0.42 0.92 5.84 72.91 0.43 1.35 16 21 C -0.41 1.92 4.95 72.44 0.36 2.27 16 22 C -0.12 0.44 5.11 30.91 0.16 0.59 16 23 N -0.53 -2.53 9.20 -193.03 -1.78 -4.31 16 24 C 0.13 0.19 9.84 84.62 0.83 1.02 16 25 H 0.39 -2.92 8.70 -74.05 -0.64 -3.57 16 26 H 0.13 -0.63 7.96 -2.38 -0.02 -0.65 16 27 H 0.16 -0.11 8.06 -2.91 -0.02 -0.14 16 28 H 0.42 -0.43 8.05 -92.70 -0.75 -1.18 16 29 H 0.08 0.15 7.25 -2.38 -0.02 0.13 16 30 H 0.07 -0.17 7.76 -2.39 -0.02 -0.19 16 31 H 0.05 0.19 7.91 -2.38 -0.02 0.17 16 32 H 0.08 -0.10 7.97 -2.39 -0.02 -0.12 16 33 H 0.08 -0.18 7.97 -2.39 -0.02 -0.20 16 34 H 0.08 -0.27 8.04 -2.39 -0.02 -0.29 16 35 H 0.08 -0.25 8.04 -2.39 -0.02 -0.27 16 36 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.06 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.06 0.01 8.14 -2.39 -0.02 -0.01 16 39 H 0.06 -0.07 8.14 -2.39 -0.02 -0.09 16 40 H 0.08 -0.14 8.03 -2.39 -0.02 -0.16 16 41 H 0.08 -0.21 8.03 -2.39 -0.02 -0.23 16 42 H 0.08 -0.34 7.97 -2.39 -0.02 -0.36 16 43 H 0.09 -0.51 7.97 -2.39 -0.02 -0.53 16 44 H 0.07 -0.21 8.13 -2.39 -0.02 -0.23 16 45 H 0.08 -0.49 7.76 -2.39 -0.02 -0.51 16 46 H 0.17 -0.39 4.88 -2.91 -0.01 -0.40 16 Total: 0.00 -10.28 362.34 2.83 -7.45 By element: Atomic # 1 Polarization: -5.87 SS G_CDS: 0.35 Total: -5.52 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: 4.65 Total: 12.19 kcal Atomic # 7 Polarization: -3.47 SS G_CDS: -3.46 Total: -6.93 kcal Atomic # 8 Polarization: 0.81 SS G_CDS: -1.90 Total: -1.09 kcal Atomic # 9 Polarization: -0.77 SS G_CDS: 0.75 Total: -0.02 kcal Atomic # 14 Polarization: -8.53 SS G_CDS: 2.45 Total: -6.08 kcal Total: -10.28 2.83 -7.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739292_17656566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.062 kcal (2) G-P(sol) polarization free energy of solvation -10.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds