Wall clock time and date at job start Thu Mar 4 2021 12:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86305 * 109.47152 * 2 1 4 4 H 1.48494 * 109.47122 * 300.00105 * 3 2 1 5 5 H 1.48498 * 109.46989 * 60.00120 * 3 2 1 6 6 H 1.48498 * 109.47141 * 180.02562 * 3 2 1 7 7 C 1.50696 * 109.46986 * 240.00235 * 2 1 3 8 8 C 1.38605 * 120.71969 * 299.99613 * 7 2 1 9 9 N 1.32273 * 119.19655 * 180.02562 * 8 7 2 10 10 C 1.32493 * 120.74480 * 0.02562 * 9 8 7 11 11 N 1.38408 * 119.22280 * 179.97438 * 10 9 8 12 12 C 1.46497 * 119.99965 * 180.02562 * 11 10 9 13 13 C 1.52553 * 108.99296 * 205.00126 * 12 11 10 14 14 C 1.53961 * 109.47306 * 162.08677 * 13 12 11 15 15 Si 1.86525 * 107.22835 * 58.20859 * 14 13 12 16 16 C 1.86519 * 110.13125 * 75.93026 * 15 14 13 17 17 C 1.53960 * 107.22536 * 75.92859 * 16 15 14 18 18 C 1.52554 * 109.47390 * 58.21056 * 17 16 15 19 19 C 1.52554 * 111.83887 * 282.74859 * 18 17 16 20 20 C 1.53835 * 109.54429 * 77.33395 * 19 18 17 21 21 C 1.86518 * 108.14467 * 315.53238 * 15 14 13 22 22 C 1.52550 * 108.99404 * 82.61274 * 12 11 10 23 23 N 1.32499 * 121.56160 * 0.27958 * 10 9 8 24 24 C 1.32273 * 120.74204 * 359.43400 * 23 10 9 25 25 H 0.96701 * 114.00331 * 59.99217 * 1 2 3 26 26 H 1.08996 * 109.47458 * 119.99789 * 2 1 3 27 27 H 1.07994 * 120.40298 * 0.02562 * 8 7 2 28 28 H 0.97001 * 119.99880 * 0.02562 * 11 10 9 29 29 H 1.09002 * 108.91433 * 323.80377 * 12 11 10 30 30 H 1.09004 * 109.47423 * 42.08804 * 13 12 11 31 31 H 1.09004 * 109.47330 * 282.08620 * 13 12 11 32 32 H 1.09009 * 109.90250 * 298.78124 * 14 13 12 33 33 H 1.08995 * 109.90741 * 177.64109 * 14 13 12 34 34 H 1.08994 * 109.90496 * 316.50211 * 16 15 14 35 35 H 1.08999 * 109.90221 * 195.35583 * 16 15 14 36 36 H 1.08999 * 109.47427 * 298.21044 * 17 16 15 37 37 H 1.09001 * 109.46931 * 178.20824 * 17 16 15 38 38 H 1.09002 * 108.99526 * 43.33193 * 18 17 16 39 39 H 1.09001 * 108.99706 * 162.16560 * 18 17 16 40 40 H 1.08994 * 109.47726 * 197.24291 * 19 18 17 41 41 H 1.09003 * 109.46650 * 317.23929 * 19 18 17 42 42 H 1.08997 * 109.91671 * 182.32064 * 20 19 18 43 43 H 1.09005 * 109.93752 * 61.15488 * 20 19 18 44 44 H 1.09000 * 109.89815 * 163.89172 * 21 15 14 45 45 H 1.08997 * 109.90440 * 285.02429 * 21 15 14 46 46 H 1.08996 * 109.46695 * 317.89836 * 22 12 11 47 47 H 1.09000 * 109.46868 * 77.90042 * 22 12 11 48 48 H 1.07995 * 120.40780 * 180.25657 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5550 2.4565 -1.2124 5 1 1.5550 2.4565 1.2125 6 1 3.5350 1.7565 -0.0006 7 6 1.9313 -0.7103 -1.2305 8 6 1.6056 -2.0371 -1.4646 9 7 2.0633 -2.6312 -2.5542 10 6 2.8248 -1.9728 -3.4156 11 7 3.2870 -2.6255 -4.5452 12 6 4.1305 -1.9139 -5.5087 13 6 3.9885 -2.5750 -6.8762 14 6 4.4859 -1.6094 -7.9673 15 14 6.2606 -1.1944 -7.5705 16 6 7.3707 -2.6232 -8.0234 17 6 7.5232 -2.6141 -9.5554 18 6 8.1022 -1.2749 -10.0010 19 6 7.0495 -0.1708 -9.9934 20 6 6.8053 0.2974 -8.5485 21 6 6.3802 -0.8427 -5.7426 22 6 5.5736 -1.9332 -5.0144 23 7 3.1592 -0.7060 -3.2183 24 6 2.7303 -0.0516 -2.1519 25 1 -0.3934 0.4418 -0.7650 26 1 1.7923 -0.5138 0.8899 27 1 0.9857 -2.5792 -0.7660 28 1 3.0524 -3.5541 -4.6989 29 1 3.7929 -0.8798 -5.5778 30 1 2.9410 -2.8174 -7.0556 31 1 4.5824 -3.4888 -6.9015 32 1 3.8826 -0.7015 -7.9625 33 1 4.4267 -2.0902 -8.9436 34 1 6.9186 -3.5611 -7.7011 35 1 8.3460 -2.4991 -7.5527 36 1 6.5474 -2.7602 -10.0186 37 1 8.1934 -3.4185 -9.8586 38 1 8.9127 -0.9970 -9.3272 39 1 8.5002 -1.3786 -11.0104 40 1 7.4006 0.6702 -10.5912 41 1 6.1195 -0.5527 -10.4144 42 1 6.0244 1.0577 -8.5315 43 1 7.7264 0.7009 -8.1278 44 1 7.4224 -0.8780 -5.4255 45 1 5.9583 0.1385 -5.5252 46 1 5.5926 -1.7436 -3.9413 47 1 6.0146 -2.9089 -5.2189 48 1 3.0028 0.9821 -1.9986 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15739364_12175864.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:33:35 Heat of formation + Delta-G solvation = -25.289009 kcal Electronic energy + Delta-G solvation = -25323.870833 eV Core-core repulsion = 21922.667818 eV Total energy + Delta-G solvation = -3401.203015 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13007 -39.07260 -37.78544 -37.31115 -34.93349 -34.60720 -32.09445 -31.96261 -31.83221 -27.71639 -26.97923 -26.03083 -25.35154 -23.56767 -23.25517 -22.99893 -21.43379 -21.02430 -19.40461 -18.73455 -18.01927 -16.62070 -16.58201 -16.35303 -16.19423 -15.95725 -15.88725 -15.64802 -15.11181 -15.04994 -14.86946 -14.73392 -14.30686 -13.80284 -13.68107 -13.37571 -13.25862 -13.22760 -13.00016 -12.73874 -12.64935 -12.30582 -12.22482 -12.17172 -12.16670 -11.94525 -11.91784 -11.87095 -11.64931 -11.56430 -11.46373 -11.24763 -10.53712 -10.21151 -10.13796 -10.07865 -10.01229 -9.09163 0.03144 0.13471 1.19545 1.47432 1.52240 1.80072 1.88533 1.93724 1.94265 1.98205 2.67834 2.79075 3.13347 3.54700 3.62033 3.70564 3.76928 3.81673 4.04006 4.07801 4.13760 4.22805 4.26168 4.30982 4.37324 4.50083 4.53582 4.61524 4.64875 4.69129 4.76248 4.82245 4.84783 4.86887 4.96414 5.03927 5.16182 5.17612 5.23746 5.26376 5.27712 5.30637 5.41044 5.44095 5.46718 5.51167 5.54550 5.66285 5.78848 6.04506 6.42023 6.71815 7.27362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.052 4.052 3 Si 0.970 3.030 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.256 1.256 7 C -0.288 4.288 8 C 0.217 3.783 9 N -0.590 5.590 10 C 0.552 3.448 11 N -0.690 5.690 12 C 0.153 3.847 13 C -0.115 4.115 14 C -0.407 4.407 15 Si 1.057 2.943 16 C -0.414 4.414 17 C -0.112 4.112 18 C -0.135 4.135 19 C -0.113 4.113 20 C -0.419 4.419 21 C -0.414 4.414 22 C -0.113 4.113 23 N -0.576 5.576 24 C 0.179 3.821 25 H 0.388 0.612 26 H 0.131 0.869 27 H 0.188 0.812 28 H 0.417 0.583 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.043 0.957 47 H 0.072 0.928 48 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.528 0.564 -1.502 1.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.357 6.357 2 C -0.164 4.164 3 Si 0.794 3.206 4 H -0.175 1.175 5 H -0.193 1.193 6 H -0.180 1.180 7 C -0.296 4.296 8 C 0.049 3.951 9 N -0.312 5.312 10 C 0.195 3.805 11 N -0.326 5.326 12 C 0.049 3.951 13 C -0.153 4.153 14 C -0.493 4.493 15 Si 1.247 2.753 16 C -0.500 4.500 17 C -0.150 4.150 18 C -0.172 4.172 19 C -0.151 4.151 20 C -0.505 4.505 21 C -0.499 4.499 22 C -0.151 4.151 23 N -0.299 5.299 24 C 0.012 3.988 25 H 0.237 0.763 26 H 0.148 0.852 27 H 0.205 0.795 28 H 0.255 0.745 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.097 0.903 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.092 0.908 46 H 0.061 0.939 47 H 0.091 0.909 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.392 0.703 -1.943 2.492 hybrid contribution -0.466 -0.028 0.341 0.578 sum 0.926 0.675 -1.602 1.970 Atomic orbital electron populations 1.86492 1.17379 1.81807 1.50045 1.24639 0.84767 1.10009 0.96993 0.85396 0.79734 0.74867 0.80611 1.17466 1.19340 1.18048 1.21795 1.07403 0.98263 1.02178 1.23191 0.90197 0.91062 0.90674 1.68028 1.16838 1.39902 1.06438 1.19663 0.87185 0.85947 0.87709 1.44492 1.53569 1.14894 1.19671 1.21113 0.89592 0.97161 0.87249 1.21519 1.02790 0.99391 0.91588 1.26250 1.18871 1.02836 1.01350 0.78600 0.66170 0.66243 0.64284 1.26367 1.10233 1.14222 0.99156 1.21276 1.01478 0.96768 0.95451 1.21531 0.98942 0.95102 1.01644 1.21255 0.99291 0.97956 0.96549 1.26379 1.05820 1.14190 1.04079 1.26384 1.02284 1.01073 1.20193 1.21588 0.94234 0.99681 0.99634 1.67961 1.28761 1.08781 1.24407 1.23142 0.89009 0.99600 0.87063 0.76304 0.85182 0.79474 0.74456 0.90178 0.91129 0.89788 0.90334 0.89085 0.90282 0.90888 0.91076 0.92455 0.91965 0.92108 0.92599 0.91103 0.90599 0.90887 0.90404 0.90791 0.93859 0.90894 0.80974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 1.07 12.79 -148.98 -1.90 -0.83 16 2 C -0.05 0.16 2.85 71.23 0.20 0.37 16 3 Si 0.97 -2.84 25.15 68.60 1.73 -1.12 16 4 H -0.25 0.68 7.11 99.48 0.71 1.39 16 5 H -0.27 -0.14 7.11 99.48 0.71 0.57 16 6 H -0.26 0.42 7.11 99.48 0.71 1.13 16 7 C -0.29 -0.17 5.40 -19.69 -0.11 -0.28 16 8 C 0.22 0.58 10.92 84.71 0.93 1.51 16 9 N -0.59 -4.09 10.46 -197.99 -2.07 -6.16 16 10 C 0.55 3.88 8.20 261.48 2.14 6.03 16 11 N -0.69 -1.99 5.19 -331.86 -1.72 -3.71 16 12 C 0.15 0.06 1.99 44.69 0.09 0.15 16 13 C -0.11 0.40 5.07 30.77 0.16 0.56 16 14 C -0.41 1.87 4.97 72.31 0.36 2.23 16 15 Si 1.06 -5.37 9.19 68.60 0.63 -4.74 16 16 C -0.41 1.49 4.97 72.31 0.36 1.85 16 17 C -0.11 0.29 5.64 30.77 0.17 0.47 16 18 C -0.13 0.24 5.40 30.30 0.16 0.40 16 19 C -0.11 0.23 5.62 30.73 0.17 0.40 16 20 C -0.42 1.14 4.97 72.26 0.36 1.49 16 21 C -0.41 0.63 4.97 72.30 0.36 0.99 16 22 C -0.11 -0.07 5.20 30.77 0.16 0.09 16 23 N -0.58 -3.97 9.18 -197.98 -1.82 -5.78 16 24 C 0.18 0.52 9.92 84.72 0.84 1.36 16 25 H 0.39 -2.95 8.70 -74.06 -0.64 -3.60 16 26 H 0.13 -0.70 7.96 -2.39 -0.02 -0.71 16 27 H 0.19 -0.32 8.06 -2.91 -0.02 -0.35 16 28 H 0.42 0.11 8.70 -92.71 -0.81 -0.69 16 29 H 0.08 0.24 7.26 -2.39 -0.02 0.23 16 30 H 0.07 -0.20 8.13 -2.38 -0.02 -0.22 16 31 H 0.08 -0.49 7.72 -2.39 -0.02 -0.51 16 32 H 0.08 -0.31 7.98 -2.38 -0.02 -0.33 16 33 H 0.09 -0.54 7.98 -2.39 -0.02 -0.55 16 34 H 0.08 -0.35 7.98 -2.39 -0.02 -0.37 16 35 H 0.07 -0.21 7.98 -2.39 -0.02 -0.23 16 36 H 0.07 -0.30 7.72 -2.39 -0.02 -0.32 16 37 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 38 H 0.06 -0.08 7.89 -2.39 -0.02 -0.10 16 39 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 40 H 0.06 -0.06 8.14 -2.39 -0.02 -0.07 16 41 H 0.07 -0.25 7.71 -2.39 -0.02 -0.27 16 42 H 0.08 -0.22 7.98 -2.39 -0.02 -0.24 16 43 H 0.07 -0.15 7.98 -2.38 -0.02 -0.17 16 44 H 0.08 -0.13 7.98 -2.39 -0.02 -0.15 16 45 H 0.07 -0.02 7.98 -2.39 -0.02 -0.03 16 46 H 0.04 0.24 7.90 -2.39 -0.02 0.22 16 47 H 0.07 -0.11 7.72 -2.39 -0.02 -0.13 16 48 H 0.17 -0.21 5.04 -2.91 -0.01 -0.23 16 Total: 0.00 -12.19 368.15 1.46 -10.73 By element: Atomic # 1 Polarization: -6.23 SS G_CDS: 0.25 Total: -5.97 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: 6.36 Total: 17.59 kcal Atomic # 7 Polarization: -10.05 SS G_CDS: -5.61 Total: -15.66 kcal Atomic # 8 Polarization: 1.07 SS G_CDS: -1.90 Total: -0.83 kcal Atomic # 14 Polarization: -8.21 SS G_CDS: 2.36 Total: -5.86 kcal Total: -12.19 1.46 -10.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739364_12175864.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.557 kcal (2) G-P(sol) polarization free energy of solvation -12.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -10.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds