Wall clock time and date at job start Thu Mar 4 2021 12:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86292 * 109.47372 * 2 1 4 4 H 1.48501 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47325 * 299.99819 * 3 2 1 6 6 H 1.48509 * 109.47422 * 59.99863 * 3 2 1 7 7 C 1.50707 * 109.46549 * 120.00174 * 2 1 3 8 8 C 1.38020 * 120.33048 * 244.99769 * 7 2 1 9 9 N 1.31978 * 120.85609 * 180.02562 * 8 7 2 10 10 C 1.32394 * 121.61949 * 359.97438 * 9 8 7 11 11 N 1.39008 * 119.70480 * 180.02562 * 10 9 8 12 12 C 1.46497 * 119.99813 * 179.97438 * 11 10 9 13 13 C 1.52553 * 108.99296 * 204.99872 * 12 11 10 14 14 C 1.53961 * 109.47306 * 162.08677 * 13 12 11 15 15 Si 1.86525 * 107.22835 * 58.20859 * 14 13 12 16 16 C 1.86519 * 110.13125 * 75.93026 * 15 14 13 17 17 C 1.53960 * 107.22536 * 75.92859 * 16 15 14 18 18 C 1.52554 * 109.47390 * 58.21056 * 17 16 15 19 19 C 1.52554 * 111.83887 * 282.74859 * 18 17 16 20 20 C 1.53835 * 109.54429 * 77.33395 * 19 18 17 21 21 C 1.86518 * 108.14467 * 315.53238 * 15 14 13 22 22 C 1.52550 * 108.99404 * 82.61020 * 12 11 10 23 23 C 1.39143 * 120.59186 * 0.27374 * 10 9 8 24 24 C 1.38294 * 119.09010 * 359.48039 * 23 10 9 25 25 H 0.96702 * 113.99603 * 59.99462 * 1 2 3 26 26 H 1.08993 * 109.47036 * 239.99529 * 2 1 3 27 27 H 1.07996 * 119.57586 * 0.02562 * 8 7 2 28 28 H 0.97001 * 120.00032 * 0.02562 * 11 10 9 29 29 H 1.09002 * 108.91433 * 323.80123 * 12 11 10 30 30 H 1.09004 * 109.47423 * 42.08804 * 13 12 11 31 31 H 1.09004 * 109.47330 * 282.08620 * 13 12 11 32 32 H 1.09009 * 109.90250 * 298.78124 * 14 13 12 33 33 H 1.08995 * 109.90741 * 177.64109 * 14 13 12 34 34 H 1.08994 * 109.90496 * 316.50211 * 16 15 14 35 35 H 1.08999 * 109.90221 * 195.35583 * 16 15 14 36 36 H 1.08999 * 109.47427 * 298.21044 * 17 16 15 37 37 H 1.09001 * 109.46931 * 178.20824 * 17 16 15 38 38 H 1.09002 * 108.99526 * 43.33193 * 18 17 16 39 39 H 1.09001 * 108.99706 * 162.16560 * 18 17 16 40 40 H 1.08994 * 109.47726 * 197.24291 * 19 18 17 41 41 H 1.09003 * 109.46650 * 317.23929 * 19 18 17 42 42 H 1.08997 * 109.91671 * 182.32064 * 20 19 18 43 43 H 1.09005 * 109.93752 * 61.15488 * 20 19 18 44 44 H 1.09000 * 109.89815 * 163.89172 * 21 15 14 45 45 H 1.08997 * 109.90440 * 285.02429 * 21 15 14 46 46 H 1.08996 * 109.46695 * 317.89836 * 22 12 11 47 47 H 1.09000 * 109.46868 * 77.90042 * 22 12 11 48 48 H 1.07997 * 120.45219 * 179.70609 * 23 10 9 49 49 H 1.08006 * 120.74730 * 180.22071 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0501 1.7564 0.0000 4 1 3.5351 1.7563 0.0006 5 1 1.5552 2.4564 -1.2125 6 1 1.5551 2.4565 1.2125 7 6 1.9312 -0.7105 1.2305 8 6 2.6382 -0.0202 2.1942 9 7 3.0833 -0.6321 3.2755 10 6 2.8713 -1.9230 3.4794 11 7 3.3577 -2.5271 4.6330 12 6 3.1264 -3.9549 4.8654 13 6 3.1746 -4.2280 6.3655 14 6 2.5061 -5.5827 6.6623 15 14 3.4249 -6.8783 5.6844 16 6 5.0584 -7.2596 6.5000 17 6 4.7606 -8.1400 7.7275 18 6 4.0335 -9.4049 7.2817 19 6 2.5613 -9.1380 6.9837 20 6 2.4297 -8.4540 5.6121 21 6 3.7056 -6.2164 3.9633 22 6 4.1782 -4.7582 4.1067 23 6 2.1705 -2.6815 2.5469 24 6 1.6873 -2.0663 1.4064 25 1 -0.3933 0.4418 -0.7650 26 1 1.7923 -0.5139 -0.8899 27 1 2.8298 1.0343 2.0617 28 1 3.8496 -2.0031 5.2844 29 1 2.1383 -4.2188 4.4883 30 1 2.6442 -3.4372 6.8961 31 1 4.2127 -4.2548 6.6968 32 1 1.4610 -5.5564 6.3533 33 1 2.5736 -5.8045 7.7273 34 1 5.5407 -6.3345 6.8152 35 1 5.7034 -7.7976 5.8053 36 1 4.1332 -7.5878 8.4271 37 1 5.6966 -8.4119 8.2153 38 1 4.5130 -9.7916 6.3825 39 1 4.1056 -10.1526 8.0715 40 1 2.0163 -10.0818 6.9706 41 1 2.1462 -8.4896 7.7553 42 1 1.3835 -8.2234 5.4111 43 1 2.8233 -9.1061 4.8323 44 1 4.4708 -6.8066 3.4591 45 1 2.7754 -6.2509 3.3962 46 1 4.3229 -4.3243 3.1174 47 1 5.1197 -4.7337 4.6555 48 1 2.0030 -3.7353 2.7132 49 1 1.1368 -2.6287 0.6667 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15739364_13915762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:33:50 Heat of formation + Delta-G solvation = -42.077770 kcal Electronic energy + Delta-G solvation = -25112.827778 eV Core-core repulsion = 21776.322658 eV Total energy + Delta-G solvation = -3336.505119 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 320.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.45534 -38.98435 -37.61200 -37.30821 -34.69430 -33.34625 -32.06171 -31.86301 -31.27171 -27.61086 -26.84946 -25.33260 -24.89325 -23.41216 -23.23588 -22.43769 -21.26317 -21.01902 -18.67330 -18.47807 -18.06585 -16.72831 -16.41579 -16.34801 -16.02165 -15.62843 -15.51545 -15.38290 -15.07404 -14.93004 -14.77787 -14.39148 -14.05192 -13.90576 -13.74924 -13.64890 -13.34816 -13.24523 -13.01102 -12.76641 -12.61153 -12.32154 -12.29550 -12.14530 -12.05535 -12.00292 -11.93086 -11.79874 -11.56719 -11.42497 -11.12240 -10.74207 -10.57039 -10.19990 -10.16474 -10.12300 -10.06600 -8.68003 0.20519 0.41252 1.19943 1.46078 1.51833 1.90473 1.91175 1.92885 1.96766 2.14144 2.69429 2.79778 3.53750 3.57392 3.75443 3.87228 4.01670 4.03195 4.04763 4.13785 4.13833 4.17618 4.30846 4.37744 4.39000 4.50543 4.52337 4.55122 4.65200 4.68319 4.75635 4.81112 4.83099 4.86891 4.96414 5.02366 5.04292 5.18682 5.22254 5.23637 5.26371 5.28717 5.31845 5.40981 5.43481 5.46627 5.52620 5.54068 5.56831 5.67642 6.05988 6.55679 6.87877 7.13921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.564 6.564 2 C -0.061 4.061 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.249 1.249 6 H -0.273 1.273 7 C -0.202 4.202 8 C 0.130 3.870 9 N -0.569 5.569 10 C 0.394 3.606 11 N -0.718 5.718 12 C 0.146 3.854 13 C -0.115 4.115 14 C -0.410 4.410 15 Si 1.058 2.942 16 C -0.418 4.418 17 C -0.113 4.113 18 C -0.134 4.134 19 C -0.114 4.114 20 C -0.420 4.420 21 C -0.413 4.413 22 C -0.123 4.123 23 C -0.242 4.242 24 C -0.009 4.009 25 H 0.397 0.603 26 H 0.097 0.903 27 H 0.151 0.849 28 H 0.405 0.595 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.055 0.945 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.152 0.848 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 -3.090 -1.522 3.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.173 4.173 3 Si 0.792 3.208 4 H -0.185 1.185 5 H -0.172 1.172 6 H -0.198 1.198 7 C -0.207 4.207 8 C -0.027 4.027 9 N -0.287 5.287 10 C 0.158 3.842 11 N -0.349 5.349 12 C 0.041 3.959 13 C -0.153 4.153 14 C -0.495 4.495 15 Si 1.248 2.752 16 C -0.503 4.503 17 C -0.150 4.150 18 C -0.172 4.172 19 C -0.151 4.151 20 C -0.505 4.505 21 C -0.499 4.499 22 C -0.161 4.161 23 C -0.266 4.266 24 C -0.035 4.035 25 H 0.248 0.752 26 H 0.114 0.886 27 H 0.168 0.832 28 H 0.240 0.760 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.073 0.927 47 H 0.090 0.910 48 H 0.169 0.831 49 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.412 -2.298 -0.318 2.357 hybrid contribution -0.327 -0.232 -0.701 0.808 sum 0.085 -2.530 -1.020 2.729 Atomic orbital electron populations 1.86466 1.17632 1.82112 1.51083 1.24431 0.85361 1.09916 0.97560 0.85461 0.79616 0.75487 0.80213 1.18520 1.17247 1.19840 1.20181 1.05665 0.95812 0.99056 1.22370 0.92960 0.99276 0.88066 1.67130 1.27169 1.10214 1.24151 1.18672 0.89585 0.88218 0.87767 1.44814 1.60181 1.09749 1.20201 1.21222 0.99803 0.78282 0.96576 1.21486 1.02392 0.98433 0.92943 1.26299 1.07166 1.06531 1.09553 0.78569 0.66008 0.65148 0.65445 1.26423 1.16872 1.03040 1.03983 1.21275 1.00172 0.95905 0.97683 1.21528 0.95890 0.98165 1.01608 1.21257 0.95883 1.00813 0.97186 1.26388 1.09307 1.15778 0.98999 1.26340 1.05037 0.99593 1.18943 1.21732 0.98814 0.95161 1.00433 1.21725 1.06141 1.02255 0.96525 1.21453 0.92738 0.93376 0.95924 0.75227 0.88553 0.83182 0.75956 0.89717 0.91487 0.90224 0.89982 0.89541 0.90572 0.90853 0.91273 0.92669 0.91857 0.92267 0.92615 0.91259 0.90375 0.90727 0.89964 0.89848 0.92651 0.90952 0.83058 0.82807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -0.19 12.82 -148.98 -1.91 -2.10 16 2 C -0.06 0.01 2.81 71.24 0.20 0.21 16 3 Si 0.97 0.05 25.16 68.60 1.73 1.78 16 4 H -0.26 -0.50 7.11 99.48 0.71 0.21 16 5 H -0.25 0.28 7.11 99.48 0.71 0.99 16 6 H -0.27 -1.17 7.05 99.48 0.70 -0.47 16 7 C -0.20 -1.04 5.39 -19.76 -0.11 -1.14 16 8 C 0.13 1.07 9.84 84.62 0.83 1.90 16 9 N -0.57 -5.96 10.39 -193.26 -2.01 -7.97 16 10 C 0.39 2.72 7.47 133.07 0.99 3.71 16 11 N -0.72 -1.63 5.21 -325.95 -1.70 -3.32 16 12 C 0.15 -0.32 1.75 44.69 0.08 -0.25 16 13 C -0.11 0.48 5.07 30.77 0.16 0.63 16 14 C -0.41 2.34 4.97 72.31 0.36 2.70 16 15 Si 1.06 -7.21 9.19 68.60 0.63 -6.58 16 16 C -0.42 1.72 4.97 72.31 0.36 2.08 16 17 C -0.11 0.30 5.64 30.77 0.17 0.47 16 18 C -0.13 0.29 5.40 30.30 0.16 0.45 16 19 C -0.11 0.30 5.62 30.73 0.17 0.48 16 20 C -0.42 1.80 4.97 72.26 0.36 2.16 16 21 C -0.41 2.16 4.97 72.30 0.36 2.52 16 22 C -0.12 0.33 4.93 30.77 0.15 0.48 16 23 C -0.24 -0.95 8.67 22.50 0.20 -0.76 16 24 C -0.01 -0.03 9.83 22.44 0.22 0.19 16 25 H 0.40 -3.54 8.74 -74.06 -0.65 -4.19 16 26 H 0.10 -0.47 7.96 -2.39 -0.02 -0.49 16 27 H 0.15 0.86 4.87 -2.91 -0.01 0.85 16 28 H 0.40 0.62 8.71 -92.71 -0.81 -0.18 16 29 H 0.08 -0.22 6.24 -2.39 -0.01 -0.23 16 30 H 0.07 -0.17 8.13 -2.38 -0.02 -0.19 16 31 H 0.08 -0.45 7.72 -2.39 -0.02 -0.47 16 32 H 0.08 -0.47 7.98 -2.38 -0.02 -0.49 16 33 H 0.09 -0.52 7.98 -2.39 -0.02 -0.54 16 34 H 0.08 -0.34 7.98 -2.39 -0.02 -0.36 16 35 H 0.07 -0.26 7.98 -2.39 -0.02 -0.28 16 36 H 0.07 -0.28 7.72 -2.39 -0.02 -0.30 16 37 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.06 -0.12 7.89 -2.39 -0.02 -0.14 16 39 H 0.06 -0.11 8.14 -2.39 -0.02 -0.12 16 40 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 41 H 0.07 -0.27 7.71 -2.39 -0.02 -0.29 16 42 H 0.08 -0.38 7.98 -2.39 -0.02 -0.39 16 43 H 0.07 -0.29 7.98 -2.38 -0.02 -0.30 16 44 H 0.08 -0.42 7.98 -2.39 -0.02 -0.44 16 45 H 0.08 -0.50 7.98 -2.39 -0.02 -0.52 16 46 H 0.05 0.03 7.47 -2.39 -0.02 0.02 16 47 H 0.07 -0.24 7.72 -2.39 -0.02 -0.26 16 48 H 0.15 -0.05 6.10 -2.91 -0.02 -0.07 16 49 H 0.15 -0.14 8.06 -2.91 -0.02 -0.16 16 Total: 0.00 -13.04 369.64 1.64 -11.40 By element: Atomic # 1 Polarization: -9.28 SS G_CDS: 0.23 Total: -9.05 kcal Atomic # 6 Polarization: 11.17 SS G_CDS: 4.67 Total: 15.84 kcal Atomic # 7 Polarization: -7.59 SS G_CDS: -3.71 Total: -11.30 kcal Atomic # 8 Polarization: -0.19 SS G_CDS: -1.91 Total: -2.10 kcal Atomic # 14 Polarization: -7.16 SS G_CDS: 2.36 Total: -4.80 kcal Total: -13.04 1.64 -11.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739364_13915762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.674 kcal (2) G-P(sol) polarization free energy of solvation -13.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds