Wall clock time and date at job start Thu Mar 4 2021 12:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86306 * 109.47037 * 2 1 4 4 H 1.48494 * 109.46788 * 299.99459 * 3 2 1 5 5 H 1.48493 * 109.47146 * 60.00013 * 3 2 1 6 6 H 1.48503 * 109.46592 * 179.97438 * 3 2 1 7 7 C 1.50696 * 109.47548 * 239.99603 * 2 1 3 8 8 C 1.33330 * 125.95135 * 300.00507 * 7 2 1 9 9 N 1.32120 * 114.57600 * 179.97438 * 8 7 2 10 10 C 1.29682 * 116.86966 * 0.02562 * 9 8 7 11 11 N 1.38607 * 124.95011 * 179.97438 * 10 9 8 12 12 C 1.46508 * 119.99929 * 0.02562 * 11 10 9 13 13 C 1.52552 * 109.00324 * 154.99985 * 12 11 10 14 14 C 1.53951 * 109.47681 * 197.93467 * 13 12 11 15 15 Si 1.86486 * 107.25545 * 301.81942 * 14 13 12 16 16 C 1.86546 * 110.13914 * 164.72743 * 15 14 13 17 17 C 1.53946 * 107.24854 * 76.06139 * 16 15 14 18 18 C 1.52570 * 109.46992 * 58.19567 * 17 16 15 19 19 C 1.52561 * 111.79219 * 282.70421 * 18 17 16 20 20 C 1.53836 * 109.54368 * 77.38876 * 19 18 17 21 21 C 1.86543 * 108.15585 * 44.37483 * 15 14 13 22 22 C 1.52544 * 109.00168 * 277.35058 * 12 11 10 23 23 S 1.70968 * 110.10118 * 0.23988 * 10 9 8 24 24 H 0.96696 * 113.99397 * 59.99917 * 1 2 3 25 25 H 1.09005 * 109.46920 * 119.99359 * 2 1 3 26 26 H 1.08001 * 122.71141 * 0.02562 * 8 7 2 27 27 H 0.97001 * 120.00336 * 180.02562 * 11 10 9 28 28 H 1.09002 * 108.92098 * 36.17656 * 12 11 10 29 29 H 1.09000 * 109.47146 * 77.93139 * 13 12 11 30 30 H 1.08999 * 109.47025 * 317.93557 * 13 12 11 31 31 H 1.09002 * 109.89961 * 182.38212 * 14 13 12 32 32 H 1.08998 * 109.89711 * 61.25667 * 14 13 12 33 33 H 1.08996 * 109.90227 * 316.62597 * 16 15 14 34 34 H 1.09000 * 109.96287 * 195.52751 * 16 15 14 35 35 H 1.08995 * 109.47579 * 298.19538 * 17 16 15 36 36 H 1.09001 * 109.46936 * 178.18985 * 17 16 15 37 37 H 1.09002 * 109.00533 * 43.27859 * 18 17 16 38 38 H 1.08998 * 109.00390 * 162.13620 * 18 17 16 39 39 H 1.08998 * 109.47230 * 197.29130 * 19 18 17 40 40 H 1.09001 * 109.47565 * 317.28547 * 19 18 17 41 41 H 1.08990 * 109.91660 * 182.31793 * 20 19 18 42 42 H 1.09008 * 109.93672 * 61.15388 * 20 19 18 43 43 H 1.09002 * 109.89950 * 75.05131 * 21 15 14 44 44 H 1.09001 * 109.89806 * 196.18079 * 21 15 14 45 45 H 1.08999 * 109.47335 * 282.05280 * 22 12 11 46 46 H 1.09007 * 109.47214 * 42.05940 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5551 2.4564 -1.2125 5 1 1.5550 2.4565 1.2124 6 1 3.5350 1.7564 0.0006 7 6 1.9314 -0.7105 -1.2303 8 6 1.6836 -1.9789 -1.5579 9 7 2.2378 -2.3722 -2.6909 10 6 2.9426 -1.4942 -3.3344 11 7 3.5960 -1.7256 -4.5347 12 6 3.5176 -3.0439 -5.1691 13 6 3.7454 -2.8876 -6.6694 14 6 3.2336 -4.1425 -7.3998 15 14 4.1554 -5.6046 -6.6996 16 6 3.2979 -7.1918 -7.1744 17 6 3.6306 -7.4660 -8.6522 18 6 5.1438 -7.5585 -8.8241 19 6 5.7992 -6.1808 -8.8229 20 6 5.8914 -5.6561 -7.3797 21 6 4.1982 -5.4299 -4.8429 22 6 4.5525 -3.9648 -4.5304 23 16 2.9544 -0.0117 -2.4829 24 1 -0.3932 0.4417 -0.7650 25 1 1.7923 -0.5138 0.8901 26 1 1.0779 -2.6318 -0.9469 27 1 4.1051 -1.0148 -4.9547 28 1 2.5231 -3.4579 -5.0023 29 1 4.8106 -2.7629 -6.8641 30 1 3.2053 -2.0120 -7.0295 31 1 3.4313 -4.0563 -8.4683 32 1 2.1639 -4.2614 -7.2279 33 1 2.2204 -7.0827 -7.0507 34 1 3.6613 -8.0110 -6.5540 35 1 3.2439 -6.6544 -9.2684 36 1 3.1720 -8.4059 -8.9595 37 1 5.5583 -8.1495 -8.0074 38 1 5.3640 -8.0554 -9.7688 39 1 6.8013 -6.2548 -9.2451 40 1 5.2021 -5.4938 -9.4226 41 1 6.3214 -4.6546 -7.3756 42 1 6.5055 -6.3270 -6.7788 43 1 3.2212 -5.6726 -4.4248 44 1 4.9565 -6.0923 -4.4253 45 1 5.5396 -3.7361 -4.9322 46 1 4.5558 -3.8142 -3.4508 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_15739364_15704118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:34:06 Heat of formation + Delta-G solvation = -45.147199 kcal Electronic energy + Delta-G solvation = -23601.300338 eV Core-core repulsion = 20353.814364 eV Total energy + Delta-G solvation = -3247.485973 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76372 -38.89575 -37.65623 -37.41229 -34.48747 -32.14022 -31.98626 -31.15716 -27.81241 -27.02140 -25.96853 -24.22075 -23.60510 -23.34884 -21.83191 -21.13102 -20.58984 -19.57484 -18.20531 -17.07678 -16.62447 -16.41284 -16.31729 -16.10484 -15.91385 -15.52920 -15.18308 -15.17462 -15.07866 -14.88218 -14.29587 -13.85020 -13.80217 -13.45230 -13.35357 -13.20691 -12.88829 -12.78371 -12.72280 -12.40131 -12.33885 -12.31531 -12.24305 -12.05578 -12.00584 -11.88442 -11.66556 -11.53243 -11.14293 -10.67775 -10.34756 -10.26071 -10.20680 -10.13739 -10.10541 -8.68503 0.02701 0.06089 0.71716 1.15986 1.40925 1.49627 1.72636 1.75537 1.81339 1.90705 2.10021 2.18353 2.56052 3.46979 3.66658 3.72129 3.93527 3.99019 3.99324 4.04303 4.15321 4.21337 4.30147 4.38641 4.42076 4.53323 4.58500 4.61681 4.70028 4.72970 4.78179 4.82805 4.85670 4.93916 5.01623 5.12023 5.14786 5.15616 5.17417 5.26253 5.31085 5.31755 5.36744 5.40319 5.46040 5.54682 5.90707 6.11273 6.52814 7.07412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.536 6.536 2 C -0.022 4.022 3 Si 0.900 3.100 4 H -0.238 1.238 5 H -0.231 1.231 6 H -0.237 1.237 7 C -0.309 4.309 8 C 0.123 3.877 9 N -0.549 5.549 10 C 0.334 3.666 11 N -0.691 5.691 12 C 0.151 3.849 13 C -0.117 4.117 14 C -0.401 4.401 15 Si 0.998 3.002 16 C -0.407 4.407 17 C -0.109 4.109 18 C -0.132 4.132 19 C -0.109 4.109 20 C -0.405 4.405 21 C -0.403 4.403 22 C -0.116 4.116 23 S 0.064 5.936 24 H 0.377 0.623 25 H 0.124 0.876 26 H 0.177 0.823 27 H 0.412 0.588 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.063 0.937 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.514 0.731 -2.409 2.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.341 6.341 2 C -0.136 4.136 3 Si 0.721 3.279 4 H -0.161 1.161 5 H -0.154 1.154 6 H -0.160 1.160 7 C -0.432 4.432 8 C -0.028 4.028 9 N -0.274 5.274 10 C -0.037 4.037 11 N -0.329 5.329 12 C 0.044 3.956 13 C -0.155 4.155 14 C -0.488 4.488 15 Si 1.192 2.808 16 C -0.494 4.494 17 C -0.147 4.147 18 C -0.170 4.170 19 C -0.146 4.146 20 C -0.491 4.491 21 C -0.490 4.490 22 C -0.155 4.155 23 S 0.313 5.687 24 H 0.224 0.776 25 H 0.142 0.858 26 H 0.194 0.806 27 H 0.249 0.751 28 H 0.110 0.890 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.082 0.918 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.296 1.558 -2.319 3.616 hybrid contribution -0.421 -0.496 -0.221 0.687 sum 1.875 1.062 -2.540 3.331 Atomic orbital electron populations 1.86522 1.17016 1.81566 1.48982 1.24036 0.84643 1.09337 0.95554 0.86251 0.81916 0.76187 0.83566 1.16126 1.15387 1.16011 1.25542 1.13434 0.99408 1.04775 1.21351 0.96886 0.92874 0.91693 1.66512 1.17152 1.33361 1.10363 1.23644 0.94830 0.92966 0.92305 1.44302 1.54379 1.14765 1.19471 1.21147 1.01344 0.81728 0.91344 1.21520 1.01968 0.99267 0.92769 1.26164 1.07769 1.09859 1.04997 0.79481 0.67659 0.66958 0.66748 1.26252 1.07246 1.15847 1.00022 1.21239 0.95531 1.01936 0.95960 1.21512 0.95620 0.97603 1.02257 1.21215 1.00836 0.96291 0.96281 1.26227 1.17748 1.03610 1.01556 1.26193 1.04773 0.97981 1.20009 1.21619 0.98151 0.93985 1.01741 1.84086 1.51912 1.14735 1.17930 0.77584 0.85840 0.80565 0.75071 0.88964 0.91097 0.91041 0.89972 0.90176 0.90709 0.90576 0.91887 0.92029 0.91665 0.92012 0.92069 0.91912 0.90848 0.90600 0.90162 0.90401 0.91845 0.91234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.24 12.87 -35.23 -0.45 -0.69 16 2 C -0.02 0.00 2.99 36.00 0.11 0.11 16 3 Si 0.90 -0.03 26.34 -169.99 -4.48 -4.51 16 4 H -0.24 -0.08 7.11 56.52 0.40 0.32 16 5 H -0.23 -0.19 7.11 56.52 0.40 0.21 16 6 H -0.24 -0.16 7.11 56.52 0.40 0.24 16 7 C -0.31 -0.37 5.74 -36.02 -0.21 -0.58 16 8 C 0.12 0.26 11.22 -19.14 -0.21 0.05 16 9 N -0.55 -1.77 9.91 -15.21 -0.15 -1.93 16 10 C 0.33 0.61 7.86 -87.69 -0.69 -0.08 16 11 N -0.69 0.18 5.19 -56.23 -0.29 -0.12 16 12 C 0.15 -0.08 2.14 -68.39 -0.15 -0.22 16 13 C -0.12 0.24 5.07 -26.46 -0.13 0.10 16 14 C -0.40 0.85 4.97 37.65 0.19 1.04 16 15 Si 1.00 -2.43 9.20 -169.99 -1.56 -3.99 16 16 C -0.41 0.50 4.97 37.65 0.19 0.69 16 17 C -0.11 0.10 5.64 -26.46 -0.15 -0.05 16 18 C -0.13 0.11 5.41 -27.18 -0.15 -0.03 16 19 C -0.11 0.12 5.62 -26.52 -0.15 -0.02 16 20 C -0.41 0.67 4.97 37.59 0.19 0.85 16 21 C -0.40 0.37 4.97 37.65 0.19 0.56 16 22 C -0.12 0.03 5.20 -26.48 -0.14 -0.11 16 23 S 0.06 0.06 20.57 -107.50 -2.21 -2.15 16 24 H 0.38 -0.93 8.70 45.56 0.40 -0.53 16 25 H 0.12 -0.13 7.96 -51.93 -0.41 -0.54 16 26 H 0.18 0.15 8.06 -52.49 -0.42 -0.27 16 27 H 0.41 -0.99 8.71 -40.82 -0.36 -1.34 16 28 H 0.09 0.10 7.51 -51.93 -0.39 -0.29 16 29 H 0.07 -0.21 7.72 -51.93 -0.40 -0.61 16 30 H 0.07 -0.14 8.13 -51.93 -0.42 -0.56 16 31 H 0.08 -0.20 7.98 -51.93 -0.41 -0.61 16 32 H 0.08 -0.14 7.98 -51.93 -0.41 -0.55 16 33 H 0.07 -0.09 7.98 -51.93 -0.41 -0.51 16 34 H 0.08 -0.08 7.98 -51.93 -0.41 -0.49 16 35 H 0.06 -0.09 7.71 -51.93 -0.40 -0.49 16 36 H 0.06 -0.03 8.14 -51.93 -0.42 -0.46 16 37 H 0.06 -0.05 7.88 -51.93 -0.41 -0.46 16 38 H 0.06 -0.06 8.14 -51.93 -0.42 -0.48 16 39 H 0.06 -0.05 8.14 -51.93 -0.42 -0.47 16 40 H 0.06 -0.11 7.71 -51.93 -0.40 -0.51 16 41 H 0.07 -0.14 7.98 -51.93 -0.41 -0.56 16 42 H 0.08 -0.10 7.98 -51.92 -0.41 -0.52 16 43 H 0.08 -0.01 7.98 -51.93 -0.41 -0.43 16 44 H 0.08 -0.08 7.98 -51.93 -0.41 -0.49 16 45 H 0.06 -0.08 7.72 -51.93 -0.40 -0.48 16 46 H 0.07 0.13 7.94 -51.93 -0.41 -0.28 16 LS Contribution 366.18 15.07 5.52 5.52 Total: 0.00 -4.56 366.18 -12.16 -16.72 By element: Atomic # 1 Polarization: -3.74 SS G_CDS: -7.41 Total: -11.15 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -1.12 Total: 2.29 kcal Atomic # 7 Polarization: -1.60 SS G_CDS: -0.44 Total: -2.04 kcal Atomic # 8 Polarization: -0.24 SS G_CDS: -0.45 Total: -0.69 kcal Atomic # 14 Polarization: -2.46 SS G_CDS: -6.04 Total: -8.50 kcal Atomic # 16 Polarization: 0.06 SS G_CDS: -2.21 Total: -2.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -4.56 -12.16 -16.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739364_15704118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.428 kcal (2) G-P(sol) polarization free energy of solvation -4.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds