Wall clock time and date at job start Thu Mar 4 2021 12:34:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42902 * 1 3 3 Si 1.86306 * 109.47037 * 2 1 4 4 H 1.48494 * 109.46788 * 299.99459 * 3 2 1 5 5 H 1.48493 * 109.47146 * 60.00013 * 3 2 1 6 6 H 1.48503 * 109.46592 * 179.97438 * 3 2 1 7 7 C 1.50696 * 109.47548 * 239.99603 * 2 1 3 8 8 C 1.33330 * 125.95135 * 300.00507 * 7 2 1 9 9 N 1.32120 * 114.57600 * 179.97438 * 8 7 2 10 10 C 1.29682 * 116.86966 * 0.02562 * 9 8 7 11 11 N 1.38607 * 124.95011 * 179.97438 * 10 9 8 12 12 C 1.46508 * 119.99929 * 0.02562 * 11 10 9 13 13 C 1.52552 * 109.00324 * 154.99985 * 12 11 10 14 14 C 1.53951 * 109.47681 * 197.93467 * 13 12 11 15 15 Si 1.86486 * 107.25545 * 301.81942 * 14 13 12 16 16 C 1.86546 * 110.13914 * 164.72743 * 15 14 13 17 17 C 1.53946 * 107.24854 * 76.06139 * 16 15 14 18 18 C 1.52570 * 109.46992 * 58.19567 * 17 16 15 19 19 C 1.52561 * 111.79219 * 282.70421 * 18 17 16 20 20 C 1.53836 * 109.54368 * 77.38876 * 19 18 17 21 21 C 1.86543 * 108.15585 * 44.37483 * 15 14 13 22 22 C 1.52544 * 109.00168 * 277.35058 * 12 11 10 23 23 S 1.70968 * 110.10118 * 0.23988 * 10 9 8 24 24 H 0.96696 * 113.99397 * 59.99917 * 1 2 3 25 25 H 1.09005 * 109.46920 * 119.99359 * 2 1 3 26 26 H 1.08001 * 122.71141 * 0.02562 * 8 7 2 27 27 H 0.97001 * 120.00336 * 180.02562 * 11 10 9 28 28 H 1.09002 * 108.92098 * 36.17656 * 12 11 10 29 29 H 1.09000 * 109.47146 * 77.93139 * 13 12 11 30 30 H 1.08999 * 109.47025 * 317.93557 * 13 12 11 31 31 H 1.09002 * 109.89961 * 182.38212 * 14 13 12 32 32 H 1.08998 * 109.89711 * 61.25667 * 14 13 12 33 33 H 1.08996 * 109.90227 * 316.62597 * 16 15 14 34 34 H 1.09000 * 109.96287 * 195.52751 * 16 15 14 35 35 H 1.08995 * 109.47579 * 298.19538 * 17 16 15 36 36 H 1.09001 * 109.46936 * 178.18985 * 17 16 15 37 37 H 1.09002 * 109.00533 * 43.27859 * 18 17 16 38 38 H 1.08998 * 109.00390 * 162.13620 * 18 17 16 39 39 H 1.08998 * 109.47230 * 197.29130 * 19 18 17 40 40 H 1.09001 * 109.47565 * 317.28547 * 19 18 17 41 41 H 1.08990 * 109.91660 * 182.31793 * 20 19 18 42 42 H 1.09008 * 109.93672 * 61.15388 * 20 19 18 43 43 H 1.09002 * 109.89950 * 75.05131 * 21 15 14 44 44 H 1.09001 * 109.89806 * 196.18079 * 21 15 14 45 45 H 1.08999 * 109.47335 * 282.05280 * 22 12 11 46 46 H 1.09007 * 109.47214 * 42.05940 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5551 2.4564 -1.2125 5 1 1.5550 2.4565 1.2124 6 1 3.5350 1.7564 0.0006 7 6 1.9314 -0.7105 -1.2303 8 6 1.6836 -1.9789 -1.5579 9 7 2.2378 -2.3722 -2.6909 10 6 2.9426 -1.4942 -3.3344 11 7 3.5960 -1.7256 -4.5347 12 6 3.5176 -3.0439 -5.1691 13 6 3.7454 -2.8876 -6.6694 14 6 3.2336 -4.1425 -7.3998 15 14 4.1554 -5.6046 -6.6996 16 6 3.2979 -7.1918 -7.1744 17 6 3.6306 -7.4660 -8.6522 18 6 5.1438 -7.5585 -8.8241 19 6 5.7992 -6.1808 -8.8229 20 6 5.8914 -5.6561 -7.3797 21 6 4.1982 -5.4299 -4.8429 22 6 4.5525 -3.9648 -4.5304 23 16 2.9544 -0.0117 -2.4829 24 1 -0.3932 0.4417 -0.7650 25 1 1.7923 -0.5138 0.8901 26 1 1.0779 -2.6318 -0.9469 27 1 4.1051 -1.0148 -4.9547 28 1 2.5231 -3.4579 -5.0023 29 1 4.8106 -2.7629 -6.8641 30 1 3.2053 -2.0120 -7.0295 31 1 3.4313 -4.0563 -8.4683 32 1 2.1639 -4.2614 -7.2279 33 1 2.2204 -7.0827 -7.0507 34 1 3.6613 -8.0110 -6.5540 35 1 3.2439 -6.6544 -9.2684 36 1 3.1720 -8.4059 -8.9595 37 1 5.5583 -8.1495 -8.0074 38 1 5.3640 -8.0554 -9.7688 39 1 6.8013 -6.2548 -9.2451 40 1 5.2021 -5.4938 -9.4226 41 1 6.3214 -4.6546 -7.3756 42 1 6.5055 -6.3270 -6.7788 43 1 3.2212 -5.6726 -4.4248 44 1 4.9565 -6.0923 -4.4253 45 1 5.5396 -3.7361 -4.9322 46 1 4.5558 -3.8142 -3.4508 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15739364_15704118.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:34:05 Heat of formation + Delta-G solvation = -36.659273 kcal Electronic energy + Delta-G solvation = -23600.932274 eV Core-core repulsion = 20353.814364 eV Total energy + Delta-G solvation = -3247.117909 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 326.135 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.84692 -38.88306 -37.66720 -37.31010 -34.47515 -32.04429 -31.86942 -31.21085 -27.75508 -26.97764 -25.98254 -24.26765 -23.49907 -23.24262 -21.79944 -21.03415 -20.64690 -19.61047 -18.24437 -17.08708 -16.64082 -16.34034 -16.31452 -16.08419 -15.90087 -15.53411 -15.22602 -15.09200 -15.02443 -14.81697 -14.33738 -13.77869 -13.69185 -13.36693 -13.24966 -13.13401 -12.86024 -12.76258 -12.63918 -12.38837 -12.35989 -12.29425 -12.16791 -11.94479 -11.91845 -11.89458 -11.56694 -11.43426 -11.16347 -10.73159 -10.30850 -10.21200 -10.18436 -10.12080 -10.07719 -8.73785 -0.06550 -0.01509 0.63550 1.14434 1.39635 1.47679 1.87818 1.88428 1.89969 1.97199 1.98006 2.20289 2.67772 3.51711 3.66938 3.76986 3.96100 4.03852 4.06616 4.13699 4.24027 4.30839 4.37347 4.50031 4.53964 4.61656 4.64663 4.66813 4.71075 4.80888 4.82385 4.86972 4.96393 5.03790 5.09212 5.16619 5.22872 5.23747 5.26837 5.30770 5.41162 5.43783 5.45449 5.50698 5.54061 5.66338 5.87085 6.17824 6.66175 7.01690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.547 6.547 2 C -0.019 4.019 3 Si 0.926 3.074 4 H -0.242 1.242 5 H -0.243 1.243 6 H -0.246 1.246 7 C -0.308 4.308 8 C 0.108 3.892 9 N -0.575 5.575 10 C 0.324 3.676 11 N -0.684 5.684 12 C 0.153 3.847 13 C -0.115 4.115 14 C -0.406 4.406 15 Si 1.057 2.943 16 C -0.422 4.422 17 C -0.113 4.113 18 C -0.135 4.135 19 C -0.112 4.112 20 C -0.412 4.412 21 C -0.417 4.417 22 C -0.114 4.114 23 S 0.075 5.925 24 H 0.388 0.612 25 H 0.133 0.867 26 H 0.183 0.817 27 H 0.423 0.577 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.927 1.453 -3.222 4.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.354 6.354 2 C -0.133 4.133 3 Si 0.748 3.252 4 H -0.165 1.165 5 H -0.166 1.166 6 H -0.170 1.170 7 C -0.431 4.431 8 C -0.042 4.042 9 N -0.301 5.301 10 C -0.047 4.047 11 N -0.324 5.324 12 C 0.047 3.953 13 C -0.153 4.153 14 C -0.493 4.493 15 Si 1.247 2.753 16 C -0.507 4.507 17 C -0.150 4.150 18 C -0.172 4.172 19 C -0.149 4.149 20 C -0.498 4.498 21 C -0.501 4.501 22 C -0.153 4.153 23 S 0.324 5.676 24 H 0.237 0.763 25 H 0.151 0.849 26 H 0.199 0.801 27 H 0.262 0.738 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.091 0.909 43 H 0.086 0.914 44 H 0.095 0.905 45 H 0.096 0.904 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.709 2.276 -3.135 4.728 hybrid contribution -0.562 -0.747 0.055 0.936 sum 2.148 1.529 -3.080 4.054 Atomic orbital electron populations 1.86494 1.17192 1.81872 1.49854 1.24105 0.84506 1.09323 0.95382 0.85886 0.80946 0.75677 0.82679 1.16532 1.16574 1.16987 1.25711 1.13088 0.99202 1.05074 1.21503 0.97422 0.93488 0.91829 1.66509 1.18131 1.34361 1.11118 1.23847 0.94834 0.93193 0.92825 1.44379 1.53923 1.15247 1.18803 1.21137 1.00238 0.81469 0.92498 1.21526 1.03129 0.99435 0.91170 1.26221 1.07616 1.09806 1.05654 0.78601 0.66656 0.65687 0.64347 1.26442 1.07488 1.16841 0.99933 1.21278 0.95554 1.01982 0.96199 1.21538 0.95629 0.97981 1.02098 1.21254 1.00802 0.96193 0.96700 1.26313 1.18183 1.04018 1.01265 1.26411 1.04027 0.97589 1.22100 1.21597 0.99010 0.94479 1.00195 1.83976 1.51804 1.14130 1.17673 0.76253 0.84929 0.80050 0.73820 0.90847 0.89419 0.90715 0.88908 0.90537 0.90836 0.91074 0.91033 0.92698 0.92040 0.92081 0.92373 0.90963 0.89989 0.90918 0.91367 0.90532 0.90438 0.93811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 -0.46 12.87 -148.98 -1.92 -2.37 16 2 C -0.02 0.00 2.99 71.23 0.21 0.21 16 3 Si 0.93 -0.10 26.34 68.60 1.81 1.71 16 4 H -0.24 -0.10 7.11 99.48 0.71 0.61 16 5 H -0.24 -0.41 7.11 99.48 0.71 0.29 16 6 H -0.25 -0.33 7.11 99.48 0.71 0.37 16 7 C -0.31 -0.87 5.74 24.57 0.14 -0.73 16 8 C 0.11 0.57 11.22 83.54 0.94 1.51 16 9 N -0.57 -4.43 9.91 -202.03 -2.00 -6.43 16 10 C 0.32 1.40 7.86 179.32 1.41 2.81 16 11 N -0.68 0.23 5.19 -331.82 -1.72 -1.49 16 12 C 0.15 -0.12 2.14 44.69 0.10 -0.02 16 13 C -0.11 0.59 5.07 30.77 0.16 0.74 16 14 C -0.41 2.11 4.97 72.30 0.36 2.47 16 15 Si 1.06 -5.42 9.20 68.60 0.63 -4.79 16 16 C -0.42 0.89 4.97 72.30 0.36 1.25 16 17 C -0.11 0.20 5.64 30.77 0.17 0.37 16 18 C -0.13 0.25 5.41 30.31 0.16 0.41 16 19 C -0.11 0.35 5.62 30.73 0.17 0.52 16 20 C -0.41 1.73 4.97 72.26 0.36 2.09 16 21 C -0.42 0.42 4.97 72.30 0.36 0.78 16 22 C -0.11 -0.01 5.20 30.76 0.16 0.15 16 23 S 0.08 0.17 20.57 -56.49 -1.16 -1.00 16 24 H 0.39 -1.92 8.70 -74.06 -0.64 -2.57 16 25 H 0.13 -0.29 7.96 -2.38 -0.02 -0.31 16 26 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 27 H 0.42 -2.22 8.71 -92.71 -0.81 -3.02 16 28 H 0.07 0.24 7.51 -2.39 -0.02 0.22 16 29 H 0.09 -0.71 7.72 -2.39 -0.02 -0.73 16 30 H 0.07 -0.39 8.13 -2.39 -0.02 -0.41 16 31 H 0.09 -0.62 7.98 -2.39 -0.02 -0.64 16 32 H 0.08 -0.30 7.98 -2.39 -0.02 -0.32 16 33 H 0.07 -0.14 7.98 -2.39 -0.02 -0.16 16 34 H 0.07 -0.09 7.98 -2.39 -0.02 -0.11 16 35 H 0.07 -0.25 7.71 -2.39 -0.02 -0.27 16 36 H 0.05 -0.03 8.14 -2.39 -0.02 -0.05 16 37 H 0.06 -0.08 7.88 -2.39 -0.02 -0.09 16 38 H 0.06 -0.11 8.14 -2.39 -0.02 -0.13 16 39 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 40 H 0.07 -0.36 7.71 -2.39 -0.02 -0.37 16 41 H 0.08 -0.46 7.98 -2.39 -0.02 -0.48 16 42 H 0.07 -0.23 7.98 -2.38 -0.02 -0.25 16 43 H 0.07 0.09 7.98 -2.39 -0.02 0.07 16 44 H 0.08 -0.08 7.98 -2.39 -0.02 -0.10 16 45 H 0.08 -0.23 7.72 -2.39 -0.02 -0.25 16 46 H 0.04 0.24 7.94 -2.38 -0.02 0.22 16 Total: 0.00 -10.90 366.18 0.96 -9.94 By element: Atomic # 1 Polarization: -8.39 SS G_CDS: 0.27 Total: -8.12 kcal Atomic # 6 Polarization: 7.50 SS G_CDS: 5.06 Total: 12.56 kcal Atomic # 7 Polarization: -4.20 SS G_CDS: -3.73 Total: -7.92 kcal Atomic # 8 Polarization: -0.46 SS G_CDS: -1.92 Total: -2.37 kcal Atomic # 14 Polarization: -5.52 SS G_CDS: 2.44 Total: -3.08 kcal Atomic # 16 Polarization: 0.17 SS G_CDS: -1.16 Total: -1.00 kcal Total: -10.90 0.96 -9.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739364_15704118.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.723 kcal (2) G-P(sol) polarization free energy of solvation -10.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds