Wall clock time and date at job start Thu Mar 4 2021 12:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33331 * 125.94787 * 2 1 4 4 C 1.50697 * 122.71178 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47168 * 330.00427 * 4 3 2 6 6 Si 1.86304 * 109.47098 * 210.00081 * 4 3 2 7 7 H 1.48492 * 109.47002 * 60.00338 * 6 4 3 8 8 H 1.48503 * 109.46848 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47159 * 300.00419 * 6 4 3 10 10 N 1.32122 * 114.57701 * 179.75281 * 3 2 1 11 11 C 1.29689 * 116.86397 * 0.47015 * 10 3 2 12 12 N 1.38607 * 124.94741 * 179.81421 * 11 10 3 13 13 C 1.46508 * 119.99929 * 179.72270 * 12 11 10 14 14 C 1.52552 * 109.00324 * 154.99985 * 13 12 11 15 15 C 1.53951 * 109.47681 * 197.93467 * 14 13 12 16 16 Si 1.86486 * 107.25545 * 301.81942 * 15 14 13 17 17 C 1.86546 * 110.13914 * 164.72743 * 16 15 14 18 18 C 1.53946 * 107.24854 * 76.06139 * 17 16 15 19 19 C 1.52570 * 109.46992 * 58.19567 * 18 17 16 20 20 C 1.52561 * 111.79219 * 282.70421 * 19 18 17 21 21 C 1.53836 * 109.54368 * 77.38876 * 20 19 18 22 22 C 1.86543 * 108.15585 * 44.37483 * 16 15 14 23 23 C 1.52544 * 109.00168 * 277.35058 * 13 12 11 24 24 S 1.70965 * 110.10126 * 359.55040 * 11 10 3 25 25 H 1.08998 * 109.46648 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46902 * 299.97838 * 1 2 3 27 27 H 1.09001 * 109.47038 * 59.97425 * 1 2 3 28 28 H 1.09001 * 109.46683 * 90.00421 * 4 3 2 29 29 H 0.96703 * 113.99963 * 299.99626 * 5 4 3 30 30 H 0.97001 * 120.00336 * 359.71963 * 12 11 10 31 31 H 1.09002 * 108.92098 * 36.17656 * 13 12 11 32 32 H 1.09000 * 109.47146 * 77.93139 * 14 13 12 33 33 H 1.08999 * 109.47025 * 317.93557 * 14 13 12 34 34 H 1.09002 * 109.89961 * 182.38212 * 15 14 13 35 35 H 1.08998 * 109.89711 * 61.25667 * 15 14 13 36 36 H 1.08996 * 109.90227 * 316.62597 * 17 16 15 37 37 H 1.09000 * 109.96287 * 195.52751 * 17 16 15 38 38 H 1.08995 * 109.47579 * 298.19538 * 18 17 16 39 39 H 1.09001 * 109.46936 * 178.18985 * 18 17 16 40 40 H 1.09002 * 109.00533 * 43.27859 * 19 18 17 41 41 H 1.08998 * 109.00390 * 162.13620 * 19 18 17 42 42 H 1.08998 * 109.47230 * 197.29130 * 20 19 18 43 43 H 1.09001 * 109.47565 * 317.28547 * 20 19 18 44 44 H 1.08990 * 109.91660 * 182.31793 * 21 20 19 45 45 H 1.09008 * 109.93672 * 61.15388 * 21 20 19 46 46 H 1.09002 * 109.89950 * 75.05131 * 22 16 15 47 47 H 1.09001 * 109.89806 * 196.18079 * 22 16 15 48 48 H 1.08999 * 109.47335 * 282.05280 * 23 13 12 49 49 H 1.09007 * 109.47214 * 42.05940 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 0.4815 2.5019 -0.6746 6 14 2.9325 3.6148 -0.8787 7 1 3.1131 3.1534 -2.2785 8 1 2.3924 4.9981 -0.8787 9 1 4.2418 3.5951 -0.1783 10 7 3.5850 0.8189 0.0052 11 6 3.9315 -0.4308 0.0001 12 7 5.2384 -0.8925 0.0005 13 6 5.5066 -2.3328 0.0005 14 6 6.8829 -2.5818 -0.6086 15 6 6.9987 -4.0583 -1.0288 16 14 6.7099 -5.0918 0.4964 17 6 6.3728 -6.8630 0.0176 18 6 7.7216 -7.4957 -0.3701 19 6 8.6879 -7.3939 0.8062 20 6 9.2666 -5.9890 0.9438 21 6 8.2214 -5.0627 1.5887 22 6 5.2445 -4.3847 1.4088 23 6 5.4155 -2.8550 1.4309 24 16 2.5413 -1.4260 0.0001 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 1.6089 2.8217 1.0270 29 1 0.5240 2.2119 -1.5961 30 1 5.9756 -0.2619 0.0008 31 1 4.7532 -2.8326 -0.6085 32 1 7.6530 -2.3521 0.1278 33 1 7.0142 -1.9440 -1.4826 34 1 7.9946 -4.2539 -1.4264 35 1 6.2456 -4.2898 -1.7820 36 1 5.6905 -6.8944 -0.8318 37 1 5.9397 -7.4006 0.8612 38 1 8.1372 -6.9680 -1.2284 39 1 7.5707 -8.5444 -0.6264 40 1 8.1586 -7.6511 1.7237 41 1 9.5040 -8.1009 0.6574 42 1 10.1565 -6.0225 1.5723 43 1 9.5325 -5.6074 -0.0420 44 1 8.6136 -4.0478 1.6524 45 1 7.9666 -5.4261 2.5844 46 1 4.3225 -4.6475 0.8903 47 1 5.2209 -4.7702 2.4281 48 1 6.3277 -2.5991 1.9699 49 1 4.5592 -2.4009 1.9297 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_15739364_15704122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:34:19 Heat of formation + Delta-G solvation = -48.964421 kcal Electronic energy + Delta-G solvation = -25764.577400 eV Core-core repulsion = 22361.388280 eV Total energy + Delta-G solvation = -3403.189120 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.98467 -39.29993 -37.55408 -37.45587 -34.61431 -32.38109 -32.27607 -32.03103 -29.32651 -27.60042 -26.48083 -25.41826 -24.24812 -23.52814 -23.39792 -21.91795 -21.18043 -20.38840 -19.06175 -17.94850 -17.27874 -16.74347 -16.52829 -16.46117 -16.12353 -15.76038 -15.55122 -15.25047 -15.18832 -14.95654 -14.63879 -14.14181 -13.94292 -13.80256 -13.74920 -13.56339 -13.40812 -13.40060 -13.28470 -12.96565 -12.81889 -12.59112 -12.49395 -12.36044 -12.31589 -12.10794 -12.07089 -11.96770 -11.72262 -11.70229 -11.58177 -11.00992 -10.52753 -10.42715 -10.36253 -10.26605 -10.23210 -9.90234 -8.54665 0.10172 0.25953 0.86006 1.31409 1.62943 1.66343 1.68059 1.69961 1.78532 1.95210 1.98058 2.25346 2.46976 3.41529 3.48529 3.60803 3.80238 3.89033 3.93660 3.99695 4.13541 4.16702 4.23833 4.30296 4.33166 4.41094 4.44025 4.47786 4.56200 4.61395 4.65502 4.67343 4.80389 4.86885 4.88437 4.92629 4.94335 5.00429 5.07142 5.10617 5.11625 5.13176 5.19677 5.25088 5.26854 5.34044 5.35077 5.37233 5.49004 5.67487 6.33030 6.51865 7.03299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.242 4.242 3 C 0.064 3.936 4 C -0.046 4.046 5 O -0.534 6.534 6 Si 0.983 3.017 7 H -0.261 1.261 8 H -0.263 1.263 9 H -0.246 1.246 10 N -0.550 5.550 11 C 0.321 3.679 12 N -0.692 5.692 13 C 0.143 3.857 14 C -0.114 4.114 15 C -0.403 4.403 16 Si 0.997 3.003 17 C -0.407 4.407 18 C -0.109 4.109 19 C -0.133 4.133 20 C -0.109 4.109 21 C -0.405 4.405 22 C -0.406 4.406 23 C -0.126 4.126 24 S 0.101 5.899 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.124 0.876 29 H 0.376 0.624 30 H 0.411 0.589 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.073 0.927 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.352 -3.536 -0.598 3.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.364 4.364 3 C -0.067 4.067 4 C -0.159 4.159 5 O -0.339 6.339 6 Si 0.805 3.195 7 H -0.185 1.185 8 H -0.187 1.187 9 H -0.170 1.170 10 N -0.277 5.277 11 C -0.051 4.051 12 N -0.332 5.332 13 C 0.038 3.962 14 C -0.152 4.152 15 C -0.490 4.490 16 Si 1.191 2.809 17 C -0.493 4.493 18 C -0.147 4.147 19 C -0.170 4.170 20 C -0.147 4.147 21 C -0.492 4.492 22 C -0.492 4.492 23 C -0.165 4.165 24 S 0.350 5.650 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.141 0.859 29 H 0.223 0.777 30 H 0.249 0.751 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.103 0.897 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.095 0.905 38 H 0.081 0.919 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.095 0.905 46 H 0.098 0.902 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.006 -3.651 -0.446 4.190 hybrid contribution 0.044 0.444 -0.153 0.472 sum 2.049 -3.207 -0.599 3.853 Atomic orbital electron populations 1.20146 0.86360 1.01588 1.03729 1.25142 1.01324 0.92805 1.17165 1.20122 0.86814 0.97259 1.02479 1.24465 0.92481 0.95305 1.03645 1.86532 1.28942 1.89536 1.28858 0.85136 0.78075 0.76830 0.79473 1.18482 1.18697 1.16952 1.65971 1.17273 1.16779 1.27648 1.23276 0.91923 0.91434 0.98426 1.44171 1.01719 1.07101 1.80231 1.21264 0.98917 0.78790 0.97214 1.21470 0.94801 0.97617 1.01332 1.26193 1.05739 1.02450 1.14569 0.79489 0.67197 0.66926 0.67300 1.26247 0.99790 1.17937 1.05351 1.21239 0.94508 1.01144 0.97796 1.21514 0.99115 0.97252 0.99132 1.21216 0.98175 0.94524 1.00738 1.26224 1.12596 1.02004 1.08332 1.26227 1.14372 0.99570 1.09080 1.21773 1.03259 0.95728 0.95770 1.83995 0.96474 1.10513 1.74014 0.92437 0.90537 0.90029 0.85879 0.77656 0.75063 0.89954 0.90695 0.90653 0.89705 0.90135 0.90696 0.90518 0.91864 0.91975 0.91647 0.91971 0.92008 0.91893 0.90787 0.90542 0.90220 0.89877 0.90901 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.02 8.91 36.01 0.32 0.30 16 2 C -0.24 -0.51 6.50 -36.02 -0.23 -0.75 16 3 C 0.06 0.19 5.91 -84.18 -0.50 -0.31 16 4 C -0.05 -0.06 2.94 36.00 0.11 0.04 16 5 O -0.53 -0.25 10.17 -35.23 -0.36 -0.61 16 6 Si 0.98 1.84 27.37 -169.99 -4.65 -2.81 16 7 H -0.26 -0.73 7.11 56.52 0.40 -0.33 16 8 H -0.26 -0.64 7.11 56.52 0.40 -0.24 16 9 H -0.25 -0.87 7.11 56.52 0.40 -0.47 16 10 N -0.55 -2.15 8.95 -11.36 -0.10 -2.25 16 11 C 0.32 0.78 8.02 -87.68 -0.70 0.08 16 12 N -0.69 -0.14 5.19 -56.23 -0.29 -0.43 16 13 C 0.14 -0.21 1.95 -68.39 -0.13 -0.35 16 14 C -0.11 0.30 5.07 -26.46 -0.13 0.16 16 15 C -0.40 1.21 4.97 37.65 0.19 1.39 16 16 Si 1.00 -3.40 9.20 -169.99 -1.56 -4.96 16 17 C -0.41 0.88 4.97 37.65 0.19 1.07 16 18 C -0.11 0.17 5.64 -26.46 -0.15 0.02 16 19 C -0.13 0.19 5.41 -27.18 -0.15 0.04 16 20 C -0.11 0.18 5.62 -26.52 -0.15 0.03 16 21 C -0.41 0.93 4.97 37.59 0.19 1.11 16 22 C -0.41 1.00 4.97 37.65 0.19 1.18 16 23 C -0.13 0.19 5.20 -26.48 -0.14 0.06 16 24 S 0.10 0.15 21.61 -107.50 -2.32 -2.18 16 25 H 0.06 -0.02 8.14 -51.93 -0.42 -0.44 16 26 H 0.08 0.05 8.14 -51.93 -0.42 -0.38 16 27 H 0.08 -0.06 6.39 -51.93 -0.33 -0.39 16 28 H 0.12 0.07 7.96 -51.93 -0.41 -0.34 16 29 H 0.38 -0.87 8.13 45.56 0.37 -0.50 16 30 H 0.41 -0.23 8.71 -40.82 -0.36 -0.59 16 31 H 0.08 -0.11 7.01 -51.93 -0.36 -0.47 16 32 H 0.07 -0.25 7.72 -51.93 -0.40 -0.65 16 33 H 0.07 -0.16 8.13 -51.93 -0.42 -0.59 16 34 H 0.08 -0.26 7.98 -51.93 -0.41 -0.68 16 35 H 0.08 -0.24 7.98 -51.93 -0.41 -0.65 16 36 H 0.07 -0.17 7.98 -51.93 -0.41 -0.59 16 37 H 0.08 -0.15 7.98 -51.93 -0.41 -0.57 16 38 H 0.06 -0.13 7.71 -51.93 -0.40 -0.53 16 39 H 0.06 -0.07 8.14 -51.93 -0.42 -0.50 16 40 H 0.06 -0.09 7.88 -51.93 -0.41 -0.50 16 41 H 0.06 -0.08 8.14 -51.93 -0.42 -0.51 16 42 H 0.06 -0.07 8.14 -51.93 -0.42 -0.50 16 43 H 0.06 -0.14 7.71 -51.93 -0.40 -0.54 16 44 H 0.07 -0.18 7.98 -51.93 -0.41 -0.60 16 45 H 0.08 -0.15 7.98 -51.92 -0.41 -0.57 16 46 H 0.08 -0.20 7.98 -51.93 -0.41 -0.61 16 47 H 0.08 -0.21 7.98 -51.93 -0.41 -0.62 16 48 H 0.07 -0.15 7.72 -51.93 -0.40 -0.55 16 49 H 0.07 0.00 7.75 -51.93 -0.40 -0.40 16 LS Contribution 382.24 15.07 5.76 5.76 Total: 0.00 -4.88 382.24 -12.80 -17.67 By element: Atomic # 1 Polarization: -6.13 SS G_CDS: -8.16 Total: -14.29 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -1.11 Total: 4.10 kcal Atomic # 7 Polarization: -2.29 SS G_CDS: -0.39 Total: -2.68 kcal Atomic # 8 Polarization: -0.25 SS G_CDS: -0.36 Total: -0.61 kcal Atomic # 14 Polarization: -1.56 SS G_CDS: -6.22 Total: -7.78 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -2.32 Total: -2.18 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -4.88 -12.80 -17.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739364_15704122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.290 kcal (2) G-P(sol) polarization free energy of solvation -4.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds