Wall clock time and date at job start Thu Mar 4 2021 12:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33331 * 125.94787 * 2 1 4 4 C 1.50697 * 122.71178 * 359.97438 * 3 2 1 5 5 O 1.42898 * 109.47168 * 330.00427 * 4 3 2 6 6 Si 1.86304 * 109.47098 * 210.00081 * 4 3 2 7 7 H 1.48492 * 109.47002 * 60.00338 * 6 4 3 8 8 H 1.48503 * 109.46848 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47159 * 300.00419 * 6 4 3 10 10 N 1.32122 * 114.57701 * 179.75281 * 3 2 1 11 11 C 1.29689 * 116.86397 * 0.47015 * 10 3 2 12 12 N 1.38607 * 124.94741 * 179.81421 * 11 10 3 13 13 C 1.46508 * 119.99929 * 179.72270 * 12 11 10 14 14 C 1.52552 * 109.00324 * 154.99985 * 13 12 11 15 15 C 1.53951 * 109.47681 * 197.93467 * 14 13 12 16 16 Si 1.86486 * 107.25545 * 301.81942 * 15 14 13 17 17 C 1.86546 * 110.13914 * 164.72743 * 16 15 14 18 18 C 1.53946 * 107.24854 * 76.06139 * 17 16 15 19 19 C 1.52570 * 109.46992 * 58.19567 * 18 17 16 20 20 C 1.52561 * 111.79219 * 282.70421 * 19 18 17 21 21 C 1.53836 * 109.54368 * 77.38876 * 20 19 18 22 22 C 1.86543 * 108.15585 * 44.37483 * 16 15 14 23 23 C 1.52544 * 109.00168 * 277.35058 * 13 12 11 24 24 S 1.70965 * 110.10126 * 359.55040 * 11 10 3 25 25 H 1.08998 * 109.46648 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.46902 * 299.97838 * 1 2 3 27 27 H 1.09001 * 109.47038 * 59.97425 * 1 2 3 28 28 H 1.09001 * 109.46683 * 90.00421 * 4 3 2 29 29 H 0.96703 * 113.99963 * 299.99626 * 5 4 3 30 30 H 0.97001 * 120.00336 * 359.71963 * 12 11 10 31 31 H 1.09002 * 108.92098 * 36.17656 * 13 12 11 32 32 H 1.09000 * 109.47146 * 77.93139 * 14 13 12 33 33 H 1.08999 * 109.47025 * 317.93557 * 14 13 12 34 34 H 1.09002 * 109.89961 * 182.38212 * 15 14 13 35 35 H 1.08998 * 109.89711 * 61.25667 * 15 14 13 36 36 H 1.08996 * 109.90227 * 316.62597 * 17 16 15 37 37 H 1.09000 * 109.96287 * 195.52751 * 17 16 15 38 38 H 1.08995 * 109.47579 * 298.19538 * 18 17 16 39 39 H 1.09001 * 109.46936 * 178.18985 * 18 17 16 40 40 H 1.09002 * 109.00533 * 43.27859 * 19 18 17 41 41 H 1.08998 * 109.00390 * 162.13620 * 19 18 17 42 42 H 1.08998 * 109.47230 * 197.29130 * 20 19 18 43 43 H 1.09001 * 109.47565 * 317.28547 * 20 19 18 44 44 H 1.08990 * 109.91660 * 182.31793 * 21 20 19 45 45 H 1.09008 * 109.93672 * 61.15388 * 21 20 19 46 46 H 1.09002 * 109.89950 * 75.05131 * 22 16 15 47 47 H 1.09001 * 109.89806 * 196.18079 * 22 16 15 48 48 H 1.08999 * 109.47335 * 282.05280 * 23 13 12 49 49 H 1.09007 * 109.47214 * 42.05940 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2897 1.0794 0.0000 4 6 1.7414 2.4830 -0.0006 5 8 0.4815 2.5019 -0.6746 6 14 2.9325 3.6148 -0.8787 7 1 3.1131 3.1534 -2.2785 8 1 2.3924 4.9981 -0.8787 9 1 4.2418 3.5951 -0.1783 10 7 3.5850 0.8189 0.0052 11 6 3.9315 -0.4308 0.0001 12 7 5.2384 -0.8925 0.0005 13 6 5.5066 -2.3328 0.0005 14 6 6.8829 -2.5818 -0.6086 15 6 6.9987 -4.0583 -1.0288 16 14 6.7099 -5.0918 0.4964 17 6 6.3728 -6.8630 0.0176 18 6 7.7216 -7.4957 -0.3701 19 6 8.6879 -7.3939 0.8062 20 6 9.2666 -5.9890 0.9438 21 6 8.2214 -5.0627 1.5887 22 6 5.2445 -4.3847 1.4088 23 6 5.4155 -2.8550 1.4309 24 16 2.5413 -1.4260 0.0001 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5135 0.8902 27 1 -0.3633 0.5142 -0.8898 28 1 1.6089 2.8217 1.0270 29 1 0.5240 2.2119 -1.5961 30 1 5.9756 -0.2619 0.0008 31 1 4.7532 -2.8326 -0.6085 32 1 7.6530 -2.3521 0.1278 33 1 7.0142 -1.9440 -1.4826 34 1 7.9946 -4.2539 -1.4264 35 1 6.2456 -4.2898 -1.7820 36 1 5.6905 -6.8944 -0.8318 37 1 5.9397 -7.4006 0.8612 38 1 8.1372 -6.9680 -1.2284 39 1 7.5707 -8.5444 -0.6264 40 1 8.1586 -7.6511 1.7237 41 1 9.5040 -8.1009 0.6574 42 1 10.1565 -6.0225 1.5723 43 1 9.5325 -5.6074 -0.0420 44 1 8.6136 -4.0478 1.6524 45 1 7.9666 -5.4261 2.5844 46 1 4.3225 -4.6475 0.8903 47 1 5.2209 -4.7702 2.4281 48 1 6.3277 -2.5991 1.9699 49 1 4.5592 -2.4009 1.9297 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15739364_15704122.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:34:18 Heat of formation + Delta-G solvation = -39.417691 kcal Electronic energy + Delta-G solvation = -25764.163422 eV Core-core repulsion = 22361.388280 eV Total energy + Delta-G solvation = -3402.775142 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 340.151 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.09324 -39.23841 -37.58330 -37.31124 -34.59186 -32.40934 -32.08926 -31.85996 -29.38010 -27.45337 -26.38101 -25.47886 -24.24901 -23.39555 -23.24317 -21.82849 -21.03458 -20.42418 -19.14016 -18.00959 -17.32667 -16.71230 -16.56943 -16.33383 -16.01677 -15.88721 -15.49647 -15.10849 -15.07282 -14.86868 -14.78410 -14.06374 -13.86564 -13.74159 -13.68336 -13.42066 -13.40402 -13.25285 -13.14753 -12.83212 -12.71953 -12.57792 -12.41416 -12.29742 -12.21831 -12.16389 -12.00533 -11.93477 -11.79073 -11.57736 -11.43000 -11.02783 -10.64779 -10.39301 -10.22073 -10.15089 -10.08051 -10.00762 -8.62092 -0.01962 0.16003 0.74729 1.18108 1.48517 1.59922 1.80593 1.85426 1.87989 1.93105 2.00507 2.08455 2.67011 3.39639 3.54467 3.64601 3.93678 4.03872 4.08256 4.13934 4.19231 4.30361 4.32791 4.36106 4.49997 4.50888 4.56149 4.60039 4.64535 4.72535 4.78953 4.83065 4.87956 4.90752 4.95992 5.03685 5.10058 5.15128 5.17073 5.20615 5.23386 5.28158 5.34715 5.40807 5.41434 5.43996 5.50960 5.54023 5.63860 5.71084 6.31653 6.60268 6.93578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.250 4.250 3 C 0.048 3.952 4 C -0.038 4.038 5 O -0.537 6.537 6 Si 1.015 2.985 7 H -0.275 1.275 8 H -0.269 1.269 9 H -0.273 1.273 10 N -0.578 5.578 11 C 0.309 3.691 12 N -0.688 5.688 13 C 0.142 3.858 14 C -0.113 4.113 15 C -0.409 4.409 16 Si 1.056 2.944 17 C -0.420 4.420 18 C -0.114 4.114 19 C -0.135 4.135 20 C -0.113 4.113 21 C -0.416 4.416 22 C -0.415 4.415 23 C -0.126 4.126 24 S 0.116 5.884 25 H 0.063 0.937 26 H 0.074 0.926 27 H 0.092 0.908 28 H 0.130 0.870 29 H 0.388 0.612 30 H 0.414 0.586 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.122 -3.888 -0.882 4.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.373 4.373 3 C -0.082 4.082 4 C -0.151 4.151 5 O -0.343 6.343 6 Si 0.841 3.159 7 H -0.200 1.200 8 H -0.194 1.194 9 H -0.198 1.198 10 N -0.306 5.306 11 C -0.062 4.062 12 N -0.328 5.328 13 C 0.038 3.962 14 C -0.151 4.151 15 C -0.495 4.495 16 Si 1.246 2.754 17 C -0.505 4.505 18 C -0.151 4.151 19 C -0.172 4.172 20 C -0.150 4.150 21 C -0.502 4.502 22 C -0.501 4.501 23 C -0.165 4.165 24 S 0.365 5.635 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.111 0.889 28 H 0.147 0.853 29 H 0.237 0.763 30 H 0.252 0.748 31 H 0.099 0.901 32 H 0.103 0.897 33 H 0.091 0.909 34 H 0.109 0.891 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.073 0.927 43 H 0.089 0.911 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.099 0.901 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.776 -4.019 -0.734 4.455 hybrid contribution 0.152 0.510 -0.065 0.536 sum 1.928 -3.510 -0.799 4.083 Atomic orbital electron populations 1.20192 0.85183 1.02156 1.04111 1.25425 1.02226 0.92871 1.16781 1.20343 0.86770 0.98064 1.03015 1.24350 0.92437 0.94394 1.03932 1.86506 1.28324 1.89543 1.29904 0.84679 0.76725 0.76381 0.78165 1.19969 1.19389 1.19799 1.65991 1.18016 1.17678 1.28880 1.23541 0.92921 0.91486 0.98289 1.44342 1.01124 1.07871 1.79448 1.21391 0.99646 0.77807 0.97351 1.21481 0.94241 0.97923 1.01461 1.26273 1.06224 1.02064 1.14929 0.78605 0.65433 0.65265 0.66054 1.26418 0.99518 1.19112 1.05445 1.21280 0.94867 1.00978 0.97978 1.21536 0.99091 0.97467 0.99141 1.21254 0.98138 0.94510 1.01123 1.26377 1.13213 1.02034 1.08553 1.26374 1.15257 0.98913 1.09522 1.21765 1.02889 0.96264 0.95569 1.83858 0.95815 1.09997 1.73801 0.91776 0.90782 0.88924 0.85257 0.76254 0.74795 0.90068 0.89654 0.90897 0.89095 0.89906 0.90419 0.90813 0.91152 0.92646 0.91918 0.92269 0.92661 0.91133 0.90369 0.90860 0.90118 0.89761 0.90225 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.00 8.91 71.24 0.63 0.63 16 2 C -0.25 -1.07 6.50 24.58 0.16 -0.91 16 3 C 0.05 0.30 5.91 41.40 0.24 0.54 16 4 C -0.04 -0.11 2.94 71.23 0.21 0.10 16 5 O -0.54 -0.26 10.17 -148.98 -1.52 -1.77 16 6 Si 1.02 4.65 27.37 68.60 1.88 6.53 16 7 H -0.27 -1.80 7.11 99.48 0.71 -1.10 16 8 H -0.27 -1.43 7.11 99.48 0.71 -0.72 16 9 H -0.27 -2.41 7.11 99.48 0.71 -1.70 16 10 N -0.58 -5.00 8.95 -189.86 -1.70 -6.70 16 11 C 0.31 1.69 8.02 179.32 1.44 3.12 16 12 N -0.69 -0.53 5.19 -331.82 -1.72 -2.25 16 13 C 0.14 -0.45 1.95 44.69 0.09 -0.36 16 14 C -0.11 0.66 5.07 30.77 0.16 0.82 16 15 C -0.41 2.86 4.97 72.30 0.36 3.22 16 16 Si 1.06 -7.87 9.20 68.60 0.63 -7.24 16 17 C -0.42 1.96 4.97 72.30 0.36 2.32 16 18 C -0.11 0.37 5.64 30.77 0.17 0.54 16 19 C -0.13 0.36 5.41 30.31 0.16 0.53 16 20 C -0.11 0.40 5.62 30.73 0.17 0.57 16 21 C -0.42 2.10 4.97 72.26 0.36 2.46 16 22 C -0.42 2.18 4.97 72.30 0.36 2.54 16 23 C -0.13 0.39 5.20 30.76 0.16 0.55 16 24 S 0.12 0.36 21.61 -56.49 -1.22 -0.86 16 25 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 26 H 0.07 0.06 8.14 -2.38 -0.02 0.04 16 27 H 0.09 -0.22 6.39 -2.39 -0.02 -0.24 16 28 H 0.13 0.17 7.96 -2.39 -0.02 0.15 16 29 H 0.39 -2.01 8.13 -74.06 -0.60 -2.61 16 30 H 0.41 -0.26 8.71 -92.71 -0.81 -1.07 16 31 H 0.08 -0.23 7.01 -2.39 -0.02 -0.24 16 32 H 0.08 -0.67 7.72 -2.39 -0.02 -0.68 16 33 H 0.07 -0.36 8.13 -2.39 -0.02 -0.38 16 34 H 0.09 -0.70 7.98 -2.39 -0.02 -0.71 16 35 H 0.08 -0.58 7.98 -2.39 -0.02 -0.60 16 36 H 0.08 -0.40 7.98 -2.39 -0.02 -0.42 16 37 H 0.07 -0.29 7.98 -2.39 -0.02 -0.31 16 38 H 0.07 -0.33 7.71 -2.39 -0.02 -0.35 16 39 H 0.05 -0.11 8.14 -2.39 -0.02 -0.13 16 40 H 0.06 -0.15 7.88 -2.39 -0.02 -0.17 16 41 H 0.06 -0.13 8.14 -2.39 -0.02 -0.15 16 42 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 43 H 0.07 -0.36 7.71 -2.39 -0.02 -0.38 16 44 H 0.08 -0.45 7.98 -2.39 -0.02 -0.47 16 45 H 0.07 -0.31 7.98 -2.38 -0.02 -0.33 16 46 H 0.08 -0.42 7.98 -2.39 -0.02 -0.44 16 47 H 0.08 -0.44 7.98 -2.39 -0.02 -0.46 16 48 H 0.08 -0.37 7.72 -2.39 -0.02 -0.38 16 49 H 0.05 0.03 7.75 -2.38 -0.02 0.01 16 Total: 0.00 -11.38 382.24 1.67 -9.71 By element: Atomic # 1 Polarization: -14.38 SS G_CDS: 0.28 Total: -14.10 kcal Atomic # 6 Polarization: 11.65 SS G_CDS: 5.04 Total: 16.68 kcal Atomic # 7 Polarization: -5.53 SS G_CDS: -3.42 Total: -8.95 kcal Atomic # 8 Polarization: -0.26 SS G_CDS: -1.52 Total: -1.77 kcal Atomic # 14 Polarization: -3.22 SS G_CDS: 2.51 Total: -0.71 kcal Atomic # 16 Polarization: 0.36 SS G_CDS: -1.22 Total: -0.86 kcal Total: -11.38 1.67 -9.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739364_15704122.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.707 kcal (2) G-P(sol) polarization free energy of solvation -11.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -9.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds