Wall clock time and date at job start Thu Mar 4 2021 12:37:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42904 * 1 3 3 Si 1.86297 * 109.47099 * 2 1 4 4 H 1.48507 * 109.47081 * 299.99921 * 3 2 1 5 5 H 1.48506 * 109.47130 * 59.99518 * 3 2 1 6 6 H 1.48501 * 109.47403 * 179.97438 * 3 2 1 7 7 C 1.50699 * 109.47066 * 239.99844 * 2 1 3 8 8 C 1.38861 * 120.32996 * 300.01701 * 7 2 1 9 9 C 1.38483 * 118.48403 * 179.72861 * 8 7 2 10 10 F 1.35099 * 120.46793 * 180.26833 * 9 8 7 11 11 C 1.39299 * 119.06066 * 0.47553 * 9 8 7 12 12 N 1.39151 * 119.71858 * 179.79033 * 11 9 8 13 13 C 1.46497 * 119.99746 * 179.72727 * 12 11 9 14 14 C 1.52553 * 108.99296 * 205.00234 * 13 12 11 15 15 C 1.53961 * 109.47306 * 162.08677 * 14 13 12 16 16 Si 1.86525 * 107.22835 * 58.20859 * 15 14 13 17 17 C 1.86519 * 110.13125 * 75.93026 * 16 15 14 18 18 C 1.53960 * 107.22536 * 75.92859 * 17 16 15 19 19 C 1.52554 * 109.47390 * 58.21056 * 18 17 16 20 20 C 1.52554 * 111.83887 * 282.74859 * 19 18 17 21 21 C 1.53835 * 109.54429 * 77.33395 * 20 19 18 22 22 C 1.86518 * 108.14467 * 315.53238 * 16 15 14 23 23 C 1.52550 * 108.99404 * 82.61382 * 13 12 11 24 24 N 1.32368 * 120.56300 * 359.52029 * 11 9 8 25 25 C 1.31977 * 121.64735 * 0.25005 * 24 11 9 26 26 H 0.96699 * 113.99970 * 60.00602 * 1 2 3 27 27 H 1.08999 * 109.46927 * 119.99621 * 2 1 3 28 28 H 1.08004 * 120.75442 * 359.97438 * 8 7 2 29 29 H 0.97001 * 120.00099 * 359.73420 * 12 11 9 30 30 H 1.09002 * 108.98468 * 323.84411 * 13 12 11 31 31 H 1.09004 * 109.47423 * 42.08804 * 14 13 12 32 32 H 1.09004 * 109.47330 * 282.08620 * 14 13 12 33 33 H 1.09009 * 109.90250 * 298.78124 * 15 14 13 34 34 H 1.08995 * 109.90741 * 177.64109 * 15 14 13 35 35 H 1.08994 * 109.90496 * 316.50211 * 17 16 15 36 36 H 1.08999 * 109.90221 * 195.35583 * 17 16 15 37 37 H 1.08999 * 109.47427 * 298.21044 * 18 17 16 38 38 H 1.09001 * 109.46931 * 178.20824 * 18 17 16 39 39 H 1.09002 * 108.99526 * 43.33193 * 19 18 17 40 40 H 1.09001 * 108.99706 * 162.16560 * 19 18 17 41 41 H 1.08994 * 109.47726 * 197.24291 * 20 19 18 42 42 H 1.09003 * 109.46650 * 317.23929 * 20 19 18 43 43 H 1.08997 * 109.91671 * 182.32064 * 21 20 19 44 44 H 1.09005 * 109.93752 * 61.15488 * 21 20 19 45 45 H 1.09000 * 109.89815 * 163.89172 * 22 16 15 46 46 H 1.08997 * 109.90440 * 285.02429 * 22 16 15 47 47 H 1.08996 * 109.46695 * 317.89836 * 23 13 12 48 48 H 1.09000 * 109.46868 * 77.90042 * 23 13 12 49 49 H 1.07997 * 119.55054 * 179.97438 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 1 1.5550 2.4565 -1.2126 5 1 1.5549 2.4565 1.2125 6 1 3.5350 1.7565 0.0006 7 6 1.9314 -0.7104 -1.2304 8 6 1.5998 -2.0397 -1.4571 9 6 2.0775 -2.6534 -2.6030 10 9 1.7750 -3.9435 -2.8660 11 6 2.8778 -1.9228 -3.4783 12 7 3.3688 -2.5272 -4.6316 13 6 4.2061 -1.7629 -5.5594 14 6 4.0931 -2.3771 -6.9512 15 6 4.5800 -1.3619 -8.0013 16 14 6.3407 -0.9225 -7.5701 17 6 7.4872 -2.3091 -8.0617 18 6 7.6553 -2.2414 -9.5906 19 6 8.2087 -0.8745 -9.9813 20 6 7.1315 0.2051 -9.9458 21 6 6.8619 0.6153 -8.4878 22 6 6.4335 -0.6346 -5.7296 23 6 5.6440 -1.7682 -5.0501 24 7 3.1708 -0.6571 -3.2251 25 6 2.7254 -0.0461 -2.1434 26 1 -0.3933 0.4416 -0.7651 27 1 1.7923 -0.5138 0.8900 28 1 0.9802 -2.5814 -0.7577 29 1 3.1566 -3.4545 -4.8212 30 1 3.8475 -0.7342 -5.5954 31 1 3.0532 -2.6359 -7.1509 32 1 4.7075 -3.2760 -7.0027 33 1 3.9564 -0.4683 -7.9706 34 1 4.5416 -1.8083 -8.9949 35 1 7.0529 -3.2678 -7.7783 36 1 8.4545 -2.1807 -7.5760 37 1 6.6879 -2.3921 -10.0696 38 1 8.3465 -3.0193 -9.9149 39 1 9.0058 -0.6033 -9.2890 40 1 8.6193 -0.9328 -10.9893 41 1 7.4697 1.0747 -10.5091 42 1 6.2146 -0.1817 -10.3906 43 1 6.0641 1.3571 -8.4522 44 1 7.7694 1.0235 -8.0427 45 1 7.4729 -0.6583 -5.4023 46 1 5.9874 0.3286 -5.4818 47 1 5.6477 -1.6171 -3.9707 48 1 6.1089 -2.7259 -5.2846 49 1 2.9857 0.9876 -1.9702 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15739364_17656566.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:37:55 Heat of formation + Delta-G solvation = -86.659645 kcal Electronic energy + Delta-G solvation = -27706.178081 eV Core-core repulsion = 23898.285771 eV Total energy + Delta-G solvation = -3807.892310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.95254 -41.46566 -39.01576 -37.65991 -37.31454 -34.77032 -33.19212 -32.02235 -31.87658 -31.22349 -27.65658 -26.91421 -25.88460 -24.52636 -23.53923 -23.23007 -22.80883 -21.39061 -21.02662 -19.32084 -18.51535 -18.33860 -17.65127 -17.01837 -16.50193 -16.31801 -16.10113 -15.95737 -15.88001 -15.69385 -15.28084 -15.06666 -14.97268 -14.71350 -14.57926 -14.12651 -13.74059 -13.68632 -13.52361 -13.35111 -13.25340 -13.01416 -12.77039 -12.64265 -12.55246 -12.29428 -12.16002 -12.10665 -12.00003 -11.94454 -11.89070 -11.56894 -11.45678 -11.22204 -10.74265 -10.60717 -10.39314 -10.20341 -10.12111 -10.07575 -8.75638 -0.10255 0.11817 1.19525 1.50171 1.54688 1.88357 1.89166 1.95468 1.96466 2.03810 2.53679 2.68137 3.02749 3.26963 3.48750 3.68474 3.78769 3.83894 3.99709 4.03635 4.09559 4.13491 4.24471 4.30485 4.38376 4.45547 4.49656 4.54121 4.54766 4.64426 4.70634 4.75437 4.81959 4.85644 4.87840 4.95966 4.98664 5.03526 5.16551 5.21129 5.23275 5.26921 5.31094 5.35999 5.40470 5.44442 5.48292 5.51343 5.55277 5.66449 6.00009 6.20925 6.72506 6.96863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.552 6.552 2 C -0.063 4.063 3 Si 0.974 3.026 4 H -0.247 1.247 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.206 4.206 8 C -0.036 4.036 9 C -0.038 4.038 10 F -0.140 7.140 11 C 0.381 3.619 12 N -0.713 5.713 13 C 0.149 3.851 14 C -0.116 4.116 15 C -0.407 4.407 16 Si 1.056 2.944 17 C -0.414 4.414 18 C -0.112 4.112 19 C -0.134 4.134 20 C -0.113 4.113 21 C -0.419 4.419 22 C -0.414 4.414 23 C -0.114 4.114 24 N -0.526 5.526 25 C 0.133 3.867 26 H 0.389 0.611 27 H 0.128 0.872 28 H 0.160 0.840 29 H 0.415 0.585 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.047 0.953 48 H 0.070 0.930 49 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.729 0.925 -1.553 1.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.175 4.175 3 Si 0.797 3.203 4 H -0.171 1.171 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.212 4.212 8 C -0.062 4.062 9 C -0.065 4.065 10 F -0.119 7.119 11 C 0.142 3.858 12 N -0.345 5.345 13 C 0.045 3.955 14 C -0.154 4.154 15 C -0.493 4.493 16 Si 1.246 2.754 17 C -0.500 4.500 18 C -0.150 4.150 19 C -0.172 4.172 20 C -0.151 4.151 21 C -0.504 4.504 22 C -0.499 4.499 23 C -0.152 4.152 24 N -0.243 5.243 25 C -0.024 4.024 26 H 0.238 0.762 27 H 0.146 0.854 28 H 0.178 0.822 29 H 0.253 0.747 30 H 0.099 0.901 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.093 0.907 47 H 0.065 0.935 48 H 0.089 0.911 49 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 1.749 1.961 -1.751 3.158 hybrid contribution -0.759 -1.273 0.095 1.486 sum 0.990 0.687 -1.656 2.048 Atomic orbital electron populations 1.86494 1.17417 1.81899 1.50114 1.24824 0.84854 1.10486 0.97287 0.85346 0.79920 0.74380 0.80612 1.17098 1.19609 1.17694 1.20995 1.04410 0.95049 1.00729 1.21431 0.95943 0.94509 0.94307 1.18159 1.07775 0.80975 0.99547 1.91465 1.92223 1.34172 1.94048 1.18600 0.90199 0.89195 0.87802 1.44864 1.54332 1.14957 1.20374 1.21071 0.89956 0.96516 0.87960 1.21521 1.02669 0.99343 0.91867 1.26252 1.18736 1.02563 1.01769 0.78617 0.66105 0.66201 0.64504 1.26372 1.10639 1.13605 0.99382 1.21275 1.01496 0.96589 0.95614 1.21530 0.98883 0.95032 1.01759 1.21255 0.99078 0.98227 0.96495 1.26374 1.05683 1.15034 1.03336 1.26365 1.02398 1.00667 1.20453 1.21594 0.94379 0.99294 0.99969 1.67346 1.26907 1.07691 1.22342 1.22671 0.91940 0.99853 0.87961 0.76165 0.85399 0.82238 0.74739 0.90095 0.91279 0.90065 0.90317 0.89287 0.90401 0.90880 0.91148 0.92477 0.91937 0.92105 0.92568 0.91160 0.90574 0.90854 0.90425 0.90694 0.93459 0.91137 0.81370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.79 12.78 -148.98 -1.90 -1.12 16 2 C -0.06 0.18 2.84 71.24 0.20 0.39 16 3 Si 0.97 -3.06 25.10 68.60 1.72 -1.34 16 4 H -0.25 0.80 7.11 99.48 0.71 1.51 16 5 H -0.27 -0.13 7.11 99.48 0.71 0.57 16 6 H -0.25 0.55 7.11 99.48 0.71 1.26 16 7 C -0.21 -0.01 5.40 -19.76 -0.11 -0.12 16 8 C -0.04 -0.07 9.75 22.48 0.22 0.15 16 9 C -0.04 -0.18 7.35 22.58 0.17 -0.01 16 10 F -0.14 -0.80 16.65 44.97 0.75 -0.05 16 11 C 0.38 1.87 7.27 133.06 0.97 2.84 16 12 N -0.71 -1.26 5.19 -325.71 -1.69 -2.95 16 13 C 0.15 0.00 2.02 44.69 0.09 0.09 16 14 C -0.12 0.39 5.07 30.77 0.16 0.54 16 15 C -0.41 1.79 4.97 72.31 0.36 2.15 16 16 Si 1.06 -5.28 9.19 68.60 0.63 -4.65 16 17 C -0.41 1.41 4.97 72.31 0.36 1.77 16 18 C -0.11 0.27 5.64 30.77 0.17 0.44 16 19 C -0.13 0.22 5.40 30.30 0.16 0.39 16 20 C -0.11 0.22 5.62 30.73 0.17 0.39 16 21 C -0.42 1.13 4.97 72.26 0.36 1.49 16 22 C -0.41 0.71 4.97 72.30 0.36 1.07 16 23 C -0.11 -0.03 5.20 30.77 0.16 0.13 16 24 N -0.53 -2.75 9.21 -193.03 -1.78 -4.52 16 25 C 0.13 0.23 9.84 84.62 0.83 1.06 16 26 H 0.39 -2.93 8.70 -74.06 -0.64 -3.57 16 27 H 0.13 -0.61 7.96 -2.39 -0.02 -0.63 16 28 H 0.16 -0.09 8.06 -2.91 -0.02 -0.11 16 29 H 0.41 -0.26 8.05 -92.71 -0.75 -1.01 16 30 H 0.08 0.20 7.29 -2.39 -0.02 0.18 16 31 H 0.07 -0.18 8.13 -2.38 -0.02 -0.20 16 32 H 0.08 -0.44 7.72 -2.39 -0.02 -0.46 16 33 H 0.08 -0.30 7.98 -2.38 -0.02 -0.32 16 34 H 0.09 -0.49 7.98 -2.39 -0.02 -0.51 16 35 H 0.08 -0.32 7.98 -2.39 -0.02 -0.34 16 36 H 0.07 -0.20 7.98 -2.39 -0.02 -0.21 16 37 H 0.07 -0.28 7.72 -2.39 -0.02 -0.30 16 38 H 0.06 -0.09 8.14 -2.39 -0.02 -0.11 16 39 H 0.06 -0.08 7.89 -2.39 -0.02 -0.10 16 40 H 0.06 -0.10 8.14 -2.39 -0.02 -0.12 16 41 H 0.06 -0.05 8.14 -2.39 -0.02 -0.07 16 42 H 0.07 -0.24 7.71 -2.39 -0.02 -0.26 16 43 H 0.08 -0.22 7.98 -2.39 -0.02 -0.24 16 44 H 0.07 -0.15 7.98 -2.38 -0.02 -0.17 16 45 H 0.08 -0.14 7.98 -2.39 -0.02 -0.16 16 46 H 0.07 -0.04 7.98 -2.39 -0.02 -0.06 16 47 H 0.05 0.22 7.94 -2.39 -0.02 0.20 16 48 H 0.07 -0.11 7.72 -2.39 -0.02 -0.13 16 49 H 0.17 -0.34 4.88 -2.91 -0.01 -0.35 16 Total: 0.00 -10.25 378.74 2.68 -7.57 By element: Atomic # 1 Polarization: -6.02 SS G_CDS: 0.31 Total: -5.71 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 4.63 Total: 12.77 kcal Atomic # 7 Polarization: -4.01 SS G_CDS: -3.47 Total: -7.47 kcal Atomic # 8 Polarization: 0.79 SS G_CDS: -1.90 Total: -1.12 kcal Atomic # 9 Polarization: -0.80 SS G_CDS: 0.75 Total: -0.05 kcal Atomic # 14 Polarization: -8.34 SS G_CDS: 2.35 Total: -5.99 kcal Total: -10.25 2.68 -7.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15739364_17656566.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.092 kcal (2) G-P(sol) polarization free energy of solvation -10.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -7.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds