Wall clock time and date at job start Thu Mar 4 2021 12:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42905 * 1 3 3 Si 1.86309 * 109.47010 * 2 1 4 4 C 1.50703 * 109.47116 * 119.99621 * 2 1 3 5 5 C 1.33323 * 125.94829 * 65.00034 * 4 2 1 6 6 N 1.32124 * 114.58053 * 180.02562 * 5 4 2 7 7 C 1.29683 * 116.86353 * 0.02562 * 6 5 4 8 8 N 1.38609 * 124.94818 * 179.97438 * 7 6 5 9 9 C 1.46493 * 120.00218 * 0.02562 * 8 7 6 10 10 H 1.09007 * 112.85019 * 336.19623 * 9 8 7 11 11 C 1.53779 * 113.61863 * 107.50047 * 9 8 7 12 12 C 1.53781 * 87.07964 * 89.11821 * 11 9 8 13 13 H 1.09002 * 113.69028 * 270.87292 * 12 11 9 14 14 C 1.53005 * 113.61396 * 139.98310 * 12 11 9 15 15 F 1.39898 * 109.47162 * 322.50462 * 14 12 11 16 16 F 1.39899 * 109.46685 * 82.50153 * 14 12 11 17 17 F 1.39900 * 109.47136 * 202.50028 * 14 12 11 18 18 C 1.53777 * 87.08224 * 25.43720 * 12 11 9 19 19 S 1.70968 * 110.10323 * 0.02562 * 7 6 5 20 20 H 0.96702 * 113.99674 * 300.00217 * 1 2 3 21 21 H 1.08994 * 109.47437 * 240.00293 * 2 1 3 22 22 H 1.48495 * 109.99763 * 178.68092 * 3 2 1 23 23 H 1.48504 * 109.99793 * 300.00085 * 3 2 1 24 24 H 1.08002 * 122.71551 * 0.04681 * 5 4 2 25 25 H 0.96999 * 120.00070 * 179.97438 * 8 7 6 26 26 H 1.08995 * 113.62187 * 203.66787 * 11 9 8 27 27 H 1.09002 * 113.61541 * 334.57104 * 11 9 8 28 28 H 1.09003 * 113.61404 * 220.02005 * 18 12 11 29 29 H 1.08999 * 113.69099 * 89.12404 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7566 0.0000 4 6 1.9314 -0.7103 1.2305 5 6 1.7622 -2.0024 1.5122 6 7 2.2973 -2.3901 2.6564 7 6 2.9099 -1.4843 3.3535 8 7 3.5285 -1.7053 4.5741 9 6 3.5204 -3.0446 5.1676 10 1 2.6948 -3.6606 4.8109 11 6 4.8857 -3.7502 5.1145 12 6 5.1899 -3.0929 6.4710 13 1 5.6527 -2.1096 6.3872 14 6 5.9245 -4.0140 7.4474 15 9 5.4377 -5.3187 7.3135 16 9 7.2944 -3.9960 7.1643 17 9 5.7129 -3.5693 8.7568 18 6 3.6699 -3.0412 6.6981 19 16 2.8422 0.0224 2.5484 20 1 -0.3933 0.4417 0.7651 21 1 1.7924 -0.5137 -0.8899 22 1 3.5346 1.7703 0.0321 23 1 1.5615 2.4680 -1.2085 24 1 1.2311 -2.6779 0.8580 25 1 3.9674 -0.9732 5.0350 26 1 4.8177 -4.8371 5.1614 27 1 5.5271 -3.3999 4.3059 28 1 3.3298 -2.1183 7.1680 29 1 3.2682 -3.9335 7.1781 There are 47 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 47 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER m_27_15744636_15704118.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:39:47 Heat of formation + Delta-G solvation = -100.124869 kcal Electronic energy + Delta-G solvation = -19574.312173 eV Core-core repulsion = 15791.125981 eV Total energy + Delta-G solvation = -3783.186192 eV No. of doubly occupied orbitals = 47 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 281.044 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -51.10680 -48.63044 -48.59799 -41.07729 -40.06924 -37.83398 -35.24002 -31.29947 -29.06080 -26.97147 -26.54413 -24.94963 -23.89663 -21.66915 -20.42287 -19.81421 -19.37141 -19.26008 -18.69783 -17.99130 -16.97576 -16.67745 -16.33785 -15.85742 -15.60370 -15.54044 -15.49507 -15.07580 -15.04063 -14.85241 -14.78727 -14.77563 -14.27096 -14.00726 -13.76803 -13.58185 -12.87976 -12.46059 -12.31255 -12.07192 -12.00439 -11.61980 -11.15963 -10.83574 -10.26600 -10.17460 -8.78831 -5.11862 -0.07557 0.00118 0.65522 1.26789 1.58182 1.77982 1.89681 1.95567 2.10379 2.73105 2.80308 2.97153 3.38271 3.51243 3.57605 3.63690 3.70666 3.92180 4.00585 4.44224 4.48597 4.59130 4.61034 4.71762 4.75581 4.86213 4.89215 5.16650 5.79624 6.12758 6.73544 6.98956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.551 6.551 2 C -0.014 4.014 3 Si 0.733 3.267 4 C -0.308 4.308 5 C 0.103 3.897 6 N -0.575 5.575 7 C 0.315 3.685 8 N -0.668 5.668 9 C 0.145 3.855 10 H 0.104 0.896 11 C -0.141 4.141 12 C -0.159 4.159 13 H 0.152 0.848 14 C 0.454 3.546 15 F -0.188 7.188 16 F -0.194 7.194 17 F -0.189 7.189 18 C -0.123 4.123 19 S 0.125 5.875 20 H 0.395 0.605 21 H 0.119 0.881 22 H -0.269 1.269 23 H -0.274 1.274 24 H 0.177 0.823 25 H 0.427 0.573 26 H 0.104 0.896 27 H 0.084 0.916 28 H 0.108 0.892 29 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.031 4.120 2.156 4.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.359 6.359 2 C -0.128 4.128 3 Si 0.637 3.363 4 C -0.431 4.431 5 C -0.048 4.048 6 N -0.301 5.301 7 C -0.055 4.055 8 N -0.308 5.308 9 C 0.037 3.963 10 H 0.122 0.878 11 C -0.181 4.181 12 C -0.178 4.178 13 H 0.170 0.830 14 C 0.400 3.600 15 F -0.170 7.170 16 F -0.176 7.176 17 F -0.171 7.171 18 C -0.161 4.161 19 S 0.375 5.625 20 H 0.245 0.755 21 H 0.136 0.864 22 H -0.195 1.195 23 H -0.199 1.199 24 H 0.194 0.806 25 H 0.267 0.733 26 H 0.122 0.878 27 H 0.102 0.898 28 H 0.126 0.874 29 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -0.111 4.696 1.709 4.999 hybrid contribution 0.180 -1.345 -0.366 1.406 sum 0.069 3.351 1.343 3.611 Atomic orbital electron populations 1.86488 1.16990 1.82110 1.50289 1.24232 0.84898 1.09310 0.94338 0.94140 0.79046 0.75698 0.87449 1.25727 1.14757 0.98211 1.04411 1.21434 0.97257 0.93788 0.92325 1.66464 1.19584 1.34764 1.09274 1.23897 0.95382 0.93776 0.92427 1.43679 1.58804 1.11522 1.16834 1.21656 0.98073 0.83388 0.93209 0.87837 1.23565 0.98063 1.01757 0.94670 1.24217 0.98083 1.00582 0.94959 0.83008 1.20814 0.77407 0.80494 0.81240 1.93156 1.87710 1.40426 1.95705 1.93180 1.34423 1.96559 1.93426 1.93185 1.94609 1.89108 1.40165 1.23381 0.90944 1.06221 0.95585 1.83792 1.54844 1.09804 1.14103 0.75494 0.86409 1.19544 1.19920 0.80619 0.73299 0.87786 0.89776 0.87375 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.55 0.33 12.88 -148.98 -1.92 -1.59 15 2 C -0.01 0.02 2.99 71.24 0.21 0.23 15 3 Si 0.73 -1.78 31.07 68.60 2.13 0.35 15 4 C -0.31 0.00 5.73 24.57 0.14 0.14 15 5 C 0.10 0.29 11.24 83.54 0.94 1.23 15 6 N -0.57 -2.42 9.83 -202.03 -1.99 -4.41 15 7 C 0.32 -0.09 8.09 179.32 1.45 1.36 15 8 N -0.67 3.75 5.42 -327.90 -1.78 1.97 15 9 C 0.15 -0.78 4.44 45.52 0.20 -0.58 15 10 H 0.10 -0.18 7.66 -2.38 -0.02 -0.20 15 11 C -0.14 0.71 7.32 31.12 0.23 0.94 15 12 C -0.16 1.08 3.68 -10.27 -0.04 1.04 15 13 H 0.15 -1.64 8.14 -2.39 -0.02 -1.66 15 14 C 0.45 -0.28 3.02 71.98 0.22 -0.06 15 15 F -0.19 -0.33 15.76 44.97 0.71 0.38 15 16 F -0.19 -0.55 17.32 44.97 0.78 0.22 15 17 F -0.19 -0.29 17.18 44.97 0.77 0.49 15 18 C -0.12 1.02 7.18 31.12 0.22 1.25 15 19 S 0.13 -0.35 20.59 -56.49 -1.16 -1.51 15 20 H 0.40 -3.25 8.70 -74.06 -0.64 -3.90 15 21 H 0.12 -0.08 7.96 -2.39 -0.02 -0.10 15 22 H -0.27 -0.58 7.11 99.48 0.71 0.12 15 23 H -0.27 -1.05 7.11 99.48 0.71 -0.34 15 24 H 0.18 0.25 8.06 -2.91 -0.02 0.23 15 25 H 0.43 -4.60 8.82 -92.71 -0.82 -5.42 15 26 H 0.10 -0.40 7.13 -2.39 -0.02 -0.41 15 27 H 0.08 -0.33 8.14 -2.39 -0.02 -0.35 15 28 H 0.11 -1.19 8.14 -2.39 -0.02 -1.21 15 29 H 0.11 -0.86 7.89 -2.39 -0.02 -0.87 15 Total: 0.00 -13.58 278.58 0.92 -12.67 By element: Atomic # 1 Polarization: -13.91 SS G_CDS: -0.20 Total: -14.11 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: 3.58 Total: 5.55 kcal Atomic # 7 Polarization: 1.33 SS G_CDS: -3.76 Total: -2.44 kcal Atomic # 8 Polarization: 0.33 SS G_CDS: -1.92 Total: -1.59 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 2.26 Total: 1.09 kcal Atomic # 14 Polarization: -1.78 SS G_CDS: 2.13 Total: 0.35 kcal Atomic # 16 Polarization: -0.35 SS G_CDS: -1.16 Total: -1.51 kcal Total: -13.58 0.92 -12.67 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15744636_15704118.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.458 kcal (2) G-P(sol) polarization free energy of solvation -13.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -12.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds