Wall clock time and date at job start Thu Mar 4 2021 12:46:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 Si 1.86299 * 1 3 3 C 1.86299 * 110.06156 * 2 1 4 4 C 1.87516 * 110.00263 * 238.63387 * 2 1 3 5 5 C 1.53937 * 106.85168 * 196.90384 * 4 2 1 6 6 C 1.52621 * 109.30828 * 57.20508 * 5 4 2 7 7 N 1.46361 * 111.88893 * 283.47682 * 6 5 4 8 8 C 1.38405 * 111.00036 * 203.19798 * 7 6 5 9 9 N 1.32494 * 119.22088 * 235.38576 * 8 7 6 10 10 C 1.32272 * 120.74414 * 179.75955 * 9 8 7 11 11 C 1.38606 * 119.19379 * 0.50690 * 10 9 8 12 12 C 1.50706 * 120.71767 * 179.72843 * 11 10 9 13 13 O 1.42911 * 109.47056 * 120.01971 * 12 11 10 14 14 Si 1.86296 * 109.47287 * 0.02562 * 12 11 10 15 15 H 1.48501 * 109.47042 * 60.00049 * 14 12 11 16 16 H 1.48505 * 109.46899 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.46962 * 300.00032 * 14 12 11 18 18 C 1.38603 * 118.56259 * 359.74450 * 11 10 9 19 19 N 1.32283 * 119.19111 * 0.02562 * 18 11 10 20 20 C 1.47728 * 111.30335 * 79.02702 * 7 6 5 21 21 H 1.08997 * 109.47162 * 298.63797 * 1 2 3 22 22 H 1.08999 * 109.47251 * 58.63705 * 1 2 3 23 23 H 1.09002 * 109.47408 * 178.64077 * 1 2 3 24 24 H 1.09002 * 109.47103 * 181.36258 * 3 2 1 25 25 H 1.08998 * 109.47316 * 301.35944 * 3 2 1 26 26 H 1.09000 * 109.47117 * 61.36496 * 3 2 1 27 27 H 1.09005 * 109.97949 * 316.23788 * 4 2 1 28 28 H 1.08999 * 109.97732 * 77.48003 * 4 2 1 29 29 H 1.08996 * 109.49595 * 177.15813 * 5 4 2 30 30 H 1.09001 * 109.49152 * 297.22334 * 5 4 2 31 31 H 1.08998 * 108.99468 * 162.86155 * 6 5 4 32 32 H 1.08996 * 109.00311 * 44.10178 * 6 5 4 33 33 H 1.07998 * 120.40684 * 180.27220 * 10 9 8 34 34 H 1.09000 * 109.47096 * 240.01273 * 12 11 10 35 35 H 0.96698 * 113.99252 * 300.00052 * 13 12 11 36 36 H 1.08000 * 120.40412 * 180.02562 * 18 11 10 37 37 H 1.08998 * 109.94867 * 59.06375 * 20 7 6 38 38 H 1.08997 * 109.94285 * 180.22866 * 20 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 14 1.8630 0.0000 0.0000 3 6 2.5021 1.7500 0.0000 4 6 2.5044 -0.9172 -1.5045 5 6 3.9816 -1.2502 -1.2279 6 6 4.0830 -2.0637 0.0595 7 7 3.9262 -1.2250 1.2486 8 6 4.5118 -1.8172 2.3540 9 7 3.7825 -2.0207 3.4413 10 6 4.3103 -2.5885 4.5130 11 6 5.6450 -2.9619 4.4924 12 6 6.2829 -3.6059 5.6963 13 8 6.7694 -4.9020 5.3416 14 14 5.0201 -3.7675 7.0564 15 1 3.8904 -4.6085 6.5856 16 1 5.6487 -4.4026 8.2425 17 1 4.5146 -2.4207 7.4250 18 6 6.3802 -2.7299 3.3406 19 7 5.7900 -2.1620 2.3018 20 6 2.5042 -0.9169 1.5043 21 1 -0.3633 0.4925 0.9019 22 1 -0.3634 0.5348 -0.8775 23 1 -0.3634 -1.0274 -0.0244 24 1 3.5917 1.7388 -0.0244 25 1 2.1244 2.2747 -0.8775 26 1 2.1641 2.2602 0.9020 27 1 1.9366 -1.8361 -1.6507 28 1 2.4231 -0.2849 -2.3887 29 1 4.3853 -1.8304 -2.0577 30 1 4.5489 -0.3257 -1.1203 31 1 5.0572 -2.5513 0.0952 32 1 3.3054 -2.8275 0.0588 33 1 3.7097 -2.7557 5.3949 34 1 7.1123 -2.9887 6.0418 35 1 6.0840 -5.5060 5.0245 36 1 7.4223 -3.0094 3.2917 37 1 1.9428 -1.8407 1.6441 38 1 2.4134 -0.2892 2.3908 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV m_27_15766106_12175864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Thu Mar 4 2021 12:46:38 Heat of formation + Delta-G solvation = -4.786971 kcal Electronic energy + Delta-G solvation = -18669.718173 eV Core-core repulsion = 15864.243190 eV Total energy + Delta-G solvation = -2805.474983 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 267.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.31970 -39.15996 -37.76399 -34.84409 -34.30343 -32.26256 -29.44791 -28.45039 -27.97034 -27.33480 -25.57351 -24.95500 -23.02224 -21.75474 -19.21601 -18.79668 -18.06749 -16.74398 -16.41257 -16.25224 -16.02486 -15.88480 -14.98416 -14.72855 -14.56913 -14.41367 -14.31381 -14.08180 -13.88122 -13.57541 -13.28764 -13.21531 -13.16713 -12.94009 -12.35242 -12.26211 -12.12216 -12.06155 -11.79420 -11.75749 -11.30704 -10.88285 -10.80120 -10.60756 -10.38579 -10.07228 -9.31283 -0.17175 0.09013 1.00752 1.31031 1.37531 1.52967 1.76382 1.79945 1.81707 2.29354 2.51050 2.72950 3.10773 3.31385 3.53546 3.58955 3.67279 3.96602 4.05715 4.11717 4.44133 4.46879 4.48814 4.59071 4.64733 4.68369 4.69232 4.75589 4.78291 4.82671 4.93075 5.06597 5.17225 5.24729 5.35493 5.43943 5.59663 5.64844 5.71379 6.17218 6.39393 7.14066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.448 4.448 2 Si 1.021 2.979 3 C -0.442 4.442 4 C -0.410 4.410 5 C -0.104 4.104 6 C 0.053 3.947 7 N -0.440 5.440 8 C 0.493 3.507 9 N -0.542 5.542 10 C 0.171 3.829 11 C -0.267 4.267 12 C -0.063 4.063 13 O -0.537 6.537 14 Si 0.939 3.061 15 H -0.249 1.249 16 H -0.246 1.246 17 H -0.247 1.247 18 C 0.206 3.794 19 N -0.531 5.531 20 C -0.227 4.227 21 H 0.071 0.929 22 H 0.073 0.927 23 H 0.069 0.931 24 H 0.074 0.926 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.078 0.922 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.161 0.839 34 H 0.123 0.877 35 H 0.377 0.623 36 H 0.175 0.825 37 H 0.063 0.937 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 -0.815 -0.248 1.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.557 4.557 2 Si 1.215 2.785 3 C -0.551 4.551 4 C -0.496 4.496 5 C -0.142 4.142 6 C -0.073 4.073 7 N -0.158 5.158 8 C 0.138 3.862 9 N -0.261 5.261 10 C 0.004 3.996 11 C -0.274 4.274 12 C -0.175 4.175 13 O -0.342 6.342 14 Si 0.761 3.239 15 H -0.172 1.172 16 H -0.169 1.169 17 H -0.171 1.171 18 C 0.037 3.963 19 N -0.248 5.248 20 C -0.400 4.400 21 H 0.090 0.910 22 H 0.092 0.908 23 H 0.089 0.911 24 H 0.093 0.907 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.094 0.906 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.070 0.930 33 H 0.178 0.822 34 H 0.141 0.859 35 H 0.224 0.776 36 H 0.192 0.808 37 H 0.082 0.918 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -1.747 0.262 -0.367 1.805 hybrid contribution -0.088 -1.117 0.596 1.269 sum -1.835 -0.855 0.229 2.037 Atomic orbital electron populations 1.26086 1.20185 1.04638 1.04760 0.79407 0.66301 0.67587 0.65226 1.26022 1.06899 1.17867 1.04267 1.26378 1.00741 1.08179 1.14334 1.21258 0.96577 1.01057 0.95272 1.22186 1.03332 0.93929 0.87816 1.58482 1.16254 1.40102 1.00963 1.21434 0.86913 0.87158 0.90671 1.68357 1.38730 1.17558 1.01459 1.22946 0.91904 0.89302 0.95484 1.21915 0.96975 1.08247 1.00223 1.24723 1.07083 0.86093 0.99619 1.86535 1.38331 1.21727 1.87560 0.85819 0.77587 0.81969 0.78529 1.17242 1.16921 1.17101 1.23034 1.00098 0.87127 0.86020 1.68137 1.10110 1.15282 1.31266 1.27488 0.87924 1.07906 1.16636 0.91005 0.90803 0.91137 0.90708 0.91241 0.91299 0.90598 0.90095 0.90591 0.90329 0.88896 0.93046 0.82238 0.85948 0.77614 0.80780 0.91834 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.45 0.75 8.65 101.05 0.87 1.63 16 2 Si 1.02 -2.09 11.99 -169.99 -2.04 -4.13 16 3 C -0.44 0.34 8.65 101.05 0.87 1.21 16 4 C -0.41 0.69 5.04 37.65 0.19 0.88 16 5 C -0.10 0.07 5.74 -26.44 -0.15 -0.08 16 6 C 0.05 0.04 5.04 -4.31 -0.02 0.02 16 7 N -0.44 -0.93 4.36 -113.88 -0.50 -1.43 16 8 C 0.49 1.80 7.18 -322.81 -2.32 -0.52 16 9 N -0.54 -1.83 8.73 -13.93 -0.12 -1.96 16 10 C 0.17 0.22 9.92 -17.23 -0.17 0.05 16 11 C -0.27 -0.05 5.40 -104.35 -0.56 -0.61 16 12 C -0.06 0.10 2.85 36.01 0.10 0.20 16 13 O -0.54 0.55 12.79 -35.23 -0.45 0.10 16 14 Si 0.94 -1.52 25.15 -169.99 -4.28 -5.80 16 15 H -0.25 0.35 7.11 56.52 0.40 0.75 16 16 H -0.25 0.05 7.11 56.52 0.40 0.45 16 17 H -0.25 0.24 7.11 56.52 0.40 0.64 16 18 C 0.21 0.24 10.92 -17.22 -0.19 0.05 16 19 N -0.53 -1.80 9.41 -13.93 -0.13 -1.93 16 20 C -0.23 -0.12 3.58 60.52 0.22 0.09 16 21 H 0.07 -0.11 7.96 -51.93 -0.41 -0.52 16 22 H 0.07 -0.13 7.96 -51.93 -0.41 -0.55 16 23 H 0.07 -0.12 7.96 -51.93 -0.41 -0.53 16 24 H 0.07 0.01 7.96 -51.93 -0.41 -0.40 16 25 H 0.07 -0.08 7.96 -51.93 -0.41 -0.49 16 26 H 0.07 -0.04 7.96 -51.93 -0.41 -0.45 16 27 H 0.08 -0.14 7.99 -51.93 -0.42 -0.56 16 28 H 0.08 -0.16 7.99 -51.93 -0.42 -0.58 16 29 H 0.08 -0.09 8.14 -51.93 -0.42 -0.52 16 30 H 0.08 -0.03 7.96 -51.93 -0.41 -0.44 16 31 H 0.09 0.14 7.07 -51.93 -0.37 -0.22 16 32 H 0.05 0.01 7.78 -51.93 -0.40 -0.39 16 33 H 0.16 -0.12 5.04 -52.49 -0.26 -0.39 16 34 H 0.12 -0.32 7.96 -51.93 -0.41 -0.73 16 35 H 0.38 -1.49 8.70 45.56 0.40 -1.09 16 36 H 0.18 -0.17 8.06 -52.49 -0.42 -0.59 16 37 H 0.06 0.04 7.88 -51.93 -0.41 -0.36 16 38 H 0.10 0.12 7.64 -51.93 -0.40 -0.27 16 LS Contribution 306.72 15.07 4.62 4.62 Total: 0.00 -5.60 306.72 -9.27 -14.87 By element: Atomic # 1 Polarization: -2.04 SS G_CDS: -5.22 Total: -7.27 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -1.16 Total: 2.91 kcal Atomic # 7 Polarization: -4.57 SS G_CDS: -0.75 Total: -5.32 kcal Atomic # 8 Polarization: 0.55 SS G_CDS: -0.45 Total: 0.10 kcal Atomic # 14 Polarization: -3.61 SS G_CDS: -6.31 Total: -9.92 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -5.60 -9.27 -14.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. m_27_15766106_12175864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.088 kcal (2) G-P(sol) polarization free energy of solvation -5.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds